mRNA_C-tenellus_contig10246.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10246.4.1
Unique NamemRNA_C-tenellus_contig10246.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10246.4.1 vs. uniprot
Match: G7PVF2_MACFA (Emopamil-binding-related protein (Fragment) n=1 Tax=Macaca fascicularis TaxID=9541 RepID=G7PVF2_MACFA)

HSP 1 Score: 94.4 bits (233), Expect = 6.400e-23
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   10 QAFLCTIELYGCWMTFAPEWLLDSPSLNTDNPVFLWVYLFFMNGLWVFVPSILLWESMAQLIRACQ 207
            Q  LC  ELYGCWMTF PEWL  SP+LNT N ++ WVYLFF NG+WV +P +LLW+S  +L +  Q
Sbjct:   85 QITLCVCELYGCWMTFLPEWLTRSPNLNTSNWLYCWVYLFFFNGVWVLIPGLLLWQSWVELKKMHQ 150
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BLAST of mRNA_C-tenellus_contig10246.4.1 vs. uniprot
Match: A0A7S3DH16_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DH16_9EUKA)

HSP 1 Score: 95.5 bits (236), Expect = 1.060e-22
Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    1 QPW----QAFLCTIELYGCWMTFAPEWLLDSPSLNTDNPVFLWVYLFFMNGLWVFVPSILLWESMAQLIRAC 204
            +PW    Q  LCT ELYG WMTF PEW+  SP+L TD+PV+LW+YL FMNGLWV+VP +LL +S   + RAC
Sbjct:  106 KPWRHVLQVILCTAELYGGWMTFCPEWVEGSPNLVTDDPVYLWIYLVFMNGLWVWVPILLLVDSCLVITRAC 177
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BLAST of mRNA_C-tenellus_contig10246.4.1 vs. uniprot
Match: EBPL_MOUSE (Emopamil-binding protein-like n=10 Tax=Tetrapoda TaxID=32523 RepID=EBPL_MOUSE)

HSP 1 Score: 94.7 bits (234), Expect = 1.370e-22
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:   10 QAFLCTIELYGCWMTFAPEWLLDSPSLNTDNPVFLWVYLFFMNGLWVFVPSILLWESMAQL 192
            Q  LC  ELYGCWMTF PEWL+ SPSLNT + ++LWVYL F NGLWV +P +LLW+S  +L
Sbjct:  131 QIVLCVCELYGCWMTFFPEWLVGSPSLNTSSWLYLWVYLVFFNGLWVLIPGLLLWQSWVEL 191
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BLAST of mRNA_C-tenellus_contig10246.4.1 vs. uniprot
Match: L8HC31_ACACA (Emopamil binding protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HC31_ACACA)

HSP 1 Score: 95.5 bits (236), Expect = 1.390e-22
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:    1 QPW----QAFLCTIELYGCWMTFAPEWLLDSPSLNTDNPVFLWVYLFFMNGLWVFVPSILLWESMAQLIRA 201
            +PW    Q FLC +ELYG WMTF PEWL  +P+L+  NPV+LWVYL+F NG+WV +P+ILLW+S   + +A
Sbjct:  129 KPWRHFVQVFLCVMELYGGWMTFCPEWLTGNPNLDGSNPVYLWVYLWFANGIWVVIPAILLWQSFVAMNQA 199
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BLAST of mRNA_C-tenellus_contig10246.4.1 vs. uniprot
Match: A0A2K5W1I6_MACFA (EXPERA domain-containing protein n=1 Tax=Macaca fascicularis TaxID=9541 RepID=A0A2K5W1I6_MACFA)

HSP 1 Score: 94.4 bits (233), Expect = 4.800e-22
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   10 QAFLCTIELYGCWMTFAPEWLLDSPSLNTDNPVFLWVYLFFMNGLWVFVPSILLWESMAQLIRACQ 207
            Q  LC  ELYGCWMTF PEWL  SP+LNT N ++ WVYLFF NG+WV +P +LLW+S  +L +  Q
Sbjct:  175 QITLCVCELYGCWMTFLPEWLTRSPNLNTSNWLYCWVYLFFFNGVWVLIPGLLLWQSWVELKKMHQ 240
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BLAST of mRNA_C-tenellus_contig10246.4.1 vs. uniprot
Match: EBPL_HUMAN (Emopamil-binding protein-like n=30 Tax=Simiiformes TaxID=314293 RepID=EBPL_HUMAN)

