mRNA_C-tenellus_contig10210.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10210.3.1
Unique NamemRNA_C-tenellus_contig10210.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10210.3.1 vs. uniprot
Match: A0A6H5J7D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7D3_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 3.570e-38
Identity = 93/226 (41.15%), Postives = 111/226 (49.12%), Query Frame = 2
Query:  209 DPEEDEPTGKTLWDATQVLYNIIAAPETDNPCSVTAQRVIELGAGTGALGVGMVRAGAVEVVCTDLPCHLGRIQGTAKANGA----------------------------------------------EYSVEVDVLRWGG--DVSHLNPP----------------------------FDVIVMSEVLYWPALDLLQEDTLEPLATTLVDLSRCGTRVMLAYKER 658
            D E+ E TG+TLWD TQVL++++A P  DN  +V  +RVIELG GTGAL VG+ R+GA  V CTDLPCHL RI+ T  AN                                                E  V V  LRWG   D+++                                FDVIV+SEVLYWPALDLLQEDT EPL  TLV LS+ GT+V+L YKER
Sbjct:   59 DEEDMELTGRTLWDCTQVLWDLVADPRKDNMFTVRDKRVIELGGGTGALSVGLARSGAASVTCTDLPCHLVRIRSTVLANARTSTSCRRGVPASDVDVGGDCGGVVAGTVNRGSDLPAATGVPTAATREARVCVVALRWGEAEDIANARASPCNNHSGEGRRCSXXXXXXXXXXXESWAFDVIVLSEVLYWPALDLLQEDTREPLRRTLVGLSKPGTKVILIYKER 284          
BLAST of mRNA_C-tenellus_contig10210.3.1 vs. uniprot
Match: D8LGR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGR1_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.420e-35
Identity = 91/236 (38.56%), Postives = 106/236 (44.92%), Query Frame = 2
Query:  209 DPEEDEPTGKTLWDATQVLYNIIAAPETDNPCSVTAQRVIELGAGTGALGVGMVRAGAVEVVCTDLPCHLGRIQGTAKANGA--------------------------------------------------------EYSVEVDVLRWGGDVSHLNP------------------------------PFDVIVMSEVLYWPALDLLQEDTLEPLATTLVDLSRCGTRVMLAYKER 658
            D E+ E TG+TLWD TQVL++++A P   N  +V  +RVIELG GTGAL VG+ R+ A  V CTDLPCHL  IQ T  AN                                                          E  V V  LRWG +    N                                FDVIV+SEVLYWPALDLLQEDT EPL  TLV LS+ GT+V+L YKER
Sbjct:   59 DEEDMELTGRTLWDCTQVLWDLVADPREGNTFTVRDKRVIELGGGTGALSVGLARSEAASVTCTDLPCHLALIQSTVVANARTTASCRRGVLGSDVGGGGXXXXXXXXXXXXXXXXXXXTSRGSDPPAATEVPAAAAREARVRVVALRWGEEEDIANARALPFNNHSGERXXXXXXXXXXXXXXXXXSAFDVIVLSEVLYWPALDLLQEDTREPLRRTLVGLSKPGTKVILIYKER 294          
BLAST of mRNA_C-tenellus_contig10210.3.1 vs. uniprot
Match: A0A835YUL1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUL1_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.310e-21
Identity = 60/141 (42.55%), Postives = 76/141 (53.90%), Query Frame = 2
Query:  224 EPTGKTLWDATQVLYNIIAAPETDNPCSVTAQRVIELGAGTGALGVGMVRAGAVEVVCTDLPCHLGRIQGTAKANGAE--YSVEVDVLRWGGDVSHLNP--------PFDVIVMSEVLYWPALDLLQEDTLEPLATTLVDL 616
            E TGK LWD + VL  ++  P   +P  VT +   ELGAGTG L V    AGA  VV TD  CH+ RI+  A  NG     +     L WG   +            P D++++SEVLYWPALD+ +EDTL+PL  TL  L
