mRNA_C-tenellus_contig10208.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10208.1.1
Unique NamemRNA_C-tenellus_contig10208.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10208.1.1 vs. uniprot
Match: A0A6H5L8C4_9PHAE (FAD-binding PCMH-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L8C4_9PHAE)

HSP 1 Score: 332 bits (852), Expect = 7.530e-108
Identity = 162/257 (63.04%), Postives = 190/257 (73.93%), Query Frame = 1 
Query:    1 FTLQLDAKRTAIKVTNSKVSARDLFLEIDSMPAPGGPNPLRDLWSSNYAAEVFYLPASSLKITDPLSNEYENQRWDPLNDTCAIKTFQRTENAVLKTNDGCCGAGAKGYKGFDDTFSLGDFLRIHLGTRVALDLIAKFGDKPSLVAFYSSLTVMALEPTGKSTGKVSYETTLAEAVHWQKYIQQGHPVLDMEAREESHRVCIKCDDDFTSVYKAFHAAVGITKTFAEDRDTLPLNVALEMRFTKHSDSPMSPAYGKE 771
            FTLQLD    AI+VT+SKV ARDLFLE + +P PGGPNPLR+ W+  YA E FYL ASSLK+T+ LS E+E+QRWDP +D C IKTFQRT  AV K ND   G   K    FD  FS+ DFL+++LGT V L L+AKFGDKP+LVAFYS     A EP GK  G+V YE +LA+A+HWQKYI  G+P  D E       VCIKCD DFTS YKA HAA+GITKTFAE+ DTLPLNVA+E+R TKHS+SP+SPAYGKE
Sbjct:  250 FTLQLDGDNKAIRVTDSKVRARDLFLEHNELPKPGGPNPLREAWNGGYAVEAFYLAASSLKVTNILSTEFEDQRWDPYDDICPIKTFQRTNRAVKKDNDNFLGYDQKTSTRFDRNFSISDFLKVNLGTEVGLPLVAKFGDKPALVAFYSRTAAKAFEPVGKEFGQVHYEVSLAQAIHWQKYISDGYPTSDTE-------VCIKCDPDFTSAYKAIHAAIGITKTFAEEEDTLPLNVAMELRMTKHSNSPLSPAYGKE 499
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BLAST of mRNA_C-tenellus_contig10208.1.1 vs. uniprot
Match: A0A6H5JEW1_9PHAE (FAD-binding PCMH-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEW1_9PHAE)

HSP 1 Score: 298 bits (763), Expect = 4.100e-94
Identity = 149/257 (57.98%), Postives = 182/257 (70.82%), Query Frame = 1 
Query:    1 FTLQLDAKRTAIKVTNSKVSARDLFLEIDSMPAPGGPNPLRDLWSSNYAAEVFYLPASSLKITDPLSNEYENQRWDPLNDTCAIKTFQRTENAVLKTNDGCCGAGAKGYKGFDDTFSLGDFLRIHLGTRVALDLIAKFGDKPSLVAFYSSLTVMALEPTGKSTGKVSYETTLAEAVHWQKYIQQGHPVLDMEAREESHRVCIKCDDDFTSVYKAFHAAVGITKTFAEDRDTLPLNVALEMRFTKHSDSPMSPAYGKE 771
            FT QLD+ RTAIKVT+ K  AR+ FLE   +PA G  NPL DLW+ NYA E+FY P+SSL+IT+ LS+E+E+Q WD  +D C +K F RT+NAV K +D   G   K    FD  FS+ DFL+I+LGT+VAL+LI  FG KP+LV+ Y+     A EP  ++TG+VSYET+LA+A+HWQKYI  G PV D E       VCIKCD DFTS YKA H  + I K FAE  DT+PLNVALEMRFTKHSDSP+SP YG E
Sbjct:  261 FTFQLDSARTAIKVTDRKQRARETFLEKGQLPAEGSSNPLLDLWNENYAVEIFYFPSSSLEITNVLSHEFEDQDWDEYDDICTLKIFNRTDNAVGKDDDSFWGKDQKTSTRFDHNFSITDFLKINLGTKVALNLIQNFGAKPALVSLYAKTAAKAFEPVFQTTGEVSYETSLAQAIHWQKYITDGLPVSDTE-------VCIKCDPDFTSAYKAVHETIAIVKKFAEVEDTMPLNVALEMRFTKHSDSPLSPCYGVE 510
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10208.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8C4_9PHAE7.530e-10863.04FAD-binding PCMH-type domain-containing protein n=... [more]
A0A6H5JEW1_9PHAE4.100e-9457.98FAD-binding PCMH-type domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10208contigC-tenellus_contig10208:1045..5494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3R7
PFAMsALO,BBE,FAD_binding_4
Model size771
Max annot lvl2759|Eukaryota
KEGG rclassRC00092,RC00195
KEGG koko:K00225
KEGG ReactionR00640,R07679
KEGG Pathwayko00053,ko01100,ko01110,map00053,map01100,map01110
KEGG ModuleM00114
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.1e-109
EggNOG OGsCOG0277@1|root,KOG4730@2759|Eukaryota
EC1.3.2.3
DescriptionD-arabinono-1,4-lactone oxidase activity
Cds size771
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10208.1.1prot_C-tenellus_contig10208.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10208 1045..5494 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789120.6295145-CDS-C-tenellus_contig10208:1044..11861680789120.6295145-CDS-C-tenellus_contig10208:1044..1186Choristocarpus tenellus KU2346CDSC-tenellus_contig10208 1045..1186 -
1680789120.640449-CDS-C-tenellus_contig10208:1492..15241680789120.640449-CDS-C-tenellus_contig10208:1492..1524Choristocarpus tenellus KU2346CDSC-tenellus_contig10208 1493..1524 -
1680789120.6490471-CDS-C-tenellus_contig10208:2027..22221680789120.6490471-CDS-C-tenellus_contig10208:2027..2222Choristocarpus tenellus KU2346CDSC-tenellus_contig10208 2028..2222 -
1680789120.6584535-CDS-C-tenellus_contig10208:3141..32551680789120.6584535-CDS-C-tenellus_contig10208:3141..3255Choristocarpus tenellus KU2346CDSC-tenellus_contig10208 3142..3255 -
1680789120.6734676-CDS-C-tenellus_contig10208:4748..48361680789120.6734676-CDS-C-tenellus_contig10208:4748..4836Choristocarpus tenellus KU2346CDSC-tenellus_contig10208 4749..4836 -
1680789120.6850982-CDS-C-tenellus_contig10208:5294..54941680789120.6850982-CDS-C-tenellus_contig10208:5294..5494Choristocarpus tenellus KU2346CDSC-tenellus_contig10208 5295..5494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10208.1.1

