mRNA_C-tenellus_contig1022.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1022.1.1
Unique NamemRNA_C-tenellus_contig1022.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1022.1.1 vs. uniprot
Match: UPI00073A5137 (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Solanum tuberosum TaxID=4113 RepID=UPI00073A5137)

HSP 1 Score: 84.0 bits (206), Expect = 3.420e-19
Identity = 36/84 (42.86%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    1 VKTRFIVKIKWTANGDIERFKTRMAARGFSKQEGVDYFSTFSPVVGIDVIRVALATAANKLWVINTLNFTQAYLNALLPEDVWL 252
            +K  +I K+ + ANGD+ERFK R+ A+G+S++EG+DY  TFSPVV I  +R  LA  A + W I+ ++   A+L   LP+++++
Sbjct:   27 IKALWIFKVNYKANGDVERFKARLVAKGYSQKEGIDYQETFSPVVKIKTVRTVLAITAQQHWQIHQMDVFNAFLQGDLPDEIYM 110
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BLAST of mRNA_C-tenellus_contig1022.1.1 vs. uniprot
Match: A0A392RMR2_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392RMR2_9FABA)

HSP 1 Score: 82.4 bits (202), Expect = 2.210e-18
Identity = 37/81 (45.68%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:   10 RFIVKIKWTANGDIERFKTRMAARGFSKQEGVDYFSTFSPVVGIDVIRVALATAANKLWVINTLNFTQAYLNALLPEDVWL 252
            R++ K+K+ ANG IER+K R+ A+G+++QEGVDYF TFSPV  +  +R+ LA  A   W +  L+   A+L+  L EDV++
Sbjct:   35 RWVYKVKYHANGSIERYKARLVAKGYTQQEGVDYFDTFSPVAKLTSVRLLLALVAANNWHLQQLDVNDAFLHGNLDEDVYM 115
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BLAST of mRNA_C-tenellus_contig1022.1.1 vs. uniprot
Match: A0A251TQK1_HELAN (Putative reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TQK1_HELAN)

HSP 1 Score: 82.4 bits (202), Expect = 2.720e-18
Identity = 35/82 (42.68%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:    1 VKTRFIVKIKWTANGDIERFKTRMAARGFSKQEGVDYFSTFSPVVGIDVIRVALATAANKLWVINTLNFTQAYLNALLPEDV 246
            + ++++ K+K+  NG++ER+K R+ A GF++QEGVDY  TF+PV  +  +R  LA A  K W+I+ L+   A+L+  L EDV
Sbjct:   35 IDSKWVYKVKYKPNGEVERYKARLVANGFTQQEGVDYHDTFAPVAKLVTVRTLLAVATKKNWIISQLDLNNAFLHGDLNEDV 116
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BLAST of mRNA_C-tenellus_contig1022.1.1 vs. uniprot
Match: A0A251TED9_HELAN (Putative reverse transcriptase, RNA-dependent DNA polymerase, Gag-polypeptide of LTR copia-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TED9_HELAN)

HSP 1 Score: 85.1 bits (209), Expect = 1.940e-17
Identity = 38/84 (45.24%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    1 VKTRFIVKIKWTANGDIERFKTRMAARGFSKQEGVDYFSTFSPVVGIDVIRVALATAANKLWVINTLNFTQAYLNALLPEDVWL 252
            V ++++ KIK+  NG++ERFK R+ A+GF++ EGVDY  TF+PV  +  +R  LA A  K WVIN L+   A+L+  L E+V++
Sbjct:  505 VDSKWVYKIKYKPNGEVERFKARLVAKGFTQMEGVDYHDTFAPVAKLVTVRTLLAVAVKKRWVINQLDVNNAFLHGDLNEEVYM 588
[Close]
BLAST of mRNA_C-tenellus_contig1022.1.1 vs. uniprot
Match: A0A2K3JS97_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JS97_TRIPR)

