mRNA_C-tenellus_contig10220.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig10220.1.1 vs. uniprot
Match: A0A6H5K010_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K010_9PHAE) HSP 1 Score: 189 bits (479), Expect = 1.470e-57 Identity = 94/187 (50.27%), Postives = 126/187 (67.38%), Query Frame = 1 Query: 1 FVSKQIHYLGHDVSPQGIAVSQARVEAILEMHPPQTVKGLQSFLGSMNFVRKYIPHLATATEPLFELIR-----HTQKAKWNRPQQTAFGEYQRLLSTAPVLYFPDFSKEFFVHVDASNVGTGAYFEP-------IIAYHSALLSPSQRKYSATQKECLAVILAIQHWRPYVWGKYFTVITDHSALR 525 F K++ YLGH S GI + R++AIL++ P+T+K ++S LG++N+V+++IP LAT T PL L + H K +W AF E ++LL+ APVL+FPDF+KEF VHVDAS G GA+ IIAY S + SQ+ YSAT KEC AV+LAIQHWRPY+WGK+FT +TDH+ALR Sbjct: 34 FGPKEVKYLGHVQSSDGIRLGDDRIKAILDLPTPKTIKEIRSVLGTVNYVKRFIPDLATITAPLVNLTKKDAAKHVAK-RWGPEHDKAFAEVKQLLTKAPVLHFPDFTKEFVVHVDASEAGAGAFLAQQNGDDLNIIAYFSQRFNKSQQHYSATMKECYAVVLAIQHWRPYLWGKHFTCVTDHAALR 219
BLAST of mRNA_C-tenellus_contig10220.1.1 vs. uniprot
Match: A0A6H5L2D4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D4_9PHAE) HSP 1 Score: 185 bits (469), Expect = 5.140e-55 Identity = 89/186 (47.85%), Postives = 123/186 (66.13%), Query Frame = 1 Query: 1 FVSKQIHYLGHDVSPQGIAVSQARVEAILEMHPPQTVKGLQSFLGSMNFVRKYIPHLATATEPLFELIRH----TQKAKWNRPQQTAFGEYQRLLSTAPVLYFPDFSKEFFVHVDASNVGTGAYFEP-------IIAYHSALLSPSQRKYSATQKECLAVILAIQHWRPYVWGKYFTVITDHSALR 525 F K++ YLGH S GI + R+++ILE+ P +K L+S LG++N+VRK+IP LA T P+ EL + + +W AF E +RLL+ APVL+F DFSKEF +HVDAS VG GA+ I++Y S + SQ+ YSAT KEC A++L+IQHWRP++WGK+FT +TDH+ALR Sbjct: 93 FGPKEVKYLGHIFSADGIRFGEDRIKSILELPTPTNIKSLRSVLGTINYVRKFIPDLAAVTAPMVELTKKDAVKSVAKRWGPKHDEAFAEVKRLLTNAPVLHFTDFSKEFVIHVDASEVGAGAFLAQKNGDDVNIVSYFSQRFNKSQQHYSATMKECYAIVLSIQHWRPHLWGKHFTCVTDHAALR 278
BLAST of mRNA_C-tenellus_contig10220.1.1 vs. uniprot
Match: A0A6H5KUM8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM8_9PHAE) HSP 1 Score: 192 bits (489), Expect = 9.210e-55 Identity = 95/187 (50.80%), Postives = 128/187 (68.45%), Query Frame = 1 Query: 1 FVSKQIHYLGHDVSPQGIAVSQARVEAILEMHPPQTVKGLQSFLGSMNFVRKYIPHLATATEPLFEL-----IRHTQKAKWNRPQQTAFGEYQRLLSTAPVLYFPDFSKEFFVHVDASNVGTGAYFEP-------IIAYHSALLSPSQRKYSATQKECLAVILAIQHWRPYVWGKYFTVITDHSALR 525 F K++ YLGH +S GI + R++AIL++ P+T+K L+S LG++N+V+++IP LAT T PL +L ++H + +W AF E + LL+ APVL+FPDFSKEF VHVDAS G GA+ IIAY S + SQ+ YSAT KEC AV+LAIQHWRPY+WGK+FT +TDH+ALR Sbjct: 39 FGPKEVKYLGHVLSSDGIRLGDDRIKAILDLPTPKTIKELRSVLGTVNYVKRFIPDLATITAPLVDLTKKDAVKHVAR-RWGPEHDQAFAEVKNLLTKAPVLHFPDFSKEFVVHVDASEAGAGAFLAQQNGDDLNIIAYFSQRFNKSQQHYSATMKECYAVVLAIQHWRPYLWGKHFTCVTDHAALR 224
