mRNA_C-tenellus_contig10213.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10213.1.2
Unique NamemRNA_C-tenellus_contig10213.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10213.1.2 vs. uniprot
Match: D7FQR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR1_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 6.860e-76
Identity = 125/161 (77.64%), Postives = 142/161 (88.20%), Query Frame = 3 
Query:  258 LVLNRSETMEGYLRCMLVADLAIEAQLKAEQDHESRNVIAIEGTKFSIHKRTKINHFTEIFELGKEKVTQSRSGTKRCTVCLRDKGRMDSLVVTTSMPTAQGQLHLVETRQLLDKGHMLAQELHVSNLTTGGKCVTKRTWVRVPVTPLDQESVLEEMSVQP 740
            L ++RSETMEGYLRCM VADLAIEAQ+KAEQDHESRNV AIEGTK  IHKRTKINHFT+I+EL KEK+T  RSG K C V L + G +D LV+TTSMPTAQGQ+HLVETRQLLDKGH+ AQELH+SNLTTG +CVTKRTWVRV VTP+DQESVL+EM++QP
Sbjct:   30 LEVSRSETMEGYLRCMNVADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHFTQIYELDKEKITDGRSGPKHCMVSLPNPGCLDGLVLTTSMPTAQGQMHLVETRQLLDKGHVHAQELHLSNLTTGARCVTKRTWVRVAVTPVDQESVLQEMNLQP 190
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BLAST of mRNA_C-tenellus_contig10213.1.2 vs. uniprot
Match: A0A6H5JWZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWZ5_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 9.220e-69
Identity = 115/146 (78.77%), Postives = 129/146 (88.36%), Query Frame = 3 
Query:  303 MLVADLAIEAQLKAEQDHESRNVIAIEGTKFSIHKRTKINHFTEIFELGKEKVTQSRSGTKRCTVCLRDKGRMDSLVVTTSMPTAQGQLHLVETRQLLDKGHMLAQELHVSNLTTGGKCVTKRTWVRVPVTPLDQESVLEEMSVQP 740
            M VADLAIEAQ+KAEQDHESRNV AIEGTK  IHKRTKINHFT+I+EL KEK+T  RSG K C V LR+ G +D LV+TTSMPTAQGQ+HLVETRQLLDKGH+ AQELH+SNLTTG +CVTKRTWVRV VTPLDQESVL+EM++QP
Sbjct:    1 MNVADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHFTQIYELDKEKITDGRSGPKHCMVSLRNPGCLDGLVLTTSMPTAQGQMHLVETRQLLDKGHVHAQELHLSNLTTGARCVTKRTWVRVAVTPLDQESVLQEMNLQP 146
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BLAST of mRNA_C-tenellus_contig10213.1.2 vs. uniprot
Match: A0A835ZG67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG67_9STRA)

HSP 1 Score: 178 bits (451), Expect = 2.500e-48
Identity = 90/153 (58.82%), Postives = 115/153 (75.16%), Query Frame = 3 
Query:  267 NRSETMEGYLRCMLVADLAIEAQLKAEQDHESRNVIAIEGTKFSIHKRTKINHFTEIFELGKEKVTQSRSGTKRCTVCLRDKGRMDSLVVTTSMPTAQGQLHLVETRQLLDKGHMLAQELHVSNLTTGGKCVTKRTWVRVPVTPLDQESVLEE 725
            +RS+ ME YL+C+ VA+LAIEAQ K E D ESRNVI I+GT+F+IHKRTKIN  TE FELGKE+   +RSGT++  V LR  G   ++ VTT+MP + G LHL+ETR L+DKGH   QELH++NL TG KC+T+R WVRVP T  D+ ++ EE
Sbjct:   24 SRSDVMEPYLQCLNVAELAIEAQAKCEADSESRNVINIDGTQFAIHKRTKINALTEHFELGKEREMPARSGTRKTMVTLRKPGDYSAIDVTTAMPISTGALHLLETRTLMDKGHTCLQELHLTNLATGAKCLTRRVWVRVPTTHEDRAALEEE 176
