mRNA_C-tenellus_contig10237.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10237.3.1
Unique NamemRNA_C-tenellus_contig10237.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10237.3.1 vs. uniprot
Match: A0A6H5KHI5_9PHAE (Val_tRNA-synt_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHI5_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 6.380e-31
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:    1 QVHIQLRGLVDFDVEITKLQKQLDTKVESQVISLKKKMEAPGYMEKVPPAVREGNEKKLAEFSAQRDSILKAIEQFRSLKI 243
            QV++QLRG+VDFDVEI KLQKQLDTK+E Q+  L KKMEAPGY +KVP AVRE N KK AEF AQ+DS+LKA++QF  LKI
Sbjct:   31 QVYVQLRGMVDFDVEIKKLQKQLDTKIEPQITMLVKKMEAPGYEDKVPEAVRETNSKKKAEFEAQKDSVLKAMQQFEGLKI 111
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BLAST of mRNA_C-tenellus_contig10237.3.1 vs. uniprot
Match: D8LT18_ECTSI (Valine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT18_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.310e-27
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:    1 QVHIQLRGLVDFDVEITKLQKQLDTKVESQVISLKKKMEAPGYMEKVPPAVREGNEKKLAEFSAQRDSILKAIEQFRSLKI 243
            QV++QLRG+VDFDVEI KLQKQLDTK+E Q+  L KKMEAPGY+ KVP AVRE N KK AEF AQ+DS+LKA++QF  LKI
Sbjct:  992 QVYVQLRGMVDFDVEIKKLQKQLDTKIEPQITMLVKKMEAPGYVNKVPEAVRETNSKKKAEFEAQKDSVLKAMQQFEGLKI 1072
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BLAST of mRNA_C-tenellus_contig10237.3.1 vs. uniprot
Match: A0A835ZF04_9STRA (Valine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF04_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.320e-17
Identity = 42/80 (52.50%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:    4 VHIQLRGLVDFDVEITKLQKQLDTKVESQVISLKKKMEAPGYMEKVPPAVREGNEKKLAEFSAQRDSILKAIEQFRSLKI 243
            +++QL+GLVDFD EI KL+ QL+TKV+  +  L+KKM   GYM KVP ++R+ N KKL E  AQ D I+KAI+ F+++K+
Sbjct:  995 LYVQLKGLVDFDAEIAKLEGQLETKVKPAIEQLQKKMAMEGYMVKVPESIRDTNTKKLEELQAQADGIIKAIDNFKTMKL 1074
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BLAST of mRNA_C-tenellus_contig10237.3.1 vs. uniprot
Match: A0A6V1PAS2_HETAK (Valine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PAS2_HETAK)

HSP 1 Score: 70.1 bits (170), Expect = 3.430e-12
Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:    1 QVHIQLRGLVDFDVEITKLQKQLDTKVESQVISLKKKMEAPGYMEKVPPAVREGNEKKLAEFSAQRDSILKAIEQFRSL 237
            QVHI LRGLV+F+ E+ KL+ QL  K+   + +L +KM A GY +KVP  V+  N++K+ E+ AQ ++I KAIE F+SL
Sbjct: 1011 QVHILLRGLVNFEEEVAKLEAQLADKLRPLMENLDRKMNAAGY-DKVPDKVKANNQQKMDEYKAQEENINKAIENFKSL 1088
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BLAST of mRNA_C-tenellus_contig10237.3.1 vs. uniprot
Match: L8HGI8_ACACA (Valine--tRNA ligase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HGI8_ACACA)

HSP 1 Score: 65.9 bits (159), Expect = 1.060e-10
Identity = 33/80 (41.25%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:    1 QVHIQLRGLVDFDVEITKLQKQLDTKVESQVISLKKKMEAPGYMEKVPPAVREGNEKKLAEFSAQRDSILKAIEQFRSLK 240
            ++HI L+GL+D DVE+ KL+K+L     +Q+ +L+KKM+AP Y +KVP AV++ N +++ + + + ++I +AIE+F+++K
Sbjct:  944 EIHIFLKGLIDPDVEVKKLEKKLGEST-TQLETLEKKMKAPMYEDKVPAAVKQSNTERVGKLNQEIEAIKQAIEKFKAMK 1022
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BLAST of mRNA_C-tenellus_contig10237.3.1 vs. uniprot
Match: A0A6A7G606_9CRUS (Valine--tRNA ligase n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G606_9CRUS)

