mRNA_C-tenellus_contig10259.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10259.3.1
Unique NamemRNA_C-tenellus_contig10259.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10259.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10259contigC-tenellus_contig10259:3889..4882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size166
Hectar predicted targeting categorysignal anchor
Exons2
Cds size147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789123.4064884-UTR-C-tenellus_contig10259:3888..39071680789123.4064884-UTR-C-tenellus_contig10259:3888..3907Choristocarpus tenellus KU2346UTRC-tenellus_contig10259 3889..3907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789123.417817-CDS-C-tenellus_contig10259:3907..39711680789123.417817-CDS-C-tenellus_contig10259:3907..3971Choristocarpus tenellus KU2346CDSC-tenellus_contig10259 3908..3971 +
1680789123.4316044-CDS-C-tenellus_contig10259:4799..48821680789123.4316044-CDS-C-tenellus_contig10259:4799..4882Choristocarpus tenellus KU2346CDSC-tenellus_contig10259 4800..4882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10259.3.1prot_C-tenellus_contig10259.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10259 3908..4882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10259.3.1

>prot_C-tenellus_contig10259.3.1 ID=prot_C-tenellus_contig10259.3.1|Name=mRNA_C-tenellus_contig10259.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=49bp
MRNSLGMKDFQACDGICRDMSGVLGSVYIGVLLCWHLLLPYGLIQLREA
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mRNA from alignment at C-tenellus_contig10259:3889..4882+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10259.3.1 ID=mRNA_C-tenellus_contig10259.3.1|Name=mRNA_C-tenellus_contig10259.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=994bp|location=Sequence derived from alignment at C-tenellus_contig10259:3889..4882+ (Choristocarpus tenellus KU2346)
CGCCCTCATAGGTCTGCTAATGCGGAACTCTCTTGGAATGAAGGACTTCC
AAGCTTGTGACGGGATTTGTCGAGATATGTCTGGTGAGACACAGGTATGT
TGGACCCTGGAGCTATTTAGGGGGCTAGCGTCTGTGGGGGGTGTTAGCGA
GGCCAGGGGTAGTCTACTGTGTACCTGGGTATGTTGAACCCTGACAACTC
CGGCATGTCTGACCATTTCCAGCTGTGTGATGTGCCCCAATTAGAGATGA
TAATTCATGGGGTAGGAGGCAAACTATGAGGATAAGAAGTGCAGGCGGGC
ATGTCACTGACGCATGCTACACCGGTTGTATGGTTTGTGTTCTTTTTGTG
TGGTGCTTTTGAGTGCATGTATGTACTGTTCGATTTGTTTTGGGGTATGT
ACTGTACAACCAGGACCTAAACAATGGAGTAGAAGAGCAAGTGGCCATCC
CTTCCACTGAGACTTGTGTAGGCGGTTGCCAATATGCCCTGTAGCTCAGG
CGTTGAGTGACTCCACTGCTGTGTTAAGTGCAGCAACCGCTTTGATGGTG
TTTCATTGTGTGTGAATAAGGTACTCCTTCTCCGCCTTGGTGGTACAAAT
GAGGCTAGTGTCAATCTGTGCTTTAGTCACACTTCAGAGCACACACATGC
ACACACACATGTATTATTTTTTTCTTCACCCTTGTGTAGCAGATGCATTT
CTGTGTGCAAACAGCACTCAAGTCCACAGCTAGGAAAGTGACCTGTAAAT
CATACTGTATTTTCGTTCTTCTTGGGAAGATGATGCTTTACATGTAATGA
TGTATGTGTATGTGTGTGTGTGTTTGCTGGTCTCTTTCCCCCATCCTCCA
TCCTTCGCCCTCCATCCTCGTCCCTTTTGCACCTGTATGCAAATGTGGGG
TTTACATGCAGGAGTACTTGGAAGCGTGTACATTGGTGTCCTTCTTTGCT
GGCATCTGCTTCTTCCTTATGGCCTTATTCAACTTAGGGAAGCC
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Coding sequence (CDS) from alignment at C-tenellus_contig10259:3889..4882+

>mRNA_C-tenellus_contig10259.3.1 ID=mRNA_C-tenellus_contig10259.3.1|Name=mRNA_C-tenellus_contig10259.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=147bp|location=Sequence derived from alignment at C-tenellus_contig10259:3889..4882+ (Choristocarpus tenellus KU2346)
ATGCGGAACTCTCTTGGAATGAAGGACTTCCAAGCTTGTGACGGGATTTG
TCGAGATATGTCTGGAGTACTTGGAAGCGTGTACATTGGTGTCCTTCTTT
GCTGGCATCTGCTTCTTCCTTATGGCCTTATTCAACTTAGGGAAGCC
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