BLAST of mRNA_C-tenellus_contig10220.1.1 vs. uniprot
Match: A0A6H5KRQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ8_9PHAE) HSP 1 Score: 190 bits (482), Expect = 4.470e-54 Identity = 93/186 (50.00%), Postives = 127/186 (68.28%), Query Frame = 1 Query: 1 FVSKQIHYLGHDVSPQGIAVSQARVEAILEMHPPQTVKGLQSFLGSMNFVRKYIPHLATATEPLFELIR--HTQKA--KWNRPQQTAFGEYQRLLSTAPVLYFPDFSKEFFVHVDASNVGTGAYFEP-------IIAYHSALLSPSQRKYSATQKECLAVILAIQHWRPYVWGKYFTVITDHSALR 525 F +++ YLGH +S +GI + + R++AI+++ P+T+K L+S LG +NFVRKYIP L+T PL EL + H + +WN+ AF E +RLLS APVL FPDF++ F VHVDAS VG GA+ IIAY S + +QR YS T KEC V+L++QHWRPY+WGK+F V+TDH+ALR Sbjct: 95 FGPREVKYLGHILSEKGIRIGEDRIKAIIDLPTPKTIKELRSALGMVNFVRKYIPDLSTVIAPLVELTQKEHVKSIAKRWNQEHDKAFAEVKRLLSEAPVLCFPDFTRSFVVHVDASEVGAGAFLAQKNGDDLNIIAYFSQRFNKAQRHYSPTMKECYGVVLSLQHWRPYLWGKHFEVVTDHAALR 280
BLAST of mRNA_C-tenellus_contig10220.1.1 vs. uniprot
Match: A0A6H5KHS5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS5_9PHAE) HSP 1 Score: 183 bits (464), Expect = 1.380e-53 Identity = 90/185 (48.65%), Postives = 122/185 (65.95%), Query Frame = 1 Query: 1 FVSKQIHYLGHDVSPQGIAVSQARVEAILEMHPPQTVKGLQSFLGSMNFVRKYIPHLATATEPLFELIR----HTQKAKWNRPQQTAFGEYQRLLSTAPVLYFPDFSKEFFVHVDASNVGTGAYFEP-------IIAYHSALLSPSQRKYSATQKECLAVILAIQHWRPYVWGKYFTVITDHSAL 522 F +++ YLGH +S GI + + R+++IL++ P +K L+S LG +N+VRK+IP+LA T PL EL + + +W AF E + L + APVL+FPDFSKEF +HVDAS G GA+ IIAY S + SQR YSAT KEC AV+LAIQHWRPY+WG++FT +TDH+AL Sbjct: 172 FGPREVKYLGHILSADGIRLGEDRIKSILDLPTPTNIKELRSVLGMVNYVRKFIPNLAAITAPLVELTKKEAVQSVAKRWGPEHDKAFAEIKSLHTKAPVLHFPDFSKEFAIHVDASETGAGAFLAQKNGDDLNIIAYFSQRFNKSQRHYSATMKECYAVVLAIQHWRPYLWGRHFTCVTDHAAL 356
BLAST of mRNA_C-tenellus_contig10220.1.1 vs. uniprot
Match: A0A6H5K1J3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J3_9PHAE) HSP 1 Score: 186 bits (473), Expect = 1.750e-53 Identity = 92/186 (49.46%), Postives = 123/186 (66.13%), Query Frame = 1 Query: 1 FVSKQIHYLGHDVSPQGIAVSQARVEAILEMHPPQTVKGLQSFLGSMNFVRKYIPHLATATEPLFELIRH----TQKAKWNRPQQTAFGEYQRLLSTAPVLYFPDFSKEFFVHVDASNVGTGAYFEP-------IIAYHSALLSPSQRKYSATQKECLAVILAIQHWRPYVWGKYFTVITDHSALR 525 F +++ YLGH +S GI + + R+++IL++ P +K L+S LG +N+VRK+IP+LA T PL EL + + +W AF E + LL+ APVL+FPDFSKEF +HVDAS G GA+ IIAY S + SQR YSAT KEC AV+LAIQHWRPY+WG+ FT +TDH+ALR Sbjct: 172 FGPREVKYLGHILSADGIRLGEDRIKSILDLPTPTNIKELRSVLGMVNYVRKFIPNLAAITAPLVELTKKEAVKSVAKRWGPEHDKAFAEIRSLLTKAPVLHFPDFSKEFVIHVDASETGAGAFLAQKNGDDLNIIAYFSQRFNKSQRHYSATMKECYAVVLAIQHWRPYLWGRNFTCVTDHAALR 357