Sbjct:  523 EGTGKKLWDCSLVLMELVTRP--GSPWCVTGKTCCELGAGTGVLSVACALAGAARVVATDQACHVPRIRAHAALNGVGGGAAFRAAALPWGTGAAAAAALLAAEGAAPCDLVLLSEVLYWPALDVFEEDTLQPLVDTLAAL 661          
BLAST of mRNA_C-tenellus_contig10210.3.1 vs. uniprot
Match: A0A6P8IFM5_ACTTE (protein-lysine methyltransferase METTL21D-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IFM5_ACTTE)

HSP 1 Score: 87.4 bits (215), Expect = 1.530e-17
Identity = 59/160 (36.88%), Postives = 83/160 (51.88%), Query Frame = 2
Query:  185 GCGSSLCSDPEEDEPTGKTLWDATQVLYNIIAAPETDNPCSVTAQRVIELGAGTGALGVGMVRAGAVEVVCTDLPCHLGRIQGTAKANG--AEYSVEVDVLRWGGDVSHLNPPFDVIVMSEVLYWPALDLLQEDTLEPLATTLVDLSRCGTRVMLAYKER 658
            G   +L     E+   G  +WDA  VL   +      N   +  +R IELGAGTG +G+     GA +VVCTDL   +  I+     N      S+   VL+WG DVS L PPFD I +++ +Y+       E++LEPL  T+ DLS   T + L+Y+ER
Sbjct:   22 GIYGTLVIKQAEEGDVGCVVWDAAIVLEKYLETEGFLNKRQMKGKRAIELGAGTGLVGLVASVLGA-DVVCTDLQDIIPLIELNIITNKHLVTGSLSAAVLKWGEDVSQLLPPFDYIFIADCIYY-------EESLEPLIKTMCDLSGPSTLIYLSYEER 173          
BLAST of mRNA_C-tenellus_contig10210.3.1 vs. uniprot
Match: A0A5K1FQ57_9MAGN (Uncharacterized protein (Fragment) n=2 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1FQ57_9MAGN)

HSP 1 Score: 83.2 bits (204), Expect = 1.960e-16
Identity = 54/153 (35.29%), Postives = 78/153 (50.98%), Query Frame = 2
Query:  206 SDPEEDEPTGKTLWDATQVLYNIIAAPETDNPCSVTAQRVIELGAGTGALGVGMVRAGAVEVVCTDLPCHLGRIQGTAKANGAEYSVEVDVLRWG--GDVSHLNPPFDVIVMSEVLYWPALDLLQEDTLEPLATTLVDLSRCGTRVMLAYKER 658
            SD     P G +LWD   VL + + +        +  + V+ELGAGTG  G+   + G+  VV TDLP  +  ++   +AN     VEV  LRWG  GD S L PPFDV++MS++LY              L  ++  LS   T ++L+Y+ R
Sbjct:   20 SDASSSAPVGASLWDCAIVLAHYLPS------VPLAGKSVVELGAGTGLPGLTAAKLGSSRVVLTDLPELIPGLRRNVEANELVDGVEVRPLRWGDEGDCSALGPPFDVVLMSDLLY-------NVSAAPGLCQSIRALSDAQTLILLSYELR 159          
BLAST of mRNA_C-tenellus_contig10210.3.1 vs. uniprot
Match: T0S637_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S637_SAPDV)

HSP 1 Score: 87.4 bits (215), Expect = 2.200e-16
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  197 SLCSDPEEDEPTGKTLWDATQVLYNIIAAPETDNPCSVTAQRVIELGAGTGALGVGMVRAGAVEVVCTDLPCHLGRIQGTAKANGAEYSVEVDVLRWGGDVSHLNPPFDVIVMSEVLYWPALDLLQEDTLEPLATTLVDLSRCGTRVMLAYKER 658
            +L   P      GK LWD+  +L   +A     NP  +  +RV+E+G+G G +G+     GA  V  TD+   +  +Q   K N  E       L WG   +HL+PPFDV+VMS+V+Y P           PL TTL+D++   T +++A++ R
Sbjct:  307 TLAESPGHLGIAGK-LWDSALILTTYLAR----NPQVLAGKRVLEVGSGLGLVGMVCAHLGAAAVTLTDMDEVVPMLQYNLKLNALEAVASASALCWGTSPAHLSPPFDVVVMSDVVYDPT-------GYAPLVTTLLDVTTPSTTILMAHRSR 448          
BLAST of mRNA_C-tenellus_contig10210.3.1 vs. uniprot