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BLAST of mRNA_C-tenellus_contig10213.1.2 vs. uniprot
Match: D7G875_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G875_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 4.110e-17
Identity = 56/157 (35.67%), Postives = 88/157 (56.05%), Query Frame = 3 
Query:  258 LVLNRSETMEGYLRCMLVADLAIEAQLKAEQDHESRNVIAIEGTKFSIHKRTKINHFTEIFELGKEKVTQSRSGTKRCT--VCLRDKGRMDSLVVTTSMPTAQGQ--LHLVETRQLLDKGHMLAQELHVSNLTTGGKCVTKRTWVRVPVTPLDQESV 716
            L L+RS+TME +L+   V++    A ++AE  H + NVI +EG   +IH+RT  N+FTE F+L +EKV        R +  V +   G    +    S   + G+  +H++E+R +++      QE+ + NLTTG  CVT R W RVP+T   Q ++
Sbjct:   18 LDLSRSDTMERFLQVTRVSEQGTRAHVRAEARHGAFNVIHLEGDTITIHRRTCANNFTESFKLDEEKVKYDGIVRTRISELVSMPSSGPTGYVRSANSTAISGGRDDVHMLESRHIMEGSLSHTQEIRLHNLTTGEHCVTNRVWTRVPMTDEHQATI 174
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BLAST of mRNA_C-tenellus_contig10213.1.2 vs. uniprot
Match: A0A6H5JV86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV86_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 5.330e-15
Identity = 48/125 (38.40%), Postives = 72/125 (57.60%), Query Frame = 3 
Query:  333 QLKAEQDHESRNVIAIEGTKFSIHKRTKINHFTEIFELGKEKVTQSRSGTKRCTVCLRDKGRMDSLVVTTSMPTA----QGQLHLVETRQLLDKGHMLAQELHVSNLTTGGKCVTKRTWVRVPVT 695
            Q++AE  H + NVI +EG   +IHKRT  N+FTE F+LG+EKV        R +  +       +  V ++  TA    +  +H++E+R +++ G    QE+ + NLTTG  CVT R W RVP+T
Sbjct:    3 QVRAEARHGAFNVIHLEGDTITIHKRTCANNFTESFKLGEEKVKHDGILRTRISEVVSMPSSRPTGYVRSARSTAVSGGRDDVHMLESRHIMEGGLSHTQEIRLHNLTTGEHCVTNRVWTRVPMT 127
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BLAST of mRNA_C-tenellus_contig10213.1.2 vs. uniprot
Match: D7G874_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G874_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 4.980e-12
Identity = 57/161 (35.40%), Postives = 86/161 (53.42%), Query Frame = 3 
Query:  258 LVLNRSETMEGYLRCMLVADLAIEAQLKAEQDHESRNVIAIEGTKFSIHKRTKINHFTE-IFELGKEKV-----TQSRSGTKRCTVCLRDKGRMDSLVVTTSMPTAQGQ--LHLVETRQLLDKGHMLAQELHVSNLTTGGKCVTKRTWVRVPVTPLDQESV 716
            L L+RS+TME +LR   + +  I   + AE  H   NV+ +     +IHKRT  N +TE  + L +EKV     T++R        C    G     V + +  TA G+  +H++ETR +++ G    QE+ + NLTTG  CVT R W+RVP+T   Q ++
Sbjct:  124 LDLSRSDTMELFLRIHGMPEKHIREHVSAETLHGGFNVVGLGEDTITIHKRTCTNCYTERSYTLDEEKVKYNEVTRTRVSEVLSVPCSGPTG----FVRSANCSTAGGRDNVHMLETRHVVEGGLAHTQEIRLHNLTTGEDCVTNRVWMRVPMTEEHQAAL 280
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BLAST of mRNA_C-tenellus_contig10213.1.2 vs. uniprot
