mRNA_C-tenellus_contig10252.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10252.2.1
Unique NamemRNA_C-tenellus_contig10252.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10252.2.1 vs. uniprot
Match: D7FZW6_ECTSI (Complex I intermediate-associated protein 30, mitochondrial (NADH dehydrogenase [ubiquinon) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW6_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 2.420e-41
Identity = 75/129 (58.14%), Postives = 94/129 (72.87%), Query Frame = 1
Query:    1 AQAKFAGFCGSRPPRRLNPLDL-DLFQGFQMRIRGDGRKYEVNVESQTTIPNDVYQGYLHLPQGEWTTVALPFERLLLTGRGQVRFHQRIMDWA-KLHSIGFSLADGIEGPFQLDVAWIAAVQEVHTLG 381
            A+AK  GFCG+R  RR  PL L D ++G +MRIR DGR+YEVN E Q+ I ND+YQGY+  P G+W TV+LP  RLLLTG+GQ+R  QR  D   +L SIGF++ADG+ GPF+LDVAW+A V EV   G
Sbjct:  143 ARAKVGGFCGTRSTRRQEPLVLPDGYRGVEMRIRTDGRQYEVNFEPQSGIINDLYQGYVRTPAGQWATVSLPLNRLLLTGQGQIRDIQRKWDVGMELKSIGFTIADGVGGPFRLDVAWVALVSEVDDEG 271          
BLAST of mRNA_C-tenellus_contig10252.2.1 vs. uniprot
Match: A0A6H5KSW2_9PHAE (CIA30 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSW2_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 4.740e-28
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 1
Query:  112 KYEVNVESQTTIPNDVYQGYLHLPQGEWTTVALPFERLLLTGRGQVRFHQRIMDWA-KLHSIGFSLADGIEGPFQLDVAWIAAVQEV 369
            +YEVN E Q+ I ND+YQGY+  P G+W TV+LP  RLLLTG+GQ+R  QR  D   +L+SIGF++ADG+ GPF+LDVAW+A V EV
Sbjct:   29 RYEVNFEPQSGIINDLYQGYVRTPAGQWATVSLPLNRLLLTGQGQIRDIQRKWDMGMELNSIGFTIADGVGGPFRLDVAWVALVSEV 115          
BLAST of mRNA_C-tenellus_contig10252.2.1 vs. uniprot
Match: A0A067CNK6_SAPPC (CIA30 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CNK6_SAPPC)

HSP 1 Score: 93.6 bits (231), Expect = 1.240e-20
Identity = 49/127 (38.58%), Postives = 73/127 (57.48%), Query Frame = 1
Query:   16 AGFCGSRP--PRRLNPLDLDLFQGFQMRIRGDGRKYEVNVESQTTIPNDVYQGYLHLPQGEWTTVALPFERLLLTGRGQVRFHQRI-MDWAKLHSIGFSLADGIEGPFQLDVAWIAAVQEVHTLGLA 387
            +G+C  R   PR L+   L  ++G  MRI+ DGR Y +N ++    P+D+Y G+L  P  +W    L F   +LT RG V+      +D + L +IG +LAD  EGPFQ+ + WI AV++V T  +A
Sbjct:  104 SGYCAIRGNVPRGLH---LHGYEGLAMRIKTDGRTYRINAQADGWNPHDLYMGFLKAPANKWVEAELAFSDFILTSRGYVQVDDPAKLDPSSLRTIGIALADDKEGPFQISIEWIKAVEKVDTTNIA 227          
BLAST of mRNA_C-tenellus_contig10252.2.1 vs. uniprot
Match: A0A1V9YAQ8_9STRA (CIA30 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAQ8_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.530e-20
Identity = 49/125 (39.20%), Postives = 70/125 (56.00%), Query Frame = 1
Query:   16 AGFCGSRPPRRLNPLDLDLFQGFQMRIRGDGRKYEVNVESQTTIPNDVYQGYLHLPQGEWTTVALPFERLLLTGRGQVRFHQRI-MDWAKLHSIGFSLADGIEGPFQLDVAWIAAVQEVHTLGLA 387
            +G+C  R     + L L  +QG  MRI+ DGR Y +N ++    P+D+Y G+L  P  EW    L F   +LT RG V+    + ++ A L +IG +LAD  EGPF+L + WI AV +V T   A
Sbjct:  105 SGYCAIRG-NVPSGLHLHGYQGLAMRIKSDGRVYRINAQADGWNPHDLYMGFLKAPANEWVEAELAFSDFILTSRGYVQVDDPVKLNPASLRTIGIALADDKEGPFELCIEWIKAVDKVDTTNTA 228          
BLAST of mRNA_C-tenellus_contig10252.2.1 vs. uniprot
Match: A7S7X8_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7S7X8_NEMVE)