HSP 1 Score: 92.8 bits (229), Expect = 7.670e-22
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   10 QAFLCTIELYGCWMTFAPEWLLDSPSLNTDNPVFLWVYLFFMNGLWVFVPSILLWESMAQLIRACQ 207
            Q  LC  ELYGCWMTF PEWL  SP+LNT N ++ W+YLFF NG+WV +P +LLW+S  +L +  Q
Sbjct:  131 QITLCVCELYGCWMTFLPEWLTRSPNLNTSNWLYCWLYLFFFNGVWVLIPGLLLWQSWLELKKMHQ 196
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BLAST of mRNA_C-tenellus_contig10246.4.1 vs. uniprot
Match: A0A286XUI8_CAVPO (EBP like n=2 Tax=Cavia porcellus TaxID=10141 RepID=A0A286XUI8_CAVPO)

HSP 1 Score: 91.3 bits (225), Expect = 7.820e-22
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:   10 QAFLCTIELYGCWMTFAPEWLLDSPSLNTDNPVFLWVYLFFMNGLWVFVPSILLWESMAQL 192
            Q  LC  ELYGCWMTF PEWL+ SP+LNT++ ++ WVYL F NG+WV +P +LLW+S  +L
Sbjct:   74 QISLCVCELYGCWMTFCPEWLVGSPNLNTNSWMYFWVYLVFFNGVWVLIPGLLLWQSWLEL 134
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BLAST of mRNA_C-tenellus_contig10246.4.1 vs. uniprot
Match: A0A7N9CZV0_MACFA (EXPERA domain-containing protein n=1 Tax=Macaca fascicularis TaxID=9541 RepID=A0A7N9CZV0_MACFA)

HSP 1 Score: 94.4 bits (233), Expect = 8.180e-22
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   10 QAFLCTIELYGCWMTFAPEWLLDSPSLNTDNPVFLWVYLFFMNGLWVFVPSILLWESMAQLIRACQ 207
            Q  LC  ELYGCWMTF PEWL  SP+LNT N ++ WVYLFF NG+WV +P +LLW+S  +L +  Q
Sbjct:  119 QITLCVCELYGCWMTFLPEWLTRSPNLNTSNWLYCWVYLFFFNGVWVLIPGLLLWQSWVELKKMHQ 184
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BLAST of mRNA_C-tenellus_contig10246.4.1 vs. uniprot
Match: UPI0010A44B6D (emopamil-binding protein-like n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=UPI0010A44B6D)

HSP 1 Score: 92.8 bits (229), Expect = 8.190e-22
Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:   10 QAFLCTIELYGCWMTFAPEWLLDSPSLNTDNPVFLWVYLFFMNGLWVFVPSILLWESMAQLIRACQVAK 216
            Q  LC  ELYG WMTF P+WL+ SPSLNT N ++LWVYL F NG+WV VP +LLW+S   L R+ Q  K
Sbjct:  134 QITLCVCELYGGWMTFCPDWLVGSPSLNTSNWLYLWVYLMFFNGIWVVVPGLLLWQSWGALRRSHQFQK 202
[Close]
BLAST of mRNA_C-tenellus_contig10246.4.1 vs. uniprot
Match: A0A8C3ZE60_9TELE (EBP like n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3ZE60_9TELE)