Match: D7G8E6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8E6_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.710e-7
Identity = 43/123 (34.96%), Postives = 62/123 (50.41%), Query Frame = 3 
Query:  342 AEQDHESR-NVIAIEGTKFSIHKRTKINHFTEIFELGKEKVTQSRSGTKRCTVCLRDKGRMDS----LVVTTSMPTAQGQLHLVETRQLLDKGHMLAQELHVSNLTTGGKCVTKRTWVRVPVT 695
            AE+ H    N+I ++ T  +IHKRT  N++TE F LG+EKVT         +  + + G        L+  TS P  Q    ++E R + + G    QE+    LTTG +C   RTW RV +T
Sbjct:   21 AERKHGGALNLIHLDETTLTIHKRTYRNNYTETFVLGEEKVTSVTPNRVSISTTVSNLGSSSRGYVCLIRNTSTPERQHNTEVLERRYVANGGLCHIQEIKARCLTTGEECGIVRTWRRVMMT 143
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10213.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FQR1_ECTSI6.860e-7677.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWZ5_9PHAE9.220e-6978.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZG67_9STRA2.500e-4858.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G875_ECTSI4.110e-1735.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JV86_9PHAE5.330e-1538.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G874_ECTSI4.980e-1235.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8E6_ECTSI1.710e-734.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10213contigC-tenellus_contig10213:453..3642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps23170
Model size2109
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.31e-09
EggNOG OGs2CINE@1|root,2T7ND@2759|Eukaryota,2XG6G@2836|Bacillariophyta
Cds size462
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10213.1.2prot_C-tenellus_contig10213.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10213 734..2276 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789121.014818-UTR-C-tenellus_contig10213:452..7331680789121.014818-UTR-C-tenellus_contig10213:452..733Choristocarpus tenellus KU2346UTRC-tenellus_contig10213 453..733 +
1680789121.0601625-UTR-C-tenellus_contig10213:2276..36421680789121.0601625-UTR-C-tenellus_contig10213:2276..3642Choristocarpus tenellus KU2346UTRC-tenellus_contig10213 2277..3642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789121.0253017-CDS-C-tenellus_contig10213:733..7871680789121.0253017-CDS-C-tenellus_contig10213:733..787Choristocarpus tenellus KU2346CDSC-tenellus_contig10213 734..787 +
1680789121.0333066-CDS-C-tenellus_contig10213:935..10361680789121.0333066-CDS-C-tenellus_contig10213:935..1036Choristocarpus tenellus KU2346CDSC-tenellus_contig10213 936..1036 +
1680789121.0416555-CDS-C-tenellus_contig10213:1435..16191680789121.0416555-CDS-C-tenellus_contig10213:1435..1619Choristocarpus tenellus KU2346CDSC-tenellus_contig10213 1436..1619 +