Match: A0A7L4NGS8_9AVES (MT21D methyltransferase (Fragment) n=1 Tax=Ceyx cyanopectus TaxID=390723 RepID=A0A7L4NGS8_9AVES)

HSP 1 Score: 81.6 bits (200), Expect = 1.310e-15
Identity = 53/145 (36.55%), Postives = 76/145 (52.41%), Query Frame = 2
Query:  233 GKTLWDATQVLYNIIAAPETDNPCSVTAQRVIELGAGTGALGVGMVRAGAVEVVCTDLPCHLGRIQGTAKANGAEY---SVEVDVLRWGGDVSHLNPPFDVIVMSEVLYWPALDLLQEDTLEPLATTLVDLSRCGTRVMLAYKER 658
            G  +WDA  VL   +        C +  +RV+ELGAGTGA+G+     GA EV  TDL   L  + G    N       SV   VL+WG DV+   PP D I++++ +Y+       E++LEPL  TL DL+   T ++  Y++R
Sbjct:   46 GCVVWDAALVLAKFLET----GACPLAGRRVLELGAGTGAVGIMAATLGA-EVTVTDLE-ELQELLGVNIENNKHLVTGSVRAKVLKWGEDVTEFQPPPDYILLADCIYY-------EESLEPLLKTLKDLTGPDTCILCCYEQR 177          
BLAST of mRNA_C-tenellus_contig10210.3.1 vs. uniprot
Match: A0A7J7QNL2_9CHLO (Putative methyltransferase-domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QNL2_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 1.770e-15
Identity = 47/146 (32.19%), Postives = 79/146 (54.11%), Query Frame = 2
Query:  233 GKTLWDATQVLYNIIAAPETDNPCSVTAQRVIELGAGTGALGVGMVRAGAVEVVCTDLPCHLGRIQGTAKANGAEYSVEVDVLRWGGDV--SHLNPPFDVIVMSEVLYWPALDLLQEDTLEPLATTLVDLSRCGTRVMLA--YKER 658
            G  +WDA  VL N +         S++ +RV+ELGAGTG +G+     GA EV+ TDLP H+  I G  K NG +++     L WG     + +  P+DV++ S+++Y       Q+  ++ L +++ DL+   + +  +  Y+ER
Sbjct:   54 GCVVWDAALVLVNYLVKQAEIGALSLSGKRVVELGAGTGVVGLTAAALGAAEVLLTDLPHHVQHISGNIKRNGLQHTATAAALEWGQQPLPAPVAAPYDVVLCSDLVY-------QQHAVQQLLSSMRDLAGPASVIYASCEYRER 192          
BLAST of mRNA_C-tenellus_contig10210.3.1 vs. uniprot
Match: A0A1Y1IGA6_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IGA6_KLENI)

HSP 1 Score: 81.6 bits (200), Expect = 4.650e-15
Identity = 56/157 (35.67%), Postives = 81/157 (51.59%), Query Frame = 2
Query:  197 SLCSDPEEDEP-TGKTLWDATQVLYNIIAAPETDN--PCSVTAQRVIELGAGTGALGVGMVRAGAVEVVCTDLPCHLGRIQGTAKANGAEYSVEVDVLRWGGDVSHLNPPFDVIVMSEVLYWPALDLLQEDTLEPLATTLVDLSRCGTRVMLAYKER 658
            S   DP+     TG  +WD    +       ET +  P S   +RVIE+GAGTG +G+ +   GA +VV TD    +  ++   +AN  E     DVL WG D SHL PP D +V S++LY  +L       +  L  TL+DLS   T++++ Y+ R
Sbjct:   49 SSLMDPQTGRALTGAWVWDCAIAVAKWF---ETQSWPPGSFKGKRVIEVGAGTGLVGLALASLGA-DVVLTDREALMPGLRTNIQANQLEERCRADVLEWGSDASHLFPPVDYVVGSDILYDMSL-------VPALCKTLLDLSGPNTQIIIGYELR 194          
BLAST of mRNA_C-tenellus_contig10210.3.1 vs. uniprot
Match: A0A7L1NVK2_RHICY (MT21D methyltransferase (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7L1NVK2_RHICY)

HSP 1 Score: 79.3 bits (194), Expect = 1.570e-14
Identity = 51/144 (35.42%), Postives = 75/144 (52.08%), Query Frame = 2
