mRNA_C-tenellus_contig10227.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10227.2.1
Unique NamemRNA_C-tenellus_contig10227.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10227.2.1 vs. uniprot
Match: D7FKL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL5_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 5.060e-21
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:    7 PIVQALVQLQNEGTNWKKYLPDSAQAEGARLYILA--RQGGENTQPLLGASLSMDKVKLPALLQLFPANALGNAKWPADFDNKADYTLDVR 273
            P+V+ALVQL +E  +W K LPD  QA GA + I A   +GG+   P LGAS++MD++K P ++QLFP NA+G A WP DF+ +  Y+++VR
Sbjct:   48 PVVEALVQLADEEVDWTKLLPDPGQAPGASMIITASKERGGK---PSLGASVAMDRLKFPVMMQLFPRNAVGGASWPGDFEEQGTYSVEVR 135
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BLAST of mRNA_C-tenellus_contig10227.2.1 vs. uniprot
Match: A0A6H5KIW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIW6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.150e-20
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:    7 PIVQALVQLQNEGTNWKKYLPDSAQAEGARLYILA--RQGGENTQPLLGASLSMDKVKLPALLQLFPANALGNAKWPADFDNKADYTLDVR 273
            P+V+ALVQL +E  +W K LPD  QA GA + I A   +GG+   P LGAS++MD++K P ++QLFP NA+G A WP DF+ +  Y+++VR
Sbjct:  107 PVVEALVQLADEEVDWTKLLPDPGQAPGASMIITASKERGGK---PSLGASVAMDRLKFPVMMQLFPRNAVGGASWPGDFEEQGTYSVEVR 194
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10227.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKL5_ECTSI5.060e-2149.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIW6_9PHAE2.150e-2049.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10227contigC-tenellus_contig10227:4423..5616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size601
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_000660.1
Cds size156
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789121.9861922-UTR-C-tenellus_contig10227:4422..44811680789121.9861922-UTR-C-tenellus_contig10227:4422..4481Choristocarpus tenellus KU2346UTRC-tenellus_contig10227 4423..4481 +
1680789121.9958124-UTR-C-tenellus_contig10227:4739..48391680789121.9958124-UTR-C-tenellus_contig10227:4739..4839Choristocarpus tenellus KU2346UTRC-tenellus_contig10227 4740..4839 +
1680789122.0337007-UTR-C-tenellus_contig10227:5330..56161680789122.0337007-UTR-C-tenellus_contig10227:5330..5616Choristocarpus tenellus KU2346UTRC-tenellus_contig10227 5331..5616 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789122.0072036-CDS-C-tenellus_contig10227:4839..48721680789122.0072036-CDS-C-tenellus_contig10227:4839..4872Choristocarpus tenellus KU2346CDSC-tenellus_contig10227 4840..4872 +
1680789122.0241253-CDS-C-tenellus_contig10227:5207..53301680789122.0241253-CDS-C-tenellus_contig10227:5207..5330Choristocarpus tenellus KU2346CDSC-tenellus_contig10227 5208..5330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10227.2.1prot_C-tenellus_contig10227.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10227 4840..5330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10227.2.1

>prot_C-tenellus_contig10227.2.1 ID=prot_C-tenellus_contig10227.2.1|Name=mRNA_C-tenellus_contig10227.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=52bp
MDKVKLPALLQLFPANALGNAKWPADFDNKADYTLDVRLQNVIRYIMCVL
T*
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mRNA from alignment at C-tenellus_contig10227:4423..5616+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10227.2.1 ID=mRNA_C-tenellus_contig10227.2.1|Name=mRNA_C-tenellus_contig10227.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1194bp|location=Sequence derived from alignment at C-tenellus_contig10227:4423..5616+ (Choristocarpus tenellus KU2346)
AAGAAACCGATCGTTCAGGCGCTGGTCCAGCTGCAAAACGAGGGCACCAA
CTGGAAAAAGTGAGAAGGTGCAGTGCCAGCGTCCCCATAAGGTTCATGCC
ATGCGCATTTTCCCTTGTTTTTCTACCATCTCCACTATCTATGACAATGT
GTGACAGGGCGATTGCGAGGTCAGATCTCGTGGGAAAGATCAAACCTCCT
CCTCTCCAGCGTAAACTCCCCCATCGCTTCGATAGACGAACCTCTTGTCT
CGACGCCCCCATCAGCTGAATGTTGCGAACCCTGGAAGCCCTGAATGTTC
TTACCTACTTTGCATAGGTATCTGCCCGACTCAGCTCAGGCGGAAGGGGC
CCGCCTCTACATATTGGCGAGGCAGGGGGGAGAAAATACACAGCCACTGC
TTGGAGCCAGCTTGTCAATGGACAAGGTGAAACTGCCAGCACTCTTACAG
GTAAGCTCACCCTACAAGCCAGCGTTTGCCATTCCCGAGCTATACCGAGA
CAAGTACGAATTTGTGCATTGGAACCTGAACCTACTACCTGATGGTGCCG
TCGCTACAATAGAATGGCAGCTCAAGGAGGCAGTAAGTCCCGCCTGAAAA
TCGATATGCCAGTAAAGATGTCATCTAGGCTACTGTGTGCCCGATGAGAT
GTCTTACTACCTTGAAATACCCTTCACTGAAGTTTTGTCATCGTGCACAA
AGAAAACTACTCGAAGTACAATCTCAAGATCGTACCTCAACTTCAACGCT
CTACATCCGCTACCAAAATGAACGTGGGCCTACAGCTATTTCCAGCGAAT
GCTCTGGGAAATGCGAAATGGCCTGCAGATTTTGACAACAAAGCTGACTA
CACCTTGGATGTGAGACTACAAAATGTAATTCGTTACATAATGTGTGTTC
TGACCTGAAACCTCTCTTTGACGATAATGCTGCATTGCAGGTGGTAGTGC
GGGATGGATAAAATGGTCGTTTATGGAGTTTGAGCTTGCTGCATACCCTT
GAGAGTTTAAGTTTGACTGTGGGTGTCAAATAAAAATATGTGTGTGTGTG
TGCATGTTTTCTTCTTCTGAGATTAGCGTGAGCTACCTTCGGACACACAC
AAATTATATTTGTTATTTGATTATCACCCGATACATTGTAGTGCTTCCAA
CTATCAATTGACAATCAGTTACTCTTCCCACTGCTGTACCCAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10227:4423..5616+

>mRNA_C-tenellus_contig10227.2.1 ID=mRNA_C-tenellus_contig10227.2.1|Name=mRNA_C-tenellus_contig10227.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=156bp|location=Sequence derived from alignment at C-tenellus_contig10227:4423..5616+ (Choristocarpus tenellus KU2346)
ATGGACAAGGTGAAACTGCCAGCACTCTTACAGCTATTTCCAGCGAATGC
TCTGGGAAATGCGAAATGGCCTGCAGATTTTGACAACAAAGCTGACTACA
CCTTGGATGTGAGACTACAAAATGTAATTCGTTACATAATGTGTGTTCTG
ACCTGA
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