HSP 1 Score: 90.5 bits (223), Expect = 4.460e-20
Identity = 44/131 (33.59%), Postives = 76/131 (58.02%), Query Frame = 1
Query:    1 AQAKFAGFCGSRPPRRLN------PLDLDLFQGFQMRIRGDGRKYEVNVESQTTIPNDVYQGYLHLPQGE-WTTVALPFERLLLTGRGQVRFHQRIMDWAKLHSIGFSLADGIEGPFQLDVAWIAAVQEVH 372
            ++AK  G C  R   +++      P D   + G QMRIRGDGR Y +N++  +   +D++Q +++   G  W T+ +PF + +LT  G ++ HQ  MD  ++ + G +LAD  +GPF L++ +I AV  ++
Sbjct:   52 SEAKHTGVCAVRSQPQVDWKGRVVPYDTSEYDGIQMRIRGDGRTYALNIQPDSVRSDDLHQAFMYTRGGPYWETIRMPFSKFILTNSGYLQDHQ--MDIPRMRTFGITLADNNDGPFSLEIDYIKAVLYIY 180          
BLAST of mRNA_C-tenellus_contig10252.2.1 vs. uniprot
Match: A0A8H7BNK6_9FUNG (CIA30 domain-containing protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BNK6_9FUNG)

HSP 1 Score: 89.4 bits (220), Expect = 2.270e-19
Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 1
Query:   61 DLDLFQGFQMRIRGDGRKYEVNVESQTTIPNDVYQGYLHLPQ-GEWTTVALPFERLLLTGRGQVRFHQRIMDWAKLHSIGFSLADGIEGPFQLDVAWIAAVQEVHTLG 381
            D  LF+   +R+RGD RKY VN+++   I  DVYQ  L L + G W TV +PF   +LT  G ++  Q  M   K+ ++GFSL D  EGPF+L+V WI A+    T G
Sbjct:  110 DTSLFRYLAIRVRGDHRKYFVNIQTDGVIATDVYQHRLFLRRPGNWETVMIPFRDFILTNNGMIQEQQIEMFREKVKTVGFSLQDRQEGPFRLEVDWIKAMNTEFTEG 217          
BLAST of mRNA_C-tenellus_contig10252.2.1 vs. uniprot
Match: A0A6P8IGB0_ACTTE (complex I intermediate-associated protein 30, mitochondrial-like isoform X2 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IGB0_ACTTE)

HSP 1 Score: 89.4 bits (220), Expect = 2.560e-19
Identity = 44/127 (34.65%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    1 AQAKFAGFCGSRPPRRLN------PLDLDLFQGFQMRIRGDGRKYEVNVESQTTIPNDVYQGYLHLPQGE-WTTVALPFERLLLTGRGQVRFHQRIMDWAKLHSIGFSLADGIEGPFQLDVAWIAAV 360
            ++AK +G C  R   R++      P D   F G QM+ +GDGR Y +N++  +   +D++Q +L+   G  W T  +PF + +LT  G ++ HQ  MD+ K+ + G +LAD   GPF L++ +I  V
Sbjct:   86 SEAKHSGICAIRSQPRVDWKGSVVPFDTSEFDGIQMKFKGDGRTYALNIQPDSVRSDDLHQSFLYTRGGPYWETARIPFSKFILTNSGYLQDHQ--MDFPKMRTFGITLADHNNGPFSLEIEYIKMV 210          
BLAST of mRNA_C-tenellus_contig10252.2.1 vs. uniprot
Match: UPI00077A6786 (complex I intermediate-associated protein 30, mitochondrial-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A6786)

HSP 1 Score: 87.0 bits (214), Expect = 2.200e-18
Identity = 43/124 (34.68%), Postives = 72/124 (58.06%), Query Frame = 1
Query:   10 KFAGFCGSRPPRRLNPL------DLDLFQGFQMRIRGDGRKYEVNVESQTTIPNDVYQGYLHLPQGE-WTTVALPFERLLLTGRGQVRFHQRIMDWAKLHSIGFSLADGIEGPFQLDVAWIAAV 360
            K+ G C  R   + + +      D+  F G QMR+RGDGR Y  N+++ +   +D++Q ++H   G  W  V +PF + +LT  G ++ HQ  MD+ ++ ++GF+LAD   GPF L++ +I  V
Sbjct:   95 KYTGMCSIRAQPKWDWMGDVVTNDISDFDGIQMRLRGDGRTYAFNIQTHSIREDDIHQTFIHTRGGPLWEIVRIPFTKFVLTNAGYLQDHQ--MDFPRIRTVGFTLADHNTGPFHLEIDYIKMV 216          
BLAST of mRNA_C-tenellus_contig10252.2.1 vs. uniprot
Match: A0A0L0DSY5_THETB (NADH dehydrogenase 1 alpha subcomplex n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DSY5_THETB)