1680789121.0504453-CDS-C-tenellus_contig10213:2153..22761680789121.0504453-CDS-C-tenellus_contig10213:2153..2276Choristocarpus tenellus KU2346CDSC-tenellus_contig10213 2154..2276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10213.1.2

>prot_C-tenellus_contig10213.1.2 ID=prot_C-tenellus_contig10213.1.2|Name=mRNA_C-tenellus_contig10213.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=154bp
MEGYLRCMLVADLAIEAQLKAEQDHESRNVIAIEGTKFSIHKRTKINHFT
EIFELGKEKVTQSRSGTKRCTVCLRDKGRMDSLVVTTSMPTAQGQLHLVE
TRQLLDKGHMLAQELHVSNLTTGGKCVTKRTWVRVPVTPLDQESVLEEMS
VQP*
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mRNA from alignment at C-tenellus_contig10213:453..3642+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10213.1.2 ID=mRNA_C-tenellus_contig10213.1.2|Name=mRNA_C-tenellus_contig10213.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3190bp|location=Sequence derived from alignment at C-tenellus_contig10213:453..3642+ (Choristocarpus tenellus KU2346)
TTGTGGGAAGTCTAAACATGGCGGGACGCCTTCTACCGGAATATTCTTCT
GTGGTTGGTGCATGGGTTCTCGAGAAGTCCAGGTTGATTTCCTCCGTTTT
GAAAATCAGGAAATTCCATTGAAGTCAATTGCCGTATTTCGCTCAGGTAG
CTTGTGTGGACAAATACTAAGGGGACAAAGCGTAGTCCACCACGATCAAG
CCCTCATCCTCATATGTCTCAACTGAATGAAATCTTACTATTAAACTTGC
TATTTCGCTGGTGTTGAACAGGTCGGAGACAATGGAAGGATACTTGAGGT
GCATGCTTGTCGCGGACCTTGCCATCGAAGCTCAGGTATATCCTGTTTCT
TGTGCTTGCTGGGAACTGAAGAATGAGTTCTATGTGTGGAAGGGTCAGCG
CCCAAGGTATCTCTTCTTTGTAGTGAAACATTGTGAAATCGATGTCATTT
CCTACTTTTTCCTTACGCTGCTCCACCTTGCAGTTGAAAGCGGAACAAGA
CCATGAGAGCCGCAACGTTATAGCAATAGAGGGAACGAAATTCTCTATCC
ACAAGCGAACGAAGATTAACCACTTCACTGAAATGTGAGAACTGCACAAT
AGTACTGCAACGTGGTAAGAGATAAGTGAGACTTATTCAAAGTCAGAGTA
ACTTGTGCTCTTCAACCTTCAATTTATTGTAGGGTAATCGTAGATTTCCA
CAATGCTAATGTTGTTCAAATATAATTCAAGCACAGGATCCCTTGTTAGC
ATCTTGTTAGTTGGCAAGGGTCCCTAGTTTCATGTTATACTGCTCACTTA
TTTCTTCTATGGATAGTACCTTGTAGGCAATATGCCCGGTCCGCTTCCAA
CCCACACCAATTATGGTCGACGTAACTATTATTACTCGGTGTTCTTTTGA
AGGTACTGGTGACGATGCTCCTTTGATCACAGCGTACGCTACGGCATAGC
TTACCAGTCAAAACTAATACCTGTCAATTTAAGATTTGAACTGGGCAAGG
AAAAGGTGACTCAATCACGCAGTGGGACAAAGAGGTGTACAGTGTGCTTA
CGGGACAAGGGCCGAATGGATAGTCTAGTTGTGACTACGTCCATGCCCAC
TGCACAGGGTCAGTTGCATCTGGTGGAAACTCGACAATTGCTCGACAAAG
GACATATGCTGGCGCAGGTTAGAACACTTCAATCATTACATTTCTGTAGC
TTTTTTTTTTCGAAATGAGGCCAAGCAGAAACGAAATATATATATTTTTG
TCTTGTTTTGCATGTTCAAAGTCTACCATCATGTCTCTACCTCCAATTCC
TACCACATACTATTTGGTGAATTTTTATGGAGTTGCTTCCTGTACACCTC
ATGTGAGAGCATTTGGTTCCTCTAACAACTTTACCGATGTGATGCTGTTG
GTTTGTCTTCCCCATCAAGGTTTATTGCTATTTCTGAGTACGCAAGATGT
GGCTCTATTGTTGTGTCTCCTGCAGGTTGTGTTGCGTTTTAAGATGCGTA
AACAGCTCAAGTGTTTACTTGGCGGTTGTTCTTCCTAGCAAGTTGACACT
