mRNA_C-tenellus_contig10234.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10234.1.1
Unique NamemRNA_C-tenellus_contig10234.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10234.1.1 vs. uniprot
Match: A0A6H5JN05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN05_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 4.470e-28
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 WENSLNSLQRLCILRCVRADKMPDAILVYVMERLGREFVEPPPFDLAACYVDSSVLTPLIFVLTKGS 201
            WE  LN LQRLC+LRCVRADKMPDAIL YVM  LG++FVEPPPFDL +C+ DS+VLTPLIFVL+KGS
Sbjct: 2725 WEGKLNPLQRLCMLRCVRADKMPDAILSYVMNSLGKDFVEPPPFDLESCFQDSTVLTPLIFVLSKGS 2791
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BLAST of mRNA_C-tenellus_contig10234.1.1 vs. uniprot
Match: D8LF24_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF24_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 6.110e-28
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 WENSLNSLQRLCILRCVRADKMPDAILVYVMERLGREFVEPPPFDLAACYVDSSVLTPLIFVLTKGS 201
            WE  LN LQRLC+LRCVRADKMPDAIL YV+  LG+EFVEPPPFDL +C+ DS+VLTPLIFVL+KGS
Sbjct: 3542 WEGKLNPLQRLCMLRCVRADKMPDAILSYVINSLGKEFVEPPPFDLESCFQDSTVLTPLIFVLSKGS 3608
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BLAST of mRNA_C-tenellus_contig10234.1.1 vs. uniprot
Match: A0A482RXV7_9ARCH (AAA_9 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RXV7_9ARCH)

HSP 1 Score: 104 bits (259), Expect = 1.040e-24
Identity = 44/67 (65.67%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 WENSLNSLQRLCILRCVRADKMPDAILVYVMERLGREFVEPPPFDLAACYVDSSVLTPLIFVLTKGS 201
            W + LNS Q+LC LRC+R DK+PD +L YV+E+LG +FVEPPPFDL +C+ DS+VL+PLIFVL+KGS
Sbjct:  386 WADGLNSFQKLCALRCIRPDKIPDGVLAYVIEQLGTQFVEPPPFDLNSCFKDSNVLSPLIFVLSKGS 452
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BLAST of mRNA_C-tenellus_contig10234.1.1 vs. uniprot
Match: A0A7S3H3N1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3N1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.420e-24
Identity = 44/67 (65.67%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 WENSLNSLQRLCILRCVRADKMPDAILVYVMERLGREFVEPPPFDLAACYVDSSVLTPLIFVLTKGS 201
            W+ SLNS Q+LC+LRC RADK+PD +L YV+E+LG +FVEPPPFDL +C+ DS+ L+PL+FVL+KGS
Sbjct:   17 WDTSLNSFQKLCVLRCWRADKVPDGVLNYVIEQLGTKFVEPPPFDLLSCFKDSNTLSPLVFVLSKGS 83
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BLAST of mRNA_C-tenellus_contig10234.1.1 vs. uniprot
Match: F0YHW5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHW5_AURAN)

HSP 1 Score: 101 bits (252), Expect = 1.760e-23
Identity = 45/67 (67.16%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 WENSLNSLQRLCILRCVRADKMPDAILVYVMERLGREFVEPPPFDLAACYVDSSVLTPLIFVLTKGS 201
            WE +LNS Q+L +LR +RADK+PD ++ YV+E+LG+ F+EPPPF+L ACY DSS LTPLIFVLTKGS
Sbjct: 3519 WEFTLNSFQKLMVLRALRADKIPDGVMNYVIEKLGQRFIEPPPFNLPACYKDSSNLTPLIFVLTKGS 3585
[Close]
BLAST of mRNA_C-tenellus_contig10234.1.1 vs. uniprot
Match: A0A7S4E7T1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7T1_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.270e-23
Identity = 40/67 (59.70%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 WENSLNSLQRLCILRCVRADKMPDAILVYVMERLGREFVEPPPFDLAACYVDSSVLTPLIFVLTKGS 201
            W + LNS Q+LC+LRC+R DK+ D ++ YV+E++G+ F+EPPPF+LA CY DSS LTPL+F+L+KGS
Sbjct: 1866 WNDCLNSFQKLCVLRCLRVDKVTDGVMAYVIEKMGQRFIEPPPFNLANCYKDSSNLTPLVFILSKGS 1932
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BLAST of mRNA_C-tenellus_contig10234.1.1 vs. uniprot
Match: A0A8J2SZZ7_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZZ7_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.280e-23
Identity = 40/67 (59.70%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 WENSLNSLQRLCILRCVRADKMPDAILVYVMERLGREFVEPPPFDLAACYVDSSVLTPLIFVLTKGS 201
            W + LNS Q+LC+LRC+R DK+ D ++ YV+E++G+ F+EPPPF+LA CY DSS LTPL+F+L+KGS
Sbjct: 3494 WNDCLNSFQKLCVLRCLRVDKVTDGVMAYVIEKMGQRFIEPPPFNLANCYKDSSNLTPLVFILSKGS 3560
[Close]
BLAST of mRNA_C-tenellus_contig10234.1.1 vs. uniprot
Match: A0A482UND4_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UND4_9ARCH)