HSP 1 Score: 86.7 bits (213), Expect = 2.810e-18
Identity = 41/120 (34.17%), Postives = 71/120 (59.17%), Query Frame = 1
Query:   16 AGFCGSRPPRRLNPLDLDLFQGFQMRIRGDGRKYEVNVESQTTIPNDVYQGYLHLPQG----EWTTVALPFERLLLTGRGQVRFHQRIMDWAKLHSIGFSLADGIEGPFQLDVAWIAAVQ 363
            +GF   R         L+ +  F++  RGDGR Y+ NV  ++ +P+D++Q  L   +     +W  V +PF+ L++T RG V+  Q  +D  ++ S+GF+LADG++GPF+L +  I A++
Sbjct:   90 SGFASFRTVPGTTVPSLEYYDAFEIVCRGDGRPYQFNVGCESVVPDDLHQAALPTHEASAAADWAVVRIPFDALIMTWRGFVQVEQLKLDSRRITSLGFTLADGVDGPFELAIRDIRAIR 209          
BLAST of mRNA_C-tenellus_contig10252.2.1 vs. uniprot
Match: A0A8H7PJD9_MORIS (CIA30 domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PJD9_MORIS)

HSP 1 Score: 86.7 bits (213), Expect = 5.190e-18
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 1
Query:   61 DLDLFQGFQMRIRGDGRKYEVNVESQTTIPNDVYQGYLHLPQ-GEWTTVALPFERLLLTGRGQVRFHQRIMDWAKLHSIGFSLADGIEGPFQLDVAWIAAVQEVHTLG 381
            D  LF+   MR+RGD R+Y VN+++   I  D+YQ  L L   G+W TV +PF   +LT  G ++  Q  M   K+ ++G S+AD  EGPF++++ WI A+    T G
Sbjct:  138 DTTLFRYLAMRVRGDDRRYFVNIQTDGVIQTDLYQHRLFLQNAGQWQTVMIPFRDFVLTNNGMIQEDQIDMMREKVKTVGISIADREEGPFEIEIDWIKAMNTESTEG 245          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10252.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZW6_ECTSI2.420e-4158.14Complex I intermediate-associated protein 30, mito... [more]
A0A6H5KSW2_9PHAE4.740e-2859.77CIA30 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A067CNK6_SAPPC1.240e-2038.58CIA30 domain-containing protein n=2 Tax=Saprolegni... [more]
A0A1V9YAQ8_9STRA2.530e-2039.20CIA30 domain-containing protein n=1 Tax=Achlya hyp... [more]
A7S7X8_NEMVE4.460e-2033.59Predicted protein n=2 Tax=Nematostella vectensis T... [more]
A0A8H7BNK6_9FUNG2.270e-1943.52CIA30 domain-containing protein n=1 Tax=Apophysomy... [more]
A0A6P8IGB0_ACTTE2.560e-1934.65complex I intermediate-associated protein 30, mito... [more]
UPI00077A67862.200e-1834.68complex I intermediate-associated protein 30, mito... [more]
A0A0L0DSY5_THETB2.810e-1834.17NADH dehydrogenase 1 alpha subcomplex n=1 Tax=Thec... [more]
A0A8H7PJD9_MORIS5.190e-1839.81CIA30 domain-containing protein n=1 Tax=Mortierell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10252contigC-tenellus_contig10252:4262..5523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZW6
Preferred nameNDUFAF1
PFAMsCIA30
Model size399
Max annot lvl2759|Eukaryota
KEGG koko:K18159
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
GOsGO:0001666,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005829,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009266,GO:0009408,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031667,GO:0031966,GO:0031967,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0036293,GO:0036296,GO:0042594,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050896,GO:0051082,GO:0055086,GO:0055093,GO:0055114,GO:0065003,GO:0070469,GO:0070482,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Exons2
Evalue3.96e-42
EggNOG OGsKOG2435@1|root,KOG2435@2759|Eukaryota
Ec32 ortholog descriptionComplex I intermediate-associated protein 30, mitochondrial precursor (NADH dehydrogenase [ubiquinon])
Ec32 orthologEc-22_003820.1
Descriptionmitochondrial respiratory chain complex I assembly
Cds size399
COG categoryS
BRITEko00000,ko00001,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789123.2059958-CDS-C-tenellus_contig10252:4261..43741680789123.2059958-CDS-C-tenellus_contig10252:4261..4374Choristocarpus tenellus KU2346CDSC-tenellus_contig10252 4262..4374 +
1680789123.218681-CDS-C-tenellus_contig10252:5237..55231680789123.218681-CDS-C-tenellus_contig10252:5237..5523Choristocarpus tenellus KU2346CDSC-tenellus_contig10252 5238..5523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10252.2.1prot_C-tenellus_contig10252.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10252 4262..5523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10252.2.1

