mRNA_C-tenellus_contig10258.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10258.1.1
Unique NamemRNA_C-tenellus_contig10258.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10258.1.1 vs. uniprot
Match: D8LJ47_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ47_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 2.780e-31
Identity = 58/84 (69.05%), Postives = 72/84 (85.71%), Query Frame = 1
Query:    1 YLGGLLDLTGEICRYGVAKATERDSVALKQCLETIVAIHDCATMNTLPGKLFRKKRELTNSLQKLENMTYELALLKAGKGIATG 252
            YLGGLLDLTGE+ R+ VA+ATERDSV +K+CLET++ IH+  T+N LPGKL +KK EL NSL+KL+NMTYELAL+KAGKG  +G
Sbjct:  432 YLGGLLDLTGELNRFAVARATERDSVGVKECLETVLVIHEFVTLNALPGKLPKKKNELLNSLRKLQNMTYELALMKAGKGTVSG 515          
BLAST of mRNA_C-tenellus_contig10258.1.1 vs. uniprot
Match: I2CRZ5_NANGC (Translin-like protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRZ5_NANGC)

HSP 1 Score: 82.0 bits (201), Expect = 1.910e-18
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 YLGGLLDLTGEICRYGVAKATERDSVALKQCLETIVAIHDCATMNTLPGKLFRKKRELTNSLQKLENMTYELALLKAGKGIATG 252
            Y+GGL+DLTGEI R+ V +AT RD  A+  CLET++ +        LPGK+ +K   L N+ +KLE + YELAL +AGKG   G
Sbjct:   18 YIGGLVDLTGEIGRFAVTRATARDKEAVDTCLETVLYLVGELLQMPLPGKIHKKMEGLRNNQRKLETLRYELALTRAGKGRVAG 101          
BLAST of mRNA_C-tenellus_contig10258.1.1 vs. uniprot
Match: A0A4D9D003_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D003_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.330e-16
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 YLGGLLDLTGEICRYGVAKATERDSVALKQCLETIVAIHDCATMNTLPGKLFRKKRELTNSLQKLENMTYELALLKAGKGIATG 252
            Y+GGL+DLTGEI R+ V +AT RD  A+  CLET++ +        LPGK+ +K   L N+ +KLE + YELAL +AGKG   G
Sbjct:  712 YIGGLVDLTGEIGRFAVTRATARDKEAVDTCLETVLYLVGELLQMPLPGKIHKKMEGLRNNQRKLETLRYELALTRAGKGRVAG 795          
BLAST of mRNA_C-tenellus_contig10258.1.1 vs. uniprot
Match: A0A7S2FME1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FME1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.610e-14
Identity = 34/79 (43.04%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    1 YLGGLLDLTGEICRYGVAKATERDSVALKQCLETIVAIHDCATMNTLPGKLFRKKRELTNSLQKLENMTYELALLKAGK 237
            YLGG++DLTGEI RY VA AT+R+   +++C ET   +++  ++ T+ G L +K   L  +L+K++ + YELAL +AG+
Sbjct:   39 YLGGVVDLTGEIGRYAVASATQRNLAQVRECFETTSVVNNQLSLMTMQGGLRKKTGALGTNLKKMKGILYELALAEAGR 117          
BLAST of mRNA_C-tenellus_contig10258.1.1 vs. uniprot
Match: A0A7S0LX05_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LX05_9CRYP)

HSP 1 Score: 73.2 bits (178), Expect = 1.790e-13
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    1 YLGGLLDLTGEICRYGVAKATERDSVALKQCLE-TIVAIHDCATMNTLPGKLFRKKRELTNSLQKLENMTYELALLKAGKGIATG 252
            YLGGLLD TGEI RY VA+AT RD  ++K+CLE T   +    ++  LPG L RK      +L+++E + YELAL++     A G
Sbjct:  224 YLGGLLDFTGEIGRYAVARATRRDLDSVKECLEATDRLVGQVTSLEGLPGALHRKVETARGTLRRMEGLVYELALMRRSSFAAEG 308          
BLAST of mRNA_C-tenellus_contig10258.1.1 vs. uniprot
Match: A0A2R5GN96_9STRA (Translin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GN96_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.060e-10
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 1
Query:    1 YLGGLLDLTGEICRYGVAKATERDSVALKQCLETIVAIHDCAT--MNTLPGKLFRKKRELTNSLQKLENMTYELALLKAGK 237
            YLGG++D TGEI RYGV +AT RD   +KQ L T++ I D A         K+ +K   + N+ +K+ N  YEL LLK  K
Sbjct:  396 YLGGIVDFTGEIGRYGVVRATARDEDTVKQVLATMLIIKDYAIDFQEIADPKMVKKLEAVFNNERKMRNTLYELTLLKHSK 476          
BLAST of mRNA_C-tenellus_contig10258.1.1 vs. uniprot
Match: A0A7R9Y0R1_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y0R1_9VIRI)