Query:  233 GKTLWDATQVLYNIIAAPETDNPCSVTAQRVIELGAGTGALGVGMVRAGAVEVVCTDLPCHLGRIQGTAKANG--AEYSVEVDVLRWGGDVSHLNPPFDVIVMSEVLYWPALDLLQEDTLEPLATTLVDLSRCGTRVMLAYKER 658
            G  +WDA  VL   +        C +  + V+ELGAGTGA+G+     GA +V  TDL      ++   + N      SV   VL+WG DV+   PP D I+M++ +Y+       E++LEPL  TL DL+   T V+  Y++R
Sbjct:   38 GSVVWDAALVLAKFLET----GACPLARRHVLELGAGTGAVGIMAATLGA-DVTVTDLEELQELLEANIEHNRHLVTGSVRAKVLKWGEDVTEFQPPPDYILMADCIYY-------EESLEPLLKTLKDLTGPDTCVLCCYEQR 169          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10210.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7D3_9PHAE3.570e-3841.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGR1_ECTSI1.420e-3538.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YUL1_9STRA1.310e-2142.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6P8IFM5_ACTTE1.530e-1736.88protein-lysine methyltransferase METTL21D-like n=1... [more]
A0A5K1FQ57_9MAGN1.960e-1635.29Uncharacterized protein (Fragment) n=2 Tax=Nymphae... [more]
T0S637_SAPDV2.200e-1633.77Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A7L4NGS8_9AVES1.310e-1536.55MT21D methyltransferase (Fragment) n=1 Tax=Ceyx cy... [more]
A0A7J7QNL2_9CHLO1.770e-1532.19Putative methyltransferase-domain-containing prote... [more]
A0A1Y1IGA6_KLENI4.650e-1535.67Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A7L1NVK2_RHICY1.570e-1435.42MT21D methyltransferase (Fragment) n=3 Tax=Neognat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10210contigC-tenellus_contig10210:3868..4703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008606257.1
PFAMsMethyltransf_16
Model size661
Max annot lvl2759|Eukaryota
KEGG koko:K21805,ko:K21806
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.24e-17
EggNOG OGsKOG2793@1|root,KOG2793@2759|Eukaryota
Ec32 ortholog descriptionNicotinamide N-methyltransferase-like
Ec32 orthologEc-07_005350.1
Descriptionlysine N-methyltransferase activity
Cds size543
COG categoryS
BRITEko00000,ko01000,ko03019,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789120.9594257-CDS-C-tenellus_contig10210:3867..42091680789120.9594257-CDS-C-tenellus_contig10210:3867..4209Choristocarpus tenellus KU2346CDSC-tenellus_contig10210 3868..4209 -
1680789120.9768875-CDS-C-tenellus_contig10210:4384..45851680789120.9768875-CDS-C-tenellus_contig10210:4384..4585Choristocarpus tenellus KU2346CDSC-tenellus_contig10210 4385..4585 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789120.9883435-UTR-C-tenellus_contig10210:4585..47031680789120.9883435-UTR-C-tenellus_contig10210:4585..4703Choristocarpus tenellus KU2346UTRC-tenellus_contig10210 4586..4703 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10210.3.1prot_C-tenellus_contig10210.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10210 3868..4585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10210.3.1