>prot_C-tenellus_contig10252.2.1 ID=prot_C-tenellus_contig10252.2.1|Name=mRNA_C-tenellus_contig10252.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=133bp
AQAKFAGFCGSRPPRRLNPLDLDLFQGFQMRIRGDGRKYEVNVESQTTIP
NDVYQGYLHLPQGEWTTVALPFERLLLTGRGQVRFHQRIMDWAKLHSIGF
SLADGIEGPFQLDVAWIAAVQEVHTLGLALEEE
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mRNA from alignment at C-tenellus_contig10252:4262..5523+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10252.2.1 ID=mRNA_C-tenellus_contig10252.2.1|Name=mRNA_C-tenellus_contig10252.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1262bp|location=Sequence derived from alignment at C-tenellus_contig10252:4262..5523+ (Choristocarpus tenellus KU2346)
GCACAGGCGAAGTTTGCGGGGTTCTGTGGTTCGCGGCCACCGAGAAGATT GAATCCGCTGGACCTAGACCTTTTTCAGGGATTTCAGATGCGAATTCGGG GGGATGGGAGAAAGTGAGAGGACACGCAAATGGTCCAGTGTTTGCGTCCT GCCGCTTGCTGTAATGACCCCCCTTTCTTTTCCTGGACAAGAGATCGATC TCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTATTGTGT CCGAGCACGTGGACCCAGAGGAGTGTCTTTGTGCCTGTCCCCATCCCATC GCCCGTCGATTGAAGAGAAAGGTTTTATTTTTTTACCTAGCAGAAGAAGA CTCGTGTGTGTGTGTGTGTGTGTGTATGTGCTTGTTTACATCTTCCTCTG TTTCTGCCATTACGGCTTTTGAGCCAGTGCTACAGTATCGTGCTGTGTGC ATGGTAGGTAGTTCCAGTGCATGTAGATTCGTTCTTGGGGGCGTCCTTCC GTCTTTCCTCCCCTATCGTCGTTGGAGGGTGACGTGCAACCAATGGCACT TGGGATGTGACATAGTTATGATGTACCCGACTACAAAACCCACAACAATG CTTAGGAAAAACAAGCGCGTGCTTAGAACGTGCTTGTTATATATATACAT ATATATACATACAAGCATACATTTCTTACAAATGCCATAGAAAGATAGAT AGATAGGTAAGGTGTAATGATGTCTTGTGGTTATGCCTACTAGTGCCTTG TGTGCTTTTTTTTTCTTGTGTTTTATACTCTTGAAAAAGAAAAAAGAACG AGGTTCTACAAACACGTTTTTTAACCTTTTTTTGGGGGGGGGGATCTTAG GCTTTTTAGGGTCGGTTGAGGTGGCTGCACTGCAGTCCCTAGCGCTCTTG TGTACTTCCCACACCTCCACCTCCTCCTCCTCCTCCAAACTTTTGACATG AGTTATCTTTTTTTTTGGGGTCCCAGATATGAGGTGAATGTGGAATCCCA GACGACCATCCCTAATGACGTTTATCAGGGGTACCTTCACCTTCCCCAAG GGGAATGGACTACAGTGGCACTGCCATTTGAGCGGTTGCTTCTCACCGGG AGGGGACAGGTCCGCTTCCACCAGAGGATAATGGATTGGGCGAAGCTACA CTCGATCGGATTTTCATTGGCCGATGGAATTGAGGGACCTTTTCAATTGG ATGTGGCATGGATTGCTGCTGTGCAAGAGGTACATACACTGGGGCTTGCC TTGGAGGAGGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10252:4262..5523+

>mRNA_C-tenellus_contig10252.2.1 ID=mRNA_C-tenellus_contig10252.2.1|Name=mRNA_C-tenellus_contig10252.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=399bp|location=Sequence derived from alignment at C-tenellus_contig10252:4262..5523+ (Choristocarpus tenellus KU2346)
GCACAGGCGAAGTTTGCGGGGTTCTGTGGTTCGCGGCCACCGAGAAGATT
GAATCCGCTGGACCTAGACCTTTTTCAGGGATTTCAGATGCGAATTCGGG
GGGATGGGAGAAAATATGAGGTGAATGTGGAATCCCAGACGACCATCCCT
AATGACGTTTATCAGGGGTACCTTCACCTTCCCCAAGGGGAATGGACTAC
AGTGGCACTGCCATTTGAGCGGTTGCTTCTCACCGGGAGGGGACAGGTCC
GCTTCCACCAGAGGATAATGGATTGGGCGAAGCTACACTCGATCGGATTT
TCATTGGCCGATGGAATTGAGGGACCTTTTCAATTGGATGTGGCATGGAT
TGCTGCTGTGCAAGAGGTACATACACTGGGGCTTGCCTTGGAGGAGGAG
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