>prot_C-tenellus_contig10208.1.1 ID=prot_C-tenellus_contig10208.1.1|Name=mRNA_C-tenellus_contig10208.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=257bp
FTLQLDAKRTAIKVTNSKVSARDLFLEIDSMPAPGGPNPLRDLWSSNYAA
EVFYLPASSLKITDPLSNEYENQRWDPLNDTCAIKTFQRTENAVLKTNDG
CCGAGAKGYKGFDDTFSLGDFLRIHLGTRVALDLIAKFGDKPSLVAFYSS
LTVMALEPTGKSTGKVSYETTLAEAVHWQKYIQQGHPVLDMEAREESHRV
CIKCDDDFTSVYKAFHAAVGITKTFAEDRDTLPLNVALEMRFTKHSDSPM
SPAYGKE
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mRNA from alignment at C-tenellus_contig10208:1045..5494-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10208.1.1 ID=mRNA_C-tenellus_contig10208.1.1|Name=mRNA_C-tenellus_contig10208.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4450bp|location=Sequence derived from alignment at C-tenellus_contig10208:1045..5494- (Choristocarpus tenellus KU2346)
TTTACCTTGCAGTTGGATGCCAAGCGTACAGCTATAAAGGTCACTAACTC
CAAGGTCTCTGCCAGGGACTTATTCCTCGAGATAGACTCCATGCCAGCCC
CAGGGGGCCCCAACCCACTGAGAGATTTGTGGAGTAGCAACTATGCGGCC
GAGGTTTTTTACCTACCTGCCTCCAGCCTCAAGATCACAGACCCTCTTAG
GTGAGAGTGTGACTGCTAACATCGTTTCTGTATGCGGTTTTCAACTACTG
GGATAGTCTTGTTCATTGCTGATTTAGGAGAACCTCCCTCTCTTCTGTCT
CTGTGTCGTGAGTGTCGCAAAATGATATCTGTGATGCGATTCAGGGGTTT
GTAATGATATTGCAATATGAATGATACTTGCTAGTGAAACTATTTCTGGG
GTAGTTTTCTGCATTTGCATCGAGTAGAAGGGAGAGAAAGCCTCTCTGTC
TTCATTATTAATAACCATCTCAGGCATCTGAACACACGGTAATTGCTTTT
CGAAGAACTTGTACTTCCTGTATGGCCGACTAGGTTCCTAGCAGTATTTT
TCAACACCATACCTGCTTTCCTGTCATGGTCTCTTTCAGTGTGCAACACA
ACTGCATCTTTATTACTGTATCTTTATTGCTATATATTTATTACTTGCCA
CCTTGCAGCAACGAATACGAAAACCAAAGGTGGGACCCCTTGAATGATAC
CTGTGCTATCAAGACCTTTCAGAGAACAGAGAATGCTGTGCTTAAGGTGA
GAGAGAGGTTTCTTTCAATTTGATTTGAGAGTGCTGCTGAATTGTTGTGT
ACCCCAGAGAACTTCCCATCTGTGCTATGTTGTTGTGCCAAGAACGTTCT
GTGAGTGTGCTCTATATTGATCAGTTACCCAGGAGATCCCTCAATGCTCG
TATGTAAACCATACCTTTCTTTTTTCAAATTTