mRNA_C-tenellus_contig10210.1.3 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10210.1.3
Unique NamemRNA_C-tenellus_contig10210.1.3
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10210.1.3 vs. uniprot
Match: D7G7C7_ECTSI (Putative Ntdin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C7_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 1.540e-40
Identity = 69/119 (57.98%), Postives = 87/119 (73.11%), Query Frame = 1
Query:    1 MIEEVSPQFAHKFVQ-EGFAYIDVRTEEECANGHPSGSVCVPAFWHTGMGMKANPDFVKQVAQHNPCPSGKNTRLVIGCQMGSRSAAACEWLEESGYTTVFNVVGGYSSWARDESLPVE 354
            M +EV PQFA+  VQ EG+AY+DVR + E  +G P+G+V VPAF+ T  GM  NPDFV Q+A+  P    K  +LVIGCQMGSRSA A  WLE +GY+ V N+ GG+S+WARD+SLPVE
Sbjct:    1 MFDEVGPQFANNLVQQEGWAYVDVRADYEFEHGRPAGAVNVPAFFSTAQGMTVNPDFVDQIAEKFP---DKAAKLVIGCQMGSRSAQAAGWLENAGYSGVVNMEGGFSAWARDDSLPVE 116          
BLAST of mRNA_C-tenellus_contig10210.1.3 vs. uniprot
Match: A0A6H5K3G8_9PHAE (Rhodanese domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3G8_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 2.920e-39
Identity = 67/119 (56.30%), Postives = 86/119 (72.27%), Query Frame = 1
Query:    1 MIEEVSPQFAHKFVQ-EGFAYIDVRTEEECANGHPSGSVCVPAFWHTGMGMKANPDFVKQVAQHNPCPSGKNTRLVIGCQMGSRSAAACEWLEESGYTTVFNVVGGYSSWARDESLPVE 354
            M + V PQFA+  VQ EG+ Y+DVR + E  +GHP+G+V VPAF+ T  GM  NPDFV Q+A+  P    K  +LVIGCQMGSRSA A  WLE +GY+ + N+ GG+S+WARD+SLPVE
Sbjct:   52 MFDGVGPQFANNLVQQEGWTYVDVRADYEFEHGHPAGAVNVPAFFSTAQGMTVNPDFVDQIAEKFP---DKAAKLVIGCQMGSRSAQAAGWLENAGYSGIVNMEGGFSAWARDDSLPVE 167          
BLAST of mRNA_C-tenellus_contig10210.1.3 vs. uniprot
Match: A0A3M1KCZ5_9BACT (Rhodanese-like domain-containing protein n=1 Tax=Candidatus Dadabacteria bacterium TaxID=2080303 RepID=A0A3M1KCZ5_9BACT)

HSP 1 Score: 104 bits (260), Expect = 1.590e-26
Identity = 52/115 (45.22%), Postives = 70/115 (60.87%), Query Frame = 1
Query:    4 IEEVSPQFA-HKFVQEGFAYIDVRTEEECANGHPSGSVCVPAFWHTGMGMKANPDFVKQVAQHNPCPSGKNTRLVIGCQMGSRSAAACEWLEESGYTTVFNVVGGYSSWARDESL 345
            ++ V+P  A H    EG+ Y+DVRTE E   GHP+GSVC+PAF  T  GM  NP+F+    +H       +T +V+GCQ G RSA A EWLE++GY TV N  GG+      E++
Sbjct:    1 MQHVTPDEALHLVEDEGYVYLDVRTEAEFQAGHPAGSVCIPAFLRTPAGMAPNPEFLDIARRHLKL----DTPIVVGCQAGGRSAKAAEWLEQAGYQTVVNCSGGFGGGRDPETM 111          
BLAST of mRNA_C-tenellus_contig10210.1.3 vs. uniprot
Match: A0A4Y7K3I3_PAPSO (Rhodanese domain-containing protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7K3I3_PAPSO)

HSP 1 Score: 99.0 bits (245), Expect = 1.130e-23
Identity = 50/116 (43.10%), Postives = 70/116 (60.34%), Query Frame = 1
Query:    7 EEVSPQFAHKFVQEGFAYIDVRTEEECANGHPSGSVCVPAFWHTGMGMKANPDFVKQVAQHNPCPSGKNTRLVIGCQMGSRSAAACEWLEESGYTTVFNVVGGYSSWARDESLPVE 354
            + V    AH+ VQ G  Y+DVRT EE A GHP G+V VP  +  G GM  NP+F+++V++H     G++  +V+GCQ G RS  A   L  +G++ V +V GGYS W  +  LP E
Sbjct:   73 KSVHVSVAHELVQAGHRYLDVRTSEEFAAGHPPGAVNVPYLFRMGAGMANNPNFLEEVSKH----FGEDAAIVVGCQKGMRSLKAVADLSNAGFSGVIDVAGGYSEWTAN-GLPTE 183          
BLAST of mRNA_C-tenellus_contig10210.1.3 vs. uniprot
Match: L1JUH6_GUITC (Rhodanese domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JUH6_GUITC)

HSP 1 Score: 94.4 bits (233), Expect = 1.050e-22
Identity = 46/95 (48.42%), Postives = 62/95 (65.26%), Query Frame = 1
Query:   46 EGFAYIDVRTEEECANGHPSGSVCVPAFWHTGMG-MKANPDFVKQVAQHNPCPSGKNTRLVIGCQMGSRSAAACEWLEESGYTTVFNVVGGYSSW 327
            EGF Y+DVRT EE A GHP+ ++ +PAF  TG G M  +  F+K +  + P    K+ +LVIGCQ G+RSA AC+WL E+GYT +     G+S W
Sbjct:   19 EGFTYVDVRTNEEFARGHPTDAINIPAFAITGDGPMPMSSTFLKLIQTNFP---NKDEKLVIGCQAGNRSAMACKWLSEAGYTNIVESNKGFSGW 110          
BLAST of mRNA_C-tenellus_contig10210.1.3 vs. uniprot
Match: A0A2E8HLZ8_9BACT (Rhodanese n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2E8HLZ8_9BACT)

HSP 1 Score: 90.9 bits (224), Expect = 6.070e-21
Identity = 46/118 (38.98%), Postives = 71/118 (60.17%), Query Frame = 1
Query:    7 EEVSPQFAHKFVQEG-FAYIDVRTEEECANGHPSGSVCVPAFWHTGMGMKANPDFVKQVAQHNPCPSGKNTRLVIGCQMGSRSAAACEWLEESGYTTVFNVVGGYSSWARDESLPVER 357
            +E+ P+ A + + E  +AY+DVR+E E  NGHPSG++ +P  +   +GM  NPDF+  V  +      +   +++GCQMGSRS  A E L  +G+T V NV+GG+     D+   VE+
Sbjct:    4 KEIRPEEAKRLMDESAYAYVDVRSEPEFLNGHPSGALNIPVLFPEALGMVPNPDFLTVVLAN----FDRQAPILLGCQMGSRSGRAAEILVAAGFTDVSNVLGGFGGARDDQGQVVEK 117          
BLAST of mRNA_C-tenellus_contig10210.1.3 vs. uniprot
Match: E1ZKE9_CHLVA (Rhodanese domain-containing protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZKE9_CHLVA)

HSP 1 Score: 89.0 bits (219), Expect = 1.250e-20
Identity = 48/107 (44.86%), Postives = 63/107 (58.88%), Query Frame = 1
Query:   13 VSPQFAHKFVQEGFAYIDVRTEEECANGHPSGSVCVPAFWHTGMGMKANPDFVKQVAQHNPCPSGKNTRLVIGCQMGSRSAAACEWLEESGYTTVFNVVGGYSSWAR 333
            V  Q A + V+ G  Y+DVRT EE A GHP+G+  VP F   G GM  NPDF+KQ      CP  K  ++ +GCQ G RS AA   L ++G++ V N+ GG+S   R
Sbjct:    2 VDVQGASELVKGGVKYVDVRTAEEYAAGHPAGAANVPVFVKQGGGMAPNPDFLKQFEA--ACPD-KAAQVCVGCQSGKRSEAAARMLADAGFSGVVNMEGGFSGELR 105          
BLAST of mRNA_C-tenellus_contig10210.1.3 vs. uniprot
Match: A0A2W4LW69_9PROT (Rhodanese-like domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4LW69_9PROT)

HSP 1 Score: 87.8 bits (216), Expect = 9.490e-20
Identity = 49/129 (37.98%), Postives = 72/129 (55.81%), Query Frame = 1
Query:    4 IEEVSPQFAHKFVQEGFAYIDVRTEEECANGHPSGSVCVPAFWHTGMGMKANPDFVKQVAQHNPCPSGKNTRLVIGCQMGSRSAAACEWLEESGYTTVFNVVGGYSS-----------WARDESLPVER 357
            I+ V+P+  ++ +Q G  Y+DVR+E+E A GHP G++ VP       GM  NPDF+  + +      GKN RLV+GC+ G RS  A E L  +GYT V ++  G+             W++ E LPVE+
Sbjct:    3 IKSVTPEQTYELLQSGAVYVDVRSEQEFAEGHPPGALNVPIAHLGPGGMTPNPDFMSVIER----AFGKNERLVVGCKAGGRSRRAAELLVRAGYTDVSDMTAGWEGSRDPFGRPLPGWSKRE-LPVEK 126          
BLAST of mRNA_C-tenellus_contig10210.1.3 vs. uniprot
Match: A0A800N310_9BACT (Rhodanese-like domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800N310_9BACT)

HSP 1 Score: 86.7 bits (213), Expect = 2.490e-19
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    7 EEVSPQFAHKFVQEGFAYIDVRTEEECANGHPSGSVCVPAFWHTGMGMKANPDFVKQVAQHNPCPSGKNTRLVIGCQMGSRSAAACEWLEESGYTTVFNVVGGY 318
            E + P+ A   +  G+ Y+DVRT EE   GHP G+  +P  + +  GM+ N  F+  V +H P     +TR V+GC+ G RSA ACE +E+ GY  + N+ GGY
Sbjct:    4 ETILPEGASTRLTSGWVYLDVRTSEEYDEGHPPGAYNIPVAFMSPAGMEPNETFLSVVQRHFP----SDTRFVVGCKAGGRSARACEIMEQGGYVCLANMDGGY 103          
BLAST of mRNA_C-tenellus_contig10210.1.3 vs. uniprot
Match: A0A7S4KUQ8_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KUQ8_GUITH)