HSP 1 Score: 63.9 bits (154), Expect = 3.750e-10
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    1 YLGGLLDLTGEICRYGVAKATERDSVALKQCLETIVAIHDCATMNTLPGKLFRKKRE-LTNSLQKLENMTYELALLKAGK 237
            YLGG++DLTGE+ RY V++ATERD   +++C E + ++              RKK + +  +++KLE + YEL+L+ AGK
Sbjct:  194 YLGGVIDLTGELMRYAVSRATERDVEGVRRCAELVDSLQGQLIQFEFRNGALRKKYDSIKYNMKKLETVLYELSLVNAGK 273          
BLAST of mRNA_C-tenellus_contig10258.1.1 vs. uniprot
Match: A0A7S4CIW7_9EUGL (Hypothetical protein n=2 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CIW7_9EUGL)

HSP 1 Score: 63.2 bits (152), Expect = 9.730e-10
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    1 YLGGLLDLTGEICRYGVAKATERDSVALKQCLETIVAIHDCATMNTLPGKLFRKKRELTNSLQKLENMTYELALLKAGK 237
            YLGGL DLTGE+ RY VAKAT RD  A+++C   + A+     M  L G L++K   +  +L+K E + Y+L L   G+
Sbjct:  355 YLGGLADLTGELGRYAVAKATVRDVEAVERCHAIMDALSGELLMLRLGGDLYKKTNSIGWNLKKAETLLYDLMLATGGR 433          
BLAST of mRNA_C-tenellus_contig10258.1.1 vs. uniprot
Match: A0A059LLU5_9CHLO (Translin family protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LLU5_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 1.600e-9
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    1 YLGGLLDLTGEICRYGVAKATERDSVALKQCLETIVAIHDCATMNTLPGKLFRKKRE-LTNSLQKLENMTYELALLKAG 234
            YLGG+LD TGE+ RY + +ATERD  A+++  + + AI        L     RKK + L  +L KLEN  YEL+L +AG
Sbjct:  103 YLGGVLDFTGELNRYAILRATERDREAVQRAHDVVEAIFSAYIQFELRNGNLRKKYDALKYTLLKLENTLYELSLTEAG 181          
BLAST of mRNA_C-tenellus_contig10258.1.1 vs. uniprot
Match: A0A0M0JHC7_9EUKA (Translin-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JHC7_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 1.820e-9
Identity = 32/78 (41.03%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    1 YLGGLLDLTGEICRYGVAKATERDSVALKQCLETIVAIHDCATM--NTLPGKLFRKKRELTNSLQKLENMTYELALLK 228
            YLGG+ DL GEI R+ V +ATERD+ A++ CL T VA+     +     P  + +K   L  +++KLE + YEL+L++
Sbjct:  349 YLGGVCDLVGEIGRFAVRRATERDAPAVRACLGTAVAVQSAILVLGQAAPRGIAKKVEALKTAVRKLEQLLYELSLVE 426          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10258.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ47_ECTSI2.780e-3169.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
I2CRZ5_NANGC1.910e-1848.81Translin-like protein (Fragment) n=1 Tax=Nannochlo... [more]
A0A4D9D003_9STRA2.330e-1648.81Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2FME1_9STRA3.610e-1443.04Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S0LX05_9CRYP1.790e-1345.88Hypothetical protein (Fragment) n=2 Tax=Cryptomona... [more]
A0A2R5GN96_9STRA2.060e-1044.44Translin n=1 Tax=Hondaea fermentalgiana TaxID=2315... [more]
A0A7R9Y0R1_9VIRI3.750e-1040.00Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A7S4CIW7_9EUGL9.730e-1043.04Hypothetical protein n=2 Tax=Eutreptiella gymnasti... [more]
A0A059LLU5_9CHLO1.600e-944.30Translin family protein n=1 Tax=Helicosporidium sp... [more]
A0A0M0JHC7_9EUKA1.820e-941.03Translin-like protein n=1 Tax=Chrysochromulina tob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10258contigC-tenellus_contig10258:1782..2598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LJ47
Preferred nameTSN
PFAMsTranslin
Model size252
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K04500,ko:K05287
KEGG ReactionR05923,R05924,R08107
KEGG Pathwayko00563,ko01100,ko04068,ko04110,ko04144,ko04218,ko04350,ko04371,ko04390,ko04520,ko04550,ko04659,ko04926,ko04933,ko05142,ko05166,ko05200,ko05210,ko05212,ko05225,ko05226,ko05321,map00563,map01100,map04068,map04110,map04144,map04218,map04350,map04371,map04390,map04520,map04550,map04659,map04926,map04933,map05142,map05166,map05200,map05210,map05212,map05225,map05226,map05321
KEGG ModuleM00065,M00680,M00681
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003696,GO:0003697,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006310,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0006950,GO:0008033,GO:0008150,GO:0008152,GO:0009605,GO:0009892,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016246,GO:0016441,GO:0016458,GO:0016787,GO:0016788,GO:0019222,GO:0031047,GO:0031647,GO:0031667,GO:0034470,GO:0034641,GO:0034660,GO:0035194,GO:0035939,GO:0040029,GO:0042162,GO:0042321,GO:0042594,GO:0042595,GO:0042749,GO:0042752,GO:0042754,GO:0042802,GO:0042803,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045187,GO:0046483,GO:0046983,GO:0048519,GO:0048521,GO:0050789,GO:0050795,GO:0050821,GO:0050896,GO:0051239,GO:0051241,GO:0060255,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0098847,GO:0140098,GO:1901360,GO:1901363,GO:1990605,GO:1990837
Exons3
Evalue4.56e-32
EggNOG OGsKOG3067@1|root,KOG3067@2759|Eukaryota
Descriptionsingle-stranded DNA binding
Cds size252
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789123.3393095-CDS-C-tenellus_contig10258:1781..18921680789123.3393095-CDS-C-tenellus_contig10258:1781..1892Choristocarpus tenellus KU2346CDSC-tenellus_contig10258 1782..1892 +
1680789123.35821-CDS-C-tenellus_contig10258:2133..22201680789123.35821-CDS-C-tenellus_contig10258:2133..2220Choristocarpus tenellus KU2346CDSC-tenellus_contig10258 2134..2220 +
1680789123.3685565-CDS-C-tenellus_contig10258:2544..25981680789123.3685565-CDS-C-tenellus_contig10258:2544..2598Choristocarpus tenellus KU2346CDSC-tenellus_contig10258 2545..2598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10258.1.1prot_C-tenellus_contig10258.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10258 1782..2598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10258.1.1