HSP 1 Score: 61.6 bits (148), Expect = 3.280e-9
Identity = 33/81 (40.74%), Postives = 54/81 (66.67%), Query Frame = 1 
Query:    1 QVHIQLRGLVDFDVEITKLQKQLDTKVESQVISLKKKMEAPGYMEKVPPAVREGNEKKLAEFSAQRDSILKAIEQFRSLKI 243
            +VHI L+GLVDF  ++ KL KQ  +K+E  + SLK K++ P Y+EKVP +V+E + +K      +   +L++I+Q  SL++
Sbjct:  954 EVHIVLKGLVDFQAQLKKLAKQ-HSKIEGSIKSLKAKLDNPKYLEKVPVSVQEADREKYESRKEESIKLLESIQQLESLQL 1033
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BLAST of mRNA_C-tenellus_contig10237.3.1 vs. uniprot
Match: N4TP51_FUSC1 (Valine--tRNA ligase n=58 Tax=Fusarium TaxID=5506 RepID=N4TP51_FUSC1)

HSP 1 Score: 61.2 bits (147), Expect = 4.490e-9
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    4 VHIQLRGLVDFDVEITKLQKQLDTKVESQVISLKKKMEAPGYMEKVPPAVREGNEKKLAEFSAQRDSILKAIEQFRSLKI 243
            V + ++G VD D EI K QK+LD K +S +   +K +  PGY+EKV  AVRE +EK+LA+   + +S  + I+QF  LK+
Sbjct: 1013 VFLHVKGRVDLDAEIAKAQKKLD-KAKSSIQKQEKILNDPGYLEKVSDAVRETDEKRLADAKQELNSFEETIKQFEQLKL 1091
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BLAST of mRNA_C-tenellus_contig10237.3.1 vs. uniprot
Match: N1RHF0_FUSC4 (Valine--tRNA ligase n=1 Tax=Fusarium oxysporum f. sp. cubense (strain race 4) TaxID=2502994 RepID=N1RHF0_FUSC4)

HSP 1 Score: 61.2 bits (147), Expect = 4.530e-9
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    4 VHIQLRGLVDFDVEITKLQKQLDTKVESQVISLKKKMEAPGYMEKVPPAVREGNEKKLAEFSAQRDSILKAIEQFRSLKI 243
            V + ++G VD D EI K QK+LD K +S +   +K +  PGY+EKV  AVRE +EK+LA+   + +S  + I+QF  LK+
Sbjct: 1467 VFLHVKGRVDLDAEIAKAQKKLD-KAKSSIQKQEKILNDPGYLEKVSDAVRETDEKRLADAKQELNSFEETIKQFEQLKL 1545
[Close]
BLAST of mRNA_C-tenellus_contig10237.3.1 vs. uniprot
Match: A0A428TDU5_9HYPO (Valine--tRNA ligase n=1 Tax=Fusarium sp. AF-4 TaxID=1325735 RepID=A0A428TDU5_9HYPO)

HSP 1 Score: 58.9 bits (141), Expect = 2.850e-8
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:    4 VHIQLRGLVDFDVEITKLQKQLDTKVESQVISLKKKMEAPGYMEKVPPAVREGNEKKLAEFSAQRDSILKAIEQFRSLKI 243
            V + ++G VD D EITK QK+LD K  S +   +K +  PGY+EK   A+RE ++K+LA+   +  S  + I+QF  LK+
Sbjct:  500 VFLHVKGRVDIDAEITKAQKKLD-KARSSIQKQEKILNDPGYLEKASDAIRETDQKRLADAKQELTSFEETIKQFEQLKL 578
[Close]
BLAST of mRNA_C-tenellus_contig10237.3.1 vs. uniprot
Match: C7YQE7_FUSV7 (Valine--tRNA ligase n=17 Tax=Fusarium TaxID=5506 RepID=C7YQE7_FUSV7)