HSP 1 Score: 89.0 bits (219), Expect = 8.110e-19
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:   58 YIDVRTEEECANGHPSGSVCVPAFWHTGMG-MKANPDFVKQVAQHNPCPSGKNTRLVIGCQMGSRSAAACEWLEESGYTTVFNVVGGYSSWARDESLPVE 354
            ++D RTE+E  NG   G+V VPAF  T  G +    DF+K++ Q  P    KN+++V+GCQ G RSA A  WL E GYT + N  GG+S W   + LP E
Sbjct:  207 FVDCRTEQEYDNGRVKGAVNVPAFLDTPQGRLPVREDFLKRMLQKFP---DKNSKIVVGCQRGIRSAEAASWLCEVGYTNIVNQDGGFSYWVTKKDLPTE 303          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10210.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7C7_ECTSI1.540e-4057.98Putative Ntdin n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5K3G8_9PHAE2.920e-3956.30Rhodanese domain-containing protein n=1 Tax=Ectoca... [more]
A0A3M1KCZ5_9BACT1.590e-2645.22Rhodanese-like domain-containing protein n=1 Tax=C... [more]
A0A4Y7K3I3_PAPSO1.130e-2343.10Rhodanese domain-containing protein n=2 Tax=Papave... [more]
L1JUH6_GUITC1.050e-2248.42Rhodanese domain-containing protein n=2 Tax=Guilla... [more]
A0A2E8HLZ8_9BACT6.070e-2138.98Rhodanese n=1 Tax=Gemmatimonadetes bacterium TaxID... [more]
E1ZKE9_CHLVA1.250e-2044.86Rhodanese domain-containing protein (Fragment) n=1... [more]
A0A2W4LW69_9PROT9.490e-2037.98Rhodanese-like domain-containing protein n=1 Tax=P... [more]
A0A800N310_9BACT2.490e-1940.38Rhodanese-like domain-containing protein n=1 Tax=P... [more]
A0A7S4KUQ8_GUITH8.110e-1945.00Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10210contigC-tenellus_contig10210:589..2467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G7C7
PFAMsRhodanese
Model size360
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004792,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0007568,GO:0008150,GO:0009507,GO:0009536,GO:0009611,GO:0009719,GO:0009725,GO:0009753,GO:0010033,GO:0016740,GO:0016782,GO:0016783,GO:0032502,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:1901700
Exons3
Evalue2.53e-41
EggNOG OGsCOG0607@1|root,KOG1530@2759|Eukaryota
Ec32 ortholog descriptionRhodanese-like domain
Ec32 orthologEc-04_003300.1
Descriptionthiosulfate sulfurtransferase activity
Cds size360
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789120.9050567-CDS-C-tenellus_contig10210:588..6551680789120.9050567-CDS-C-tenellus_contig10210:588..655Choristocarpus tenellus KU2346CDSC-tenellus_contig10210 589..655 +
1680789120.9183881-CDS-C-tenellus_contig10210:1339..14831680789120.9183881-CDS-C-tenellus_contig10210:1339..1483Choristocarpus tenellus KU2346CDSC-tenellus_contig10210 1340..1483 +
1680789120.9280818-CDS-C-tenellus_contig10210:2318..24671680789120.9280818-CDS-C-tenellus_contig10210:2318..2467Choristocarpus tenellus KU2346CDSC-tenellus_contig10210 2319..2467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10210.1.3prot_C-tenellus_contig10210.1.3Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10210 589..2467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10210.1.3

