mRNA_C-tenellus_contig1025.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1025.4.1
Unique NamemRNA_C-tenellus_contig1025.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1025.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1025contigC-tenellus_contig1025:12455..12896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size173
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789122.8857336-CDS-C-tenellus_contig1025:12454..125441680789122.8857336-CDS-C-tenellus_contig1025:12454..12544Choristocarpus tenellus KU2346CDSC-tenellus_contig1025 12455..12544 +
1680789122.897216-CDS-C-tenellus_contig1025:12815..128961680789122.897216-CDS-C-tenellus_contig1025:12815..12896Choristocarpus tenellus KU2346CDSC-tenellus_contig1025 12816..12896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1025.4.1prot_C-tenellus_contig1025.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1025 12455..12896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1025.4.1

>prot_C-tenellus_contig1025.4.1 ID=prot_C-tenellus_contig1025.4.1|Name=mRNA_C-tenellus_contig1025.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=57bp
MSRLRPVQASKPKRRNWKGRRMLCCRMLSLCNPYHLLHSRTAFSFFMELP
LQRCSWW
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mRNA from alignment at C-tenellus_contig1025:12455..12896+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1025.4.1 ID=mRNA_C-tenellus_contig1025.4.1|Name=mRNA_C-tenellus_contig1025.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=442bp|location=Sequence derived from alignment at C-tenellus_contig1025:12455..12896+ (Choristocarpus tenellus KU2346)
ATGAGCCGACTCCGACCCGTGCAAGCCAGCAAGCCAAAAAGAAGGAACTG
GAAAGGAAGGCGGATGCTCTGTTGCAGGATGCTCTCCTTGGTGAGGAGGC
AGTCTTGATGTTATTGTTCTTTGTCCAAGCGAGATCTCATTGTCTGTTCA
AGTGGTAAGGAAAAGTTGAACCTCTCTAAGCAGCTGTGCATTGTCAAAAA
ATGGATCTCTATATGTGTTAGTTTCCCATCAGTCCGTGCGGCGTGATAAA
TACCCACTTACCGACGCTTGGCAAGGATTGGTTTACTTTCTCTGTATATT
TGCCCAGCCGAACTGACTTAGTCCCTGTGCCATTGTATGTCACCAATCCT
ATCCTGTGGAGTGTAACCCATATCATTTGCTCCATAGCCGTACCGCTTTT
TCGTTCTTTATGGAGCTACCGTTACAACGCTGTTCCTGGTGG
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Coding sequence (CDS) from alignment at C-tenellus_contig1025:12455..12896+

>mRNA_C-tenellus_contig1025.4.1 ID=mRNA_C-tenellus_contig1025.4.1|Name=mRNA_C-tenellus_contig1025.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=171bp|location=Sequence derived from alignment at C-tenellus_contig1025:12455..12896+ (Choristocarpus tenellus KU2346)
ATGAGCCGACTCCGACCCGTGCAAGCCAGCAAGCCAAAAAGAAGGAACTG
GAAAGGAAGGCGGATGCTCTGTTGCAGGATGCTCTCCTTGTGTAACCCAT
ATCATTTGCTCCATAGCCGTACCGCTTTTTCGTTCTTTATGGAGCTACCG
TTACAACGCTGTTCCTGGTGG
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