HSP 1 Score: 57.0 bits (136), Expect = 1.400e-7
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 1 
Query:    4 VHIQLRGLVDFDVEITKLQKQLDTKVESQVISLKKKMEAPGYMEKVPPAVREGNEKKLAEFSAQRDSILKAIEQFRSLKI 243
            V + ++G VD D EI K QK+LD K  S +   +K +  PGY+EK   A+RE ++K+LA+   +  S  + I+QF  LK+
Sbjct: 1010 VFLHVKGRVDIDAEIVKAQKKLD-KARSSIQKQEKILNDPGYLEKASDAIRETDQKRLADAKQELTSFEETIKQFEQLKL 1088
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10237.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHI5_9PHAE6.380e-3171.60Val_tRNA-synt_C domain-containing protein n=1 Tax=... [more]
D8LT18_ECTSI1.310e-2771.60Valine--tRNA ligase n=1 Tax=Ectocarpus siliculosus... [more]
A0A835ZF04_9STRA1.320e-1752.50Valine--tRNA ligase n=1 Tax=Tribonema minus TaxID=... [more]
A0A6V1PAS2_HETAK3.430e-1249.37Valine--tRNA ligase n=1 Tax=Heterosigma akashiwo T... [more]
L8HGI8_ACACA1.060e-1041.25Valine--tRNA ligase n=1 Tax=Acanthamoeba castellan... [more]
A0A6A7G606_9CRUS3.280e-940.74Valine--tRNA ligase n=1 Tax=Hirondellea gigas TaxI... [more]
N4TP51_FUSC14.490e-943.75Valine--tRNA ligase n=58 Tax=Fusarium TaxID=5506 R... [more]
N1RHF0_FUSC44.530e-943.75Valine--tRNA ligase n=1 Tax=Fusarium oxysporum f. ... [more]
A0A428TDU5_9HYPO2.850e-841.25Valine--tRNA ligase n=1 Tax=Fusarium sp. AF-4 TaxI... [more]
C7YQE7_FUSV71.400e-740.00Valine--tRNA ligase n=17 Tax=Fusarium TaxID=5506 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10237contigC-tenellus_contig10237:1069..2897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LT18
PFAMsAnticodon_1,Val_tRNA-synt_C,tRNA-synt_1
Model size246
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01873
KEGG ReactionR03665
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Exons3
Evalue2.15e-28
EggNOG OGsCOG0525@1|root,KOG0432@2759|Eukaryota
EC6.1.1.9
Descriptionvalyl-tRNA aminoacylation
Cds size246
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789122.6411273-CDS-C-tenellus_contig10237:1068..11341680789122.6411273-CDS-C-tenellus_contig10237:1068..1134Choristocarpus tenellus KU2346CDSC-tenellus_contig10237 1069..1134 +
1680789122.6542745-CDS-C-tenellus_contig10237:1678..17231680789122.6542745-CDS-C-tenellus_contig10237:1678..1723Choristocarpus tenellus KU2346CDSC-tenellus_contig10237 1679..1723 +
1680789122.6679628-CDS-C-tenellus_contig10237:2762..28971680789122.6679628-CDS-C-tenellus_contig10237:2762..2897Choristocarpus tenellus KU2346CDSC-tenellus_contig10237 2763..2897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10237.3.1prot_C-tenellus_contig10237.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10237 1069..2897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10237.3.1