>prot_C-tenellus_contig10210.1.3 ID=prot_C-tenellus_contig10210.1.3|Name=mRNA_C-tenellus_contig10210.1.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=120bp
MIEEVSPQFAHKFVQEGFAYIDVRTEEECANGHPSGSVCVPAFWHTGMGM
KANPDFVKQVAQHNPCPSGKNTRLVIGCQMGSRSAAACEWLEESGYTTVF
NVVGGYSSWARDESLPVER*
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mRNA from alignment at C-tenellus_contig10210:589..2467+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10210.1.3 ID=mRNA_C-tenellus_contig10210.1.3|Name=mRNA_C-tenellus_contig10210.1.3|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1879bp|location=Sequence derived from alignment at C-tenellus_contig10210:589..2467+ (Choristocarpus tenellus KU2346)
ATGATTGAGGAAGTCAGCCCTCAGTTCGCCCACAAATTTGTGCAGGAAGG CTTCGCTTACATAGATGGTGAGCCTTTCCCCAAGGATTTTGATTTCCTTT GTCAAGATCGTGGGTTTGCGCAATTACGTCGGAAATCATGATGGAATGAG AGTGGTATGCGACCAATCTCGAGGGTTTGAGTGTACCATTTTTTGTAGGG GGAGCAGCGAGTAGTTCTACAGGTACATCACATCAAGAGCATCTATAACC TGCGGTCGTTGCCATCAGAAACAACATTCCGGGAATCGATCGCCAGCCTT GTCAATGGAATTCACCTCACCTAGCTACCAACCGTCAGCGCCTTCATTCA AGTTGCCGATACAGATGTGACCACCTACTTTATCAACCAATAGCGGAATC CCCACGAATCCCTCCCAAAAAAGAAACACAAAGTTTTATCGGGCACATTG CGATACTACCACTAATCTTAGGTTGAGATTAATGTGTTGTTCTGGACCAG AAAGCCAAATCTGCATGTCTGCAACATGCCTGGACCCCTCAAAGGAGCTG AATCCGGTTAGATGATAATTTCCAAGGTCTTGATCCTAGCATGGATGGCA TGTAGGATGTTGCGACGGATTTGCGTGATAGCGTTGATACTGTGAACTTG AGTCCCGTTTTTGTATTGTAAAAACGTGGGAGCTGTGAATACGTACATTT CTCAAGGGTCAGCACGGACTAACCTGATTCTCCATTCACCCCCCTTTCCA GTACGTACGGAGGAGGAGTGTGCGAATGGTCATCCCTCCGGATCAGTTTG TGTGCCGGCATTCTGGCACACAGGCATGGGCATGAAGGCCAACCCTGATT TCGTCAAACAGGTAGCTCAACATAATCCTTGCCCTTCAGGGAAGAGTTGA TCTGTTGCAGATTTGGAGAGGTGAAAACCAAGTCAATGGTACCACAATTA ATCTCTCTTTCCTTGATTCACACTATCGCCCTCGTTCGGATCCAAATAGT GCTGCAAGTAAACACAGGTTGAGTCACCACCCTCCATTGGTATAGTAGTT GATTACTGTTCGTTACACATCAATACGATTTACACAAGGATTGCAACCAC TAGTCTTCTGGTGTTGCTATCTGTGCCTAATCAATAAGCTGAGAGTGAAC AACAAAAATCTTAGAAGGTGCCACTTTTCACCTCGCCAATGTTAATAACT CAATGTGTAGGTCTCTTGTAGGTCTCTTGTAGCTCTGGACGCTGCCAGGG TAAGTATTTGGTTCCCAGGACAGGCAGTTGCACCTCCTCATTCATGTTTT GTGAAACATGCAGTCCTGGGCCATTGTTTTTAAGTGCAAGCACAATGTCA GAGTTGCAACAACTCTTGTCTGTACAAAAATATCGAATGCATTGATCCTA CAGTATGTGTGGTTTGCAATCTTTGAGTGGTACAAAGGCATTGGATTTGG AGATATTGATGGTAGGATCCTGGAACTCCAAGAAGTGTGCAAGTGCACAG AGTAGTCTTTAGTCGGAATCCATAATGTTTATTCTGTTGTGCAATTTTTA CCACCTCCAAAGAGTTTGTGGTCAAGGTCACATCCTCTTCTATTTGCACT AAGTGTTACAATTTCTGAAAATAAGATCTCACAACCGTGGGTATCCTTCC ACATCTTACAATTCCAAACACGTTGCAACACTTATCTTGTATTGTATGGC TTCAGGTGGAAGGTAAATTCCCAGAGAAAGACACCAGGCTTGTAATAGGG TGCCAAATGGGGTCAAGATCTGCCGCAGCTTGTGAGTGGCTTGAGGAATC TGGGTACACTACTGTATTCAACGTTGTTGGGGGATACAGCTCCTGGGCAC GTGATGAAAGCCTTCCTGTGGAACGTTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10210:589..2467+

>mRNA_C-tenellus_contig10210.1.3 ID=mRNA_C-tenellus_contig10210.1.3|Name=mRNA_C-tenellus_contig10210.1.3|organism=Choristocarpus tenellus KU2346|type=CDS|length=360bp|location=Sequence derived from alignment at C-tenellus_contig10210:589..2467+ (Choristocarpus tenellus KU2346)
ATGATTGAGGAAGTCAGCCCTCAGTTCGCCCACAAATTTGTGCAGGAAGG
CTTCGCTTACATAGATGTACGTACGGAGGAGGAGTGTGCGAATGGTCATC
CCTCCGGATCAGTTTGTGTGCCGGCATTCTGGCACACAGGCATGGGCATG
AAGGCCAACCCTGATTTCGTCAAACAGGTAGCTCAACATAATCCTTGCCC
TTCAGGGAAGAACACCAGGCTTGTAATAGGGTGCCAAATGGGGTCAAGAT
CTGCCGCAGCTTGTGAGTGGCTTGAGGAATCTGGGTACACTACTGTATTC
AACGTTGTTGGGGGATACAGCTCCTGGGCACGTGATGAAAGCCTTCCTGT
GGAACGTTGA
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