BLAST of mRNA_C-tenellus_contig10220.1.1 vs. uniprot
Match: A0A6H5KJC7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC7_9PHAE) HSP 1 Score: 186 bits (472), Expect = 2.020e-53 Identity = 91/186 (48.92%), Postives = 121/186 (65.05%), Query Frame = 1 Query: 1 FVSKQIHYLGHDVSPQGIAVSQARVEAILEMHPPQTVKGLQSFLGSMNFVRKYIPHLATATEPLFELIRHTQKAK----WNRPQQTAFGEYQRLLSTAPVLYFPDFSKEFFVHVDASNVGTGAYFEP-------IIAYHSALLSPSQRKYSATQKECLAVILAIQHWRPYVWGKYFTVITDHSALR 525 F K++ YLGH +S GI + R++AIL++ P +K L+S LG +N+VRK+IP LAT P+ +L + W AF + ++LL+ APVL+FPDFSKEF +HVDAS G GA+ IIAY S + SQR YSAT KEC AV+LAIQHWRPY+WG++FT +TDH+ALR Sbjct: 124 FGPKEVKYLGHILSSDGIRLGDDRIQAILDLPTPTNIKELRSVLGMVNYVRKFIPDLATTIAPMVDLTKKESLKSIAKLWGPEHDAAFAKVKKLLTEAPVLHFPDFSKEFVIHVDASETGAGAFLAQRNGDDLNIIAYFSQRFNKSQRHYSATMKECYAVVLAIQHWRPYLWGRHFTCVTDHAALR 309
BLAST of mRNA_C-tenellus_contig10220.1.1 vs. uniprot
Match: A0A6H5JQW2_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW2_9PHAE) HSP 1 Score: 176 bits (447), Expect = 7.150e-52 Identity = 90/187 (48.13%), Postives = 123/187 (65.78%), Query Frame = 1 Query: 1 FVSKQIHYLGHDVSPQGIAVSQARVEAILEMHPPQTVKGLQSFLGSMNFVRKYIPHLATATEPLFELI-RHTQKA---KWNRPQQTAFGEYQRLLSTAPVLYFPDFSKEFFVHVDASNVGTGAYFEP-------IIAYHSALLSPSQ-RKYSATQKECLAVILAIQHWRPYVWGKYFTVITDHSALR 525 F +++ +LGH S GI + + R++AIL++ P +K L+S LG++N+VRK+IP+LAT T PL + + K+ +W A+ E +LL+ APVL FPDFSKEF +HVDASNVGT A+ IIAY + SQ YSAT KEC V+LAIQHWRPY+WG++FT +TDH+ALR Sbjct: 56 FGPQEVKFLGHIFSSDGIRLGEDRIKAILDIPTPTNIKELRSVLGTVNYVRKFIPNLATITAPLVDFTEKEAMKSVAKRWGPEHNKAYAEANKLLTAAPVLNFPDFSKEFVIHVDASNVGTRAFLAQQDGDDLKIIAYFGQRFNKSQLHYYSATMKECYGVVLAIQHWRPYLWGRHFTCVTDHAALR 242
BLAST of mRNA_C-tenellus_contig10220.1.1 vs. uniprot