HSP 1 Score: 81.6 bits (200), Expect = 3.370e-17
Identity = 37/81 (45.68%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:   10 RFIVKIKWTANGDIERFKTRMAARGFSKQEGVDYFSTFSPVVGIDVIRVALATAANKLWVINTLNFTQAYLNALLPEDVWL 252
            +++ K+K+ ANG IER+K R+ A+G+++ EGVDYF TFSPV  +  +RV L+ AA K W +  L+   A+L+  L EDV++
Sbjct:  108 KWVYKVKYHANGSIERYKARLVAQGYTQMEGVDYFDTFSPVAKLTTVRVLLSLAAIKGWHLEQLDVNNAFLHGDLHEDVYM 188
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BLAST of mRNA_C-tenellus_contig1022.1.1 vs. uniprot
Match: A0A5K1DP16_9MAGN (Uncharacterized protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1DP16_9MAGN)

HSP 1 Score: 84.3 bits (207), Expect = 3.650e-17
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:    1 VKTRFIVKIKWTANGDIERFKTRMAARGFSKQEGVDYFSTFSPVVGIDVIRVALATAANKLWVINTLNFTQAYLNALLPEDVWL 252
            + T++I KIK TA+G I R+K R+ ARGF ++ G+DY  TFSP V    IRV L  A    W +  LNF  A+LN +L EDV++
Sbjct: 1005 IDTKWIYKIKRTADGSISRYKARLVARGFLQEAGIDYLETFSPTVKPTTIRVILTIAVQHAWSLRQLNFDNAFLNGVLNEDVYI 1088
[Close]
BLAST of mRNA_C-tenellus_contig1022.1.1 vs. uniprot
Match: A0A392PAD6_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392PAD6_9FABA)

HSP 1 Score: 82.0 bits (201), Expect = 4.680e-17
Identity = 39/84 (46.43%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    1 VKTRFIVKIKWTANGDIERFKTRMAARGFSKQEGVDYFSTFSPVVGIDVIRVALATAANKLWVINTLNFTQAYLNALLPEDVWL 252
            V  +++ KIK+ ANG IER+K R+ A+G+++ EGVDYF TFSPV  +  +RV LA AA K W +  L+   A+L+  L E+V++
Sbjct:  163 VGCKWVYKIKYHANGTIERYKARLVAKGYTQMEGVDYFDTFSPVAKMTTVRVLLAVAAIKGWHLEQLDVNNAFLHGDLNEEVYM 246
[Close]
BLAST of mRNA_C-tenellus_contig1022.1.1 vs. uniprot
Match: UPI00092EB060 (uncharacterized protein LOC109352928 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092EB060)

HSP 1 Score: 84.0 bits (206), Expect = 4.930e-17
Identity = 38/81 (46.91%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:   10 RFIVKIKWTANGDIERFKTRMAARGFSKQEGVDYFSTFSPVVGIDVIRVALATAANKLWVINTLNFTQAYLNALLPEDVWL 252
            +++ KIK+ ANG +ER+K R+ A+G+++ EGVDYF TFSPVV I  +RV LA AA   W +  L+   A+L+  L E+V++
Sbjct:  763 KWVYKIKYNANGTLERYKARLVAKGYTQLEGVDYFETFSPVVKITTVRVVLALAAANSWFLEQLDINNAFLHGDLHEEVYM 843
[Close]
BLAST of mRNA_C-tenellus_contig1022.1.1 vs. uniprot
Match: UPI001F5FB83D (uncharacterized protein LOC124823102 n=1 Tax=Vigna umbellata TaxID=87088 RepID=UPI001F5FB83D)

HSP 1 Score: 84.0 bits (206), Expect = 4.960e-17
Identity = 37/81 (45.68%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:   10 RFIVKIKWTANGDIERFKTRMAARGFSKQEGVDYFSTFSPVVGIDVIRVALATAANKLWVINTLNFTQAYLNALLPEDVWL 252
            +++ KIK  A+G IER+K R+ A+G+++Q+G+DYF TFSPVV +  +R+ LA AA+K W ++ L+ T A+L+  L E+V++
Sbjct:  621 KWVYKIKRHADGSIERYKARLVAKGYTQQQGLDYFETFSPVVKLTTVRLVLALAASKHWYLHQLDVTNAFLHGDLDEEVYM 701
[Close]
BLAST of mRNA_C-tenellus_contig1022.1.1 vs. uniprot
Match: A0A6L2MC34_TANCI (Ribonuclease H-like domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2MC34_TANCI)