>prot_C-tenellus_contig10258.1.1 ID=prot_C-tenellus_contig10258.1.1|Name=mRNA_C-tenellus_contig10258.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=84bp
YLGGLLDLTGEICRYGVAKATERDSVALKQCLETIVAIHDCATMNTLPGK
LFRKKRELTNSLQKLENMTYELALLKAGKGIATG
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mRNA from alignment at C-tenellus_contig10258:1782..2598+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10258.1.1 ID=mRNA_C-tenellus_contig10258.1.1|Name=mRNA_C-tenellus_contig10258.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=817bp|location=Sequence derived from alignment at C-tenellus_contig10258:1782..2598+ (Choristocarpus tenellus KU2346)
TACTTAGGTGGCCTGCTTGATCTAACAGGTGAGATCTGTCGCTATGGTGT TGCAAAGGCTACTGAACGTGATTCCGTTGCACTGAAGCAATGCTTGGAGA CAATCGTGGCGGTGAGATAACATTGATATGGGTGTAATAATGGAAATGGT GATTCAACTTTTTTTTTGTTATTGAGGAACTGGGGTCACTGCAGTTGTAG ATGAAGGTAGTGCCTTTAGTCAACATTGTGCAATCAATAGGAATTGGTAC AAGAAAAGCTTCGTATGTTAACACACTTGTATCTTGATTACGCATCCCCC CTCTTCTTGATTGATTGGAATGTTTTTTGTTCTGGGTGAGGACACCCTGA AGATCCATGACTGTGCCACAATGAACACACTTCCAGGGAAGCTTTTCCGG AAGAAAAGAGAGCTGACCAACTCCTTACAAAAGCTCGAGGTAAGTAGTAC CTGTGTAGTAGATCGTAATGAGTTGAGCATTCAATCTCATTATCAGCTAA CTGTGCACATTTGTTTGTTTGATACGCACCTTCAGTAAGGTCTGACCTGG GTCTTGCTCTGAGGTCAAATTGATGCTGAGGAAACTGTTGATTGTTGAGA TATGTTGGGCCAACTAATCACCCTCAGTTCTCCATCTCTGATTTACTCAG TTTCTCAAACTGCCACCTTGAGTTGCTGCATTTTGCAACACACACGATTC TAACCTGTGGAAAACCGTGCATTGCTACATCATCCCCTTTCTTGTGCTAC GGGGGTATGTTAGAACATGACATACGAGCTTGCCCTACTCAAGGCGGGCA AAGGCATAGCAACTGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10258:1782..2598+

>mRNA_C-tenellus_contig10258.1.1 ID=mRNA_C-tenellus_contig10258.1.1|Name=mRNA_C-tenellus_contig10258.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=252bp|location=Sequence derived from alignment at C-tenellus_contig10258:1782..2598+ (Choristocarpus tenellus KU2346)
TACTTAGGTGGCCTGCTTGATCTAACAGGTGAGATCTGTCGCTATGGTGT
TGCAAAGGCTACTGAACGTGATTCCGTTGCACTGAAGCAATGCTTGGAGA
CAATCGTGGCGATCCATGACTGTGCCACAATGAACACACTTCCAGGGAAG
CTTTTCCGGAAGAAAAGAGAGCTGACCAACTCCTTACAAAAGCTCGAGAA
CATGACATACGAGCTTGCCCTACTCAAGGCGGGCAAAGGCATAGCAACTG
GG
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