>prot_C-tenellus_contig10210.3.1 ID=prot_C-tenellus_contig10210.3.1|Name=mRNA_C-tenellus_contig10210.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=181bp
MKPGTSMKLVSCWGLDPIVVSNGCGSSLCSDPEEDEPTGKTLWDATQVLY
NIIAAPETDNPCSVTAQRVIELGAGTGALGVGMVRAGAVEVVCTDLPCHL
GRIQGTAKANGAEYSVEVDVLRWGGDVSHLNPPFDVIVMSEVLYWPALDL
LQEDTLEPLATTLVDLSRCGTRVMLAYKER*
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mRNA from alignment at C-tenellus_contig10210:3868..4703-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10210.3.1 ID=mRNA_C-tenellus_contig10210.3.1|Name=mRNA_C-tenellus_contig10210.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=836bp|location=Sequence derived from alignment at C-tenellus_contig10210:3868..4703- (Choristocarpus tenellus KU2346)
CAAGAAATATTGAAATCTTGTGTTTGTGTTTATGTTTCCCCTTCATTCAG TCTTGATGCATTTTGCATCACAATAGTGGGACGGTCAGTTTAATAGTGGT AATAGTGGTGATATCGTAATGAAACCTGGAACGAGCATGAAGTTGGTGTC ATGTTGGGGGTTAGATCCCATTGTTGTCTCCAACGGTTGTGGTAGTTCAT TGTGTTCTGACCCAGAGGAAGACGAGCCAACCGGGAAAACACTATGGGAC GCCACTCAGGTTCTCTACAACATAATTGCGGCACCAGAAACTGATAATCC CTGCTCAGTTACTGCGCAGGTTGGTGCGAGATTTCCCAAATCAGTCCTAC ACCCCGTCTTGCGAGCTTAACCTGTTTCACGATCTTATCCGCTACGAACT CTACAATCACGGAAACACACAACTCTAATGTACTGGTGGTCCATGGAAAG GCTGCTCTCTGTTGCTACTTTGCTACGCCTTTCACACGTTACAGCGTGTC ATCGAGCTAGGTGCTGGCACAGGAGCTCTCGGTGTTGGTATGGTTAGAGC TGGAGCAGTTGAAGTCGTCTGCACGGACCTGCCCTGCCACTTGGGTCGTA TCCAGGGCACTGCAAAAGCAAATGGTGCAGAATACTCTGTAGAGGTCGAT GTTCTTCGTTGGGGAGGAGATGTGAGTCACCTGAATCCTCCATTTGATGT GATAGTCATGAGTGAGGTGCTCTACTGGCCTGCGCTGGACCTGCTCCAGG AGGACACCCTAGAGCCGTTGGCGACAACACTTGTGGACCTCTCAAGATGC GGTACCCGTGTGATGCTGGCTTACAAGGAGAGGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10210:3868..4703-

>mRNA_C-tenellus_contig10210.3.1 ID=mRNA_C-tenellus_contig10210.3.1|Name=mRNA_C-tenellus_contig10210.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=543bp|location=Sequence derived from alignment at C-tenellus_contig10210:3868..4703- (Choristocarpus tenellus KU2346)
ATGAAACCTGGAACGAGCATGAAGTTGGTGTCATGTTGGGGGTTAGATCC
CATTGTTGTCTCCAACGGTTGTGGTAGTTCATTGTGTTCTGACCCAGAGG
AAGACGAGCCAACCGGGAAAACACTATGGGACGCCACTCAGGTTCTCTAC
AACATAATTGCGGCACCAGAAACTGATAATCCCTGCTCAGTTACTGCGCA
GCGTGTCATCGAGCTAGGTGCTGGCACAGGAGCTCTCGGTGTTGGTATGG
TTAGAGCTGGAGCAGTTGAAGTCGTCTGCACGGACCTGCCCTGCCACTTG
GGTCGTATCCAGGGCACTGCAAAAGCAAATGGTGCAGAATACTCTGTAGA
GGTCGATGTTCTTCGTTGGGGAGGAGATGTGAGTCACCTGAATCCTCCAT
TTGATGTGATAGTCATGAGTGAGGTGCTCTACTGGCCTGCGCTGGACCTG
CTCCAGGAGGACACCCTAGAGCCGTTGGCGACAACACTTGTGGACCTCTC
AAGATGCGGTACCCGTGTGATGCTGGCTTACAAGGAGAGGTGA
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