Match: A0A6H5JU37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU37_9PHAE) HSP 1 Score: 186 bits (472), Expect = 1.720e-51 Identity = 91/186 (48.92%), Postives = 121/186 (65.05%), Query Frame = 1 Query: 1 FVSKQIHYLGHDVSPQGIAVSQARVEAILEMHPPQTVKGLQSFLGSMNFVRKYIPHLATATEPLFELIRHTQKAK----WNRPQQTAFGEYQRLLSTAPVLYFPDFSKEFFVHVDASNVGTGAYFEP-------IIAYHSALLSPSQRKYSATQKECLAVILAIQHWRPYVWGKYFTVITDHSALR 525 F K++ YLGH +S GI + R++AIL++ P +K L+S LG +N+VRK+IP LAT P+ +L + W AF + ++LL+ APVL+FPDFSKEF +HVDAS G GA+ IIAY S + SQR YSAT KEC AV+LAIQHWRPY+WG++FT +TDH+ALR Sbjct: 124 FGPKEVKYLGHILSSDGIRLGDDRIQAILDLPTPTNIKELRSVLGMVNYVRKFIPDLATTIAPMVDLTKKESLKSIAKLWGPEHDAAFAKVKKLLTEAPVLHFPDFSKEFVIHVDASETGAGAFLAQRNGDDLNIIAYFSQRFNKSQRHYSATMKECYAVVLAIQHWRPYLWGRHFTCVTDHAALR 309
BLAST of mRNA_C-tenellus_contig10220.1.1 vs. uniprot
Match: A0A6H5KKE6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKE6_9PHAE) HSP 1 Score: 183 bits (465), Expect = 4.850e-51 Identity = 88/186 (47.31%), Postives = 127/186 (68.28%), Query Frame = 1 Query: 1 FVSKQIHYLGHDVSPQGIAVSQARVEAILEMHPPQTVKGLQSFLGSMNFVRKYIPHLATATEPLFELIR--HTQKA--KWNRPQQTAFGEYQRLLSTAPVLYFPDFSKEFFVHVDASNVGTGAYFEP-------IIAYHSALLSPSQRKYSATQKECLAVILAIQHWRPYVWGKYFTVITDHSALR 525 F +++ YLGH +S +GI + + R+++I+++ P+T+K L+S LG +N+VRK+IP L+T PL L + H + +WN+ AF + + LLS APVL FPDF+K+F VHVDAS VG GA+ IIAY S + +QR YSAT KEC V+L++QHWRPY+WG++F V+TDH+ALR Sbjct: 359 FGPQEVKYLGHILSAKGIRIGEDRIQSIIDLPVPKTIKALRSVLGMVNYVRKFIPDLSTVIAPLVGLTQKEHVKSIAKRWNQEHDKAFADIKHLLSKAPVLCFPDFTKDFVVHVDASEVGAGAFLGQKNGDDVNIIAYFSQRFNKAQRHYSATMKECYGVVLSLQHWRPYLWGRHFEVVTDHAALR 544 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10220.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10220.1.1 >prot_C-tenellus_contig10220.1.1 ID=prot_C-tenellus_contig10220.1.1|Name=mRNA_C-tenellus_contig10220.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=179bp FVSKQIHYLGHDVSPQGIAVSQARVEAILEMHPPQTVKGLQSFLGSMNFVback to top mRNA from alignment at C-tenellus_contig10220:2279..3083+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10220.1.1 ID=mRNA_C-tenellus_contig10220.1.1|Name=mRNA_C-tenellus_contig10220.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=805bp|location=Sequence derived from alignment at C-tenellus_contig10220:2279..3083+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10220:2279..3083+ >mRNA_C-tenellus_contig10220.1.1 ID=mRNA_C-tenellus_contig10220.1.1|Name=mRNA_C-tenellus_contig10220.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=537bp|location=Sequence derived from alignment at C-tenellus_contig10220:2279..3083+ (Choristocarpus tenellus KU2346)back to top |