HSP 1 Score: 99.8 bits (247), Expect = 7.990e-23
Identity = 47/67 (70.15%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 WENSLNSLQRLCILRCVRADKMPDAILVYVMERLGREFVEPPPFDLAACYVDSSVLTPLIFVLTKGS 201
            W   LNSLQR+C LRC+R DK+  AI  YV+E LG+ FVEPPPFDLAACY DS+VLTPLIFVL+ GS
Sbjct:    5 WFEGLNSLQRMCFLRCLRPDKLLLAIQDYVIEHLGQSFVEPPPFDLAACYEDSTVLTPLIFVLSAGS 71
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BLAST of mRNA_C-tenellus_contig10234.1.1 vs. uniprot
Match: A0A7S1U4X8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4X8_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.860e-22
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 WENSLNSLQRLCILRCVRADKMPDAILVYVMERLGREFVEPPPFDLAACYVDSSVLTPLIFVLTKGS 201
            WE  LNS Q+LC+LR VR DK+PD ++ YV+E+ G+ +VEPPPF+L  C+ DS+V TPLIF+LTKGS
Sbjct:  559 WEEKLNSFQKLCVLRSVRPDKIPDGVMNYVIEKQGQRYVEPPPFNLPTCFADSTVTTPLIFLLTKGS 625
[Close]
BLAST of mRNA_C-tenellus_contig10234.1.1 vs. uniprot
Match: A0A835YSP2_9STRA (Dynein heavy chain and region D6 of dynein motor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSP2_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.400e-22
Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    4 ENSLNSLQRLCILRCVRADKMPDAILVYVMERLGREFVEPPPFDLAACYVDSSVLTPLIFVLTKGS 201
            E  L++LQRLC+LRCVRADK+P AIL ++M +LG +FVEPPP  L ACY DS+  TPL+FVL+KGS
Sbjct: 2743 EGRLSALQRLCLLRCVRADKVPQAILTFIMTQLGPQFVEPPPLSLPACYADSTATTPLLFVLSKGS 2808
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10234.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JN05_9PHAE4.470e-2877.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF24_ECTSI6.110e-2877.61Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A482RXV7_9ARCH1.040e-2465.67AAA_9 domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S3H3N1_9STRA1.420e-2465.67Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
F0YHW5_AURAN1.760e-2367.16Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S4E7T1_9STRA3.270e-2359.70Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2SZZ7_9STRA3.280e-2359.70Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A482UND4_9ARCH7.990e-2370.15Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S1U4X8_9STRA2.860e-2261.19Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A835YSP2_9STRA5.400e-2265.15Dynein heavy chain and region D6 of dynein motor-d... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10234contigC-tenellus_contig10234:919..1131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LF24
PFAMsAAA_6,AAA_7,AAA_8,AAA_9,DHC_N2,Dynein_heavy,MT
Model size213
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
Exons1
Evalue1e-28
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size213
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789122.3953457-CDS-C-tenellus_contig10234:918..11311680789122.3953457-CDS-C-tenellus_contig10234:918..1131Choristocarpus tenellus KU2346CDSC-tenellus_contig10234 919..1131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10234.1.1prot_C-tenellus_contig10234.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10234 919..1131 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10234.1.1

>prot_C-tenellus_contig10234.1.1 ID=prot_C-tenellus_contig10234.1.1|Name=mRNA_C-tenellus_contig10234.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=71bp
WENSLNSLQRLCILRCVRADKMPDAILVYVMERLGREFVEPPPFDLAACY
VDSSVLTPLIFVLTKGSGER*
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mRNA from alignment at C-tenellus_contig10234:919..1131+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10234.1.1 ID=mRNA_C-tenellus_contig10234.1.1|Name=mRNA_C-tenellus_contig10234.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=213bp|location=Sequence derived from alignment at C-tenellus_contig10234:919..1131+ (Choristocarpus tenellus KU2346)
TGGGAAAATTCTTTGAACTCTCTACAACGTCTGTGCATCCTGCGGTGTGT
AAGAGCAGACAAAATGCCTGACGCTATCCTGGTGTACGTCATGGAGAGGT
TGGGGAGGGAATTTGTTGAACCTCCCCCATTCGATCTTGCAGCCTGCTAT
GTGGACTCCAGTGTACTCACACCACTCATATTCGTGCTCACCAAGGGGTC
CGGTGAGCGGTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig10234:919..1131+

>mRNA_C-tenellus_contig10234.1.1 ID=mRNA_C-tenellus_contig10234.1.1|Name=mRNA_C-tenellus_contig10234.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=213bp|location=Sequence derived from alignment at C-tenellus_contig10234:919..1131+ (Choristocarpus tenellus KU2346)
TGGGAAAATTCTTTGAACTCTCTACAACGTCTGTGCATCCTGCGGTGTGT
AAGAGCAGACAAAATGCCTGACGCTATCCTGGTGTACGTCATGGAGAGGT
TGGGGAGGGAATTTGTTGAACCTCCCCCATTCGATCTTGCAGCCTGCTAT
GTGGACTCCAGTGTACTCACACCACTCATATTCGTGCTCACCAAGGGGTC
CGGTGAGCGGTAA
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