>prot_C-tenellus_contig10237.3.1 ID=prot_C-tenellus_contig10237.3.1|Name=mRNA_C-tenellus_contig10237.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=82bp
QVHIQLRGLVDFDVEITKLQKQLDTKVESQVISLKKKMEAPGYMEKVPPA
VREGNEKKLAEFSAQRDSILKAIEQFRSLKI*
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mRNA from alignment at C-tenellus_contig10237:1069..2897+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10237.3.1 ID=mRNA_C-tenellus_contig10237.3.1|Name=mRNA_C-tenellus_contig10237.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1829bp|location=Sequence derived from alignment at C-tenellus_contig10237:1069..2897+ (Choristocarpus tenellus KU2346)
CAGGTACACATTCAGCTCAGAGGACTGGTGGACTTCGACGTGGAGATCAC
CAAGCTGCAGAAGCAGGTACTCTACTACCTTCTCCGGGAGAGTTCGTTTG
CCTCTCTCTTTTCTTTTTTCTTTTTTTTACTGATGCTGACTGCTTGACGT
GGGGTTGGTCTCCATTCTATCGTTTTCCTTTGCGGCCAGATGGGGTTAGG
GTTTAATGGAGCATGCCTTGAGAAGGTAAGGCACTGCGCTTACGATACCC
TTCCGTGGGGTGGCTCCGTTTTTATAACGACTGCGCCTGTGCTCCTCTCT
TGGAGAGATTGCAGTCTTTCGATGTTTTTGTGCCCTTCGCCTTGTAGGGT
GCTTATCGCCTCACTTCATTTGCTTTAACACACAGTTAGTAATGCATAGT
GGTTTGTTTGTTTGTTTTTGGGGGGGGGGGATTTTTTGTTTGTTTGTTTT
CAGGTGATGGTCTCGTTGTGAATCAATGTATACAGAGGTTGCCTAGCCCT
AACCCTAACCCTACAGTGTTTCTCTGCAGCCTTGACAAGAAATGTGATGT
CAGACAAGACCATTTACCTGCTTTCTGCTCTCCCCACACCCGCCTGCCCT
ACTGCACCAGTTGGACACCAAGGTTGAGTCGCAGGTCATCTCCCTCAAGA
AAAAGGTGATGAAGCTCTTCCCCTCGCCCCCCTCTCCTCCCTTTTTTGAA
AGTTTGGTGTATTCTGTGTCTCTGTCTGTGTCTGTGTGGTAGTAGTATGC
ATGTAACTGAGAGATCCACCTGCTAGAATTACCTCCAGTGCCGCTGTCGT
ATAGGTATTATTTATACACAGCACAGCATGCAATTGAACTGGTACTCCTG
AGGAAGGAGTAGAGTGTACGTTGAAACTATTCCTTTCTATTTCTTTCAGA
AAGAGACTGTAACAACAGTCAACTGCAGAACACTATATCCCTTGTTATCT
GAGGCTTATCACAGGATCGAGTCAGGAAGAGTGTGATGTGCATTGATTCC
CTTCTGTTCCTCTCTTTCAAGACTCAGTCAGCGCTTGAACTGTTTGTGGA
CTGCTGCTTCTTAGATATTTTCCAGCGAAAGTCAATGTCTTAGGTGCTCA
CTAGAGTCTGCTACATGCCGAAGACAGGCTTACTATCATTGGCACATTTA
GAGCTCCACAGCAGGGGGAATATGGTAGTTCTTCCAGAACACTGTACCAT
CTGCAGGCGGACTGATGTTTGTCAGTGCTATCTTGCAAGACAAACAAGAT
GTCCTCGCCAACTTTATACTGGTGAACCTTTTTGTTTGCTAGATGATACG
GGATACACCTTGACCTTCCGACTGTGACGTTCCCCTCCTGACCCTTCCCC
TTCTTAATACCCCAGCCCAGAGTAAAGTCTTCACTAGATACCATCTAATC
AGTGACAGTGATAGTTATATTACTATTAAGAGTTGAGATATCAGGGGAGG
TTGCGCACGAATGTATCCTGTTGGCTGATCATTTGCATACTGACCGTTTC
ATTGGTCTAAATGTGTCTTCCCAAATCACGTTCCGCCAAGGTCGAACACT
AATTATTTTCTTGACATGTGGCCAGTTCGTCTCCCTGTTCGTCCTTACTA
TTTTTTTTAACGATCCCTAAAGCTGACCCTGATTCTCATGACAACTCTTG
CATGTACATGCACTCTCTTATCTGCGGTCTTTCCCTTCGAAAAGATGGAA
GCACCTGGATACATGGAGAAAGTTCCGCCAGCCGTGCGAGAGGGAAATGA
GAAAAAACTAGCAGAATTCTCAGCTCAACGTGACAGTATCCTTAAGGCGA
TAGAACAATTCCGGAGCTTGAAGATTTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10237:1069..2897+

>mRNA_C-tenellus_contig10237.3.1 ID=mRNA_C-tenellus_contig10237.3.1|Name=mRNA_C-tenellus_contig10237.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=246bp|location=Sequence derived from alignment at C-tenellus_contig10237:1069..2897+ (Choristocarpus tenellus KU2346)
CAGGTACACATTCAGCTCAGAGGACTGGTGGACTTCGACGTGGAGATCAC
CAAGCTGCAGAAGCAGTTGGACACCAAGGTTGAGTCGCAGGTCATCTCCC
TCAAGAAAAAGATGGAAGCACCTGGATACATGGAGAAAGTTCCGCCAGCC
GTGCGAGAGGGAAATGAGAAAAAACTAGCAGAATTCTCAGCTCAACGTGA
CAGTATCCTTAAGGCGATAGAACAATTCCGGAGCTTGAAGATTTGA
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