HSP 1 Score: 92.8 bits (229), Expect = 8.940e-22
Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:   10 QAFLCTIELYGCWMTFAPEWLLDSPSLNTDNPVFLWVYLFFMNGLWVFVPSILLWESMAQLIRACQVAK 216
            Q  LC  ELYG WMTF P+WL+ SPSLNT N ++LWVYL F NG+WV VP +LLW+S   L R+ Q  K
Sbjct:  138 QITLCVCELYGGWMTFCPDWLVGSPSLNTSNWLYLWVYLMFFNGIWVVVPGLLLWQSWGALRRSHQFQK 206
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10246.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G7PVF2_MACFA6.400e-2359.09Emopamil-binding-related protein (Fragment) n=1 Ta... [more]
A0A7S3DH16_9EUKA1.060e-2259.72Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
EBPL_MOUSE1.370e-2263.93Emopamil-binding protein-like n=10 Tax=Tetrapoda T... [more]
L8HC31_ACACA1.390e-2256.34Emopamil binding protein n=1 Tax=Acanthamoeba cast... [more]
A0A2K5W1I6_MACFA4.800e-2259.09EXPERA domain-containing protein n=1 Tax=Macaca fa... [more]
EBPL_HUMAN7.670e-2257.58Emopamil-binding protein-like n=30 Tax=Simiiformes... [more]
A0A286XUI8_CAVPO7.820e-2259.02EBP like n=2 Tax=Cavia porcellus TaxID=10141 RepID... [more]
A0A7N9CZV0_MACFA8.180e-2259.09EXPERA domain-containing protein n=1 Tax=Macaca fa... [more]
UPI0010A44B6D8.190e-2259.42emopamil-binding protein-like n=1 Tax=Denticeps cl... [more]
A0A8C3ZE60_9TELE8.940e-2259.42EBP like n=1 Tax=Denticeps clupeoides TaxID=299321... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10246contigC-tenellus_contig10246:5122..5588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog10090.ENSMUSP00000022494
Preferred nameEBPL
PFAMsEBP
Model size216
Max annot lvl33208|Metazoa
KEGG rclassRC00911
KEGG koko:K01824
KEGG ReactionR03353,R04804,R07484
KEGG Pathwayko00100,ko01100,ko01110,map00100,map01100,map01110
KEGG ModuleM00101
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0012505,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons2
Evalue2.24e-23
EggNOG OGsKOG4826@1|root,KOG4826@2759|Eukaryota,39CRH@33154|Opisthokonta,3BIIV@33208|Metazoa,3D1RQ@33213|Bilateria,48B8C@7711|Chordata,490P1@7742|Vertebrata,3J81Y@40674|Mammalia,35M3C@314146|Euarchontoglires,4PZFT@9989|Rodentia
EC5.3.3.5
DescriptionEmopamil binding protein
Cds size216
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789122.831937-CDS-C-tenellus_contig10246:5121..52201680789122.831937-CDS-C-tenellus_contig10246:5121..5220Choristocarpus tenellus KU2346CDSC-tenellus_contig10246 5122..5220 -
1680789122.8484259-CDS-C-tenellus_contig10246:5471..55881680789122.8484259-CDS-C-tenellus_contig10246:5471..5588Choristocarpus tenellus KU2346CDSC-tenellus_contig10246 5472..5588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10246.4.1prot_C-tenellus_contig10246.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10246 5122..5588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10246.4.1

>prot_C-tenellus_contig10246.4.1 ID=prot_C-tenellus_contig10246.4.1|Name=mRNA_C-tenellus_contig10246.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=72bp
QPWQAFLCTIELYGCWMTFAPEWLLDSPSLNTDNPVFLWVYLFFMNGLWV
FVPSILLWESMAQLIRACQVAK
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mRNA from alignment at C-tenellus_contig10246:5122..5588-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10246.4.1 ID=mRNA_C-tenellus_contig10246.4.1|Name=mRNA_C-tenellus_contig10246.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=467bp|location=Sequence derived from alignment at C-tenellus_contig10246:5122..5588- (Choristocarpus tenellus KU2346)
CAACCTTGGCAGGCTTTCTTGTGCACAATAGAGCTTTATGGGTGCTGGAT
GACCTTTGCCCCAGAGTGGCTCTTGGACAGCCCGTCCCTTAACACTGACA
ATCCTGTATTCCTATGGGTAAGTTGGGCTTACAGCATTTACTATTAAGAT
CACCGCACCTTATTTCGCTCTACCAACTGTCCTGCCCTAACTACTTCAGC
ACTAGTGAACATTTTGCCCCCCCAAAAGGTACACCTTTCTACCCTAACTC
TATAATACTACATACCTTTTTTTGTCACTACTGTACTCTTACGCACCAAG
CATCTATTGTATTGTTGTGGACGTGCATTATCTATCCCCCCCCAAAAAAA
AAAAAAAAAAAAAAAAAGGTGTACCTTTTCTTCATGAACGGCCTTTGGGT
CTTTGTTCCGAGCATTCTTTTGTGGGAGTCGATGGCACAGCTAATTCGAG
CATGTCAAGTGGCCAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10246:5122..5588-

>mRNA_C-tenellus_contig10246.4.1 ID=mRNA_C-tenellus_contig10246.4.1|Name=mRNA_C-tenellus_contig10246.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=216bp|location=Sequence derived from alignment at C-tenellus_contig10246:5122..5588- (Choristocarpus tenellus KU2346)
CAACCTTGGCAGGCTTTCTTGTGCACAATAGAGCTTTATGGGTGCTGGAT
GACCTTTGCCCCAGAGTGGCTCTTGGACAGCCCGTCCCTTAACACTGACA
ATCCTGTATTCCTATGGGTGTACCTTTTCTTCATGAACGGCCTTTGGGTC
TTTGTTCCGAGCATTCTTTTGTGGGAGTCGATGGCACAGCTAATTCGAGC
ATGTCAAGTGGCCAAG
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