HSP 1 Score: 84.0 bits (206), Expect = 5.030e-17
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:   10 RFIVKIKWTANGDIERFKTRMAARGFSKQEGVDYFSTFSPVVGIDVIRVALATAANKLWVINTLNFTQAYLNALLPEDVWL 252
            ++I K+K+ ANGD+ERFKTR+ A+GFS++EG+DY  TFSPV+ I  IR  L+   N  W +  L+   A+L   L EDV++
Sbjct: 1466 KWIYKVKYKANGDVERFKTRLVAKGFSQREGIDYEETFSPVLKIVAIRCILSIVVNNKWPLFQLDINNAFLYGELEEDVYM 1546
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1022.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00073A51373.420e-1942.86uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A392RMR2_9FABA2.210e-1845.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A251TQK1_HELAN2.720e-1842.68Putative reverse transcriptase, RNA-dependent DNA ... [more]
A0A251TED9_HELAN1.940e-1745.24Putative reverse transcriptase, RNA-dependent DNA ... [more]
A0A2K3JS97_TRIPR3.370e-1745.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A5K1DP16_9MAGN3.650e-1747.62Uncharacterized protein (Fragment) n=1 Tax=Nymphae... [more]
A0A392PAD6_9FABA4.680e-1746.43Retrovirus-related Pol polyprotein from transposon... [more]
UPI00092EB0604.930e-1746.91uncharacterized protein LOC109352928 n=1 Tax=Lupin... [more]
UPI001F5FB83D4.960e-1745.68uncharacterized protein LOC124823102 n=1 Tax=Vigna... [more]
A0A6L2MC34_TANCI5.030e-1748.15Ribonuclease H-like domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1022contigC-tenellus_contig1022:631..882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3711.Bra008452.1-P
PFAMsRVT_2,Retrotran_gag_3,Retrotrans_gag,gag_pre-integrs,rve
Model size252
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.44e-16
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GHHH@35493|Streptophyta
DescriptionMitochondrial protein
Cds size252
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789121.529048-CDS-C-tenellus_contig1022:630..8821680789121.529048-CDS-C-tenellus_contig1022:630..882Choristocarpus tenellus KU2346CDSC-tenellus_contig1022 631..882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1022.1.1prot_C-tenellus_contig1022.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1022 631..882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1022.1.1

>prot_C-tenellus_contig1022.1.1 ID=prot_C-tenellus_contig1022.1.1|Name=mRNA_C-tenellus_contig1022.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=84bp
VKTRFIVKIKWTANGDIERFKTRMAARGFSKQEGVDYFSTFSPVVGIDVI
RVALATAANKLWVINTLNFTQAYLNALLPEDVWL
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mRNA from alignment at C-tenellus_contig1022:631..882+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1022.1.1 ID=mRNA_C-tenellus_contig1022.1.1|Name=mRNA_C-tenellus_contig1022.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=252bp|location=Sequence derived from alignment at C-tenellus_contig1022:631..882+ (Choristocarpus tenellus KU2346)
GTCAAGACCAGGTTTATAGTCAAGATCAAATGGACAGCCAATGGAGACAT
TGAAAGGTTCAAGACCAGGATGGCGGCACGGGGTTTTTCTAAGCAAGAAG
GGGTGGACTACTTTAGCACATTCAGTCCAGTGGTGGGAATTGATGTGATT
CGGGTAGCCCTAGCCACAGCAGCCAACAAACTCTGGGTCATCAACACCCT
AAACTTTACTCAAGCCTACCTGAACGCACTACTTCCTGAGGATGTATGGC
TA
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Coding sequence (CDS) from alignment at C-tenellus_contig1022:631..882+

>mRNA_C-tenellus_contig1022.1.1 ID=mRNA_C-tenellus_contig1022.1.1|Name=mRNA_C-tenellus_contig1022.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=252bp|location=Sequence derived from alignment at C-tenellus_contig1022:631..882+ (Choristocarpus tenellus KU2346)
GTCAAGACCAGGTTTATAGTCAAGATCAAATGGACAGCCAATGGAGACAT
TGAAAGGTTCAAGACCAGGATGGCGGCACGGGGTTTTTCTAAGCAAGAAG
GGGTGGACTACTTTAGCACATTCAGTCCAGTGGTGGGAATTGATGTGATT
CGGGTAGCCCTAGCCACAGCAGCCAACAAACTCTGGGTCATCAACACCCT
AAACTTTACTCAAGCCTACCTGAACGCACTACTTCCTGAGGATGTATGGC
TA
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