TGAGTGTGCTTTATTACCCAAGAATGGTGTTAATTCCTCTCTTGTCACCC
TGCTAACCCTAACCCTACTAAACCCTAGCCTAGGGTTCTAACCCTACTTT
GTATTTTCTCTCCGTCCTCTTCCTGCACCATAACTGTATGCCCTTGTTCA
GGAACTGCATGTTAGTAACCTCACCACTGGTGGCAAGTGTGTGACCAAAC
GCACCTGGGTCCGTGTACCTGTAACACCCTTAGACCAGGAGAGTGTCTTG
GAGGAGATGAGTGTGCAACCATAGCTCACCAGTGCCTCATTGTGGTGGGA
ATTCAGTGCTATCAATGGTCTTCTTTTTTACTCCTCTGTGACAATCAATC
CTCTAGCAATTTTTACAGCGCTGTGTTGACTCAGGTTTTTGTGAGTCACT
GCAACATGATTTCTATAACATAACTCTTACACAATTCCATCTTCTATCAG
AGCATAGAGATCATATGTAGGGGGGGCAATAACATGCTGAGTTGTTGAAG
GGGAACATATGTAGGTATGTTAGTCTGACTTGAAGAGAAACCTGACCCCT
GAACAGGAGGGTCAATTTTTTTTACAGGTCTCAAACTGATGCTGGAGAAG
TAACTCTTTGACCTTCTCTGTCGACTATATCTTGTTTGTTTTGTTGTGTG
TTTGTCCTCATGCTTGATGAAGGTGGGAGGGTTGCACGCATATTTGATGT
TTTTGTTTATAGTGCAATGGATTAGAGACAGATCCACATCGGTTTGATAT
TTCGCAGTTATTGTACACCTGTGCTATCCTGTTTGGTGCTGTACCACAAG
AGTGTTGTACCAAGATTGTACTGGGGAATGTTGAAGTGGGTCCAGGACAA
GATTTGAGGGAGGAGGAGGAGCAATACGTAGGGTTAGGGGTAGATGAACC
GAATGCTTTGAGAAGGTGCAAGTGGAGGAAATACAGTACAATTTGTTGTA
GTTCAACAGTTGGTTAAAGTAGTGTTGTAGATAGTATGAGTATTACGATG
TGTGGTTCCTCTGACTAAGTGTTGGAATATTCCCCAGGCTAGATGAAGAC
AATGGATATTACTAATTTTGTTGTACTCTCCACAGCATGTATAATTAGAT
TATAATTGCTTGGATGCAAATTGCCAACAGAAATGTAATTCAGAATTGAT
TGTGATTGATTGTGAGTTGATATTGTGAATCTGCACCCCATGCTTGAGTG
AGAGATGTGGCATCATTCAATTGTGTGATTGGGCTGTCCAGAGAGCTCTA
GAAGAGCCAGCGCATCTGTGGGAGAAGATTCCTTCAGAATTTCCATGGGG
TCATTATTTACCTGTGGTGAAAATGTCGGCGGAGCAGATAATACACAACC
TCTCAATCTAACTATATATGCAAAGGAGAAATTATAACTCAACTAACACA
ACATGCAATACTGGAAGGGTTGAAATCAACAGAACACCACACAGAGATGA
AGAGAATTGAAGATGTGATACCTTTTCTCAGGTGATGCAAAATGAGAAAA
AAGAGAGTACTCTTGACAAGAAGTAGTGATATGATCCTAACCCTAAATTT
CATCACGATACTGGCAGTAATATCATTAATATGCACTTGGGGTTAGGGCA
CTTGTTGGTAAGAGCAATATAATAAAAAAAAACATTTCCT
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Coding sequence (CDS) from alignment at C-tenellus_contig10213:453..3642+

>mRNA_C-tenellus_contig10213.1.2 ID=mRNA_C-tenellus_contig10213.1.2|Name=mRNA_C-tenellus_contig10213.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=462bp|location=Sequence derived from alignment at C-tenellus_contig10213:453..3642+ (Choristocarpus tenellus KU2346)
ATGGAAGGATACTTGAGGTGCATGCTTGTCGCGGACCTTGCCATCGAAGC
TCAGTTGAAAGCGGAACAAGACCATGAGAGCCGCAACGTTATAGCAATAG
AGGGAACGAAATTCTCTATCCACAAGCGAACGAAGATTAACCACTTCACT
GAAATATTTGAACTGGGCAAGGAAAAGGTGACTCAATCACGCAGTGGGAC
AAAGAGGTGTACAGTGTGCTTACGGGACAAGGGCCGAATGGATAGTCTAG
TTGTGACTACGTCCATGCCCACTGCACAGGGTCAGTTGCATCTGGTGGAA
ACTCGACAATTGCTCGACAAAGGACATATGCTGGCGCAGGAACTGCATGT
TAGTAACCTCACCACTGGTGGCAAGTGTGTGACCAAACGCACCTGGGTCC
GTGTACCTGTAACACCCTTAGACCAGGAGAGTGTCTTGGAGGAGATGAGT
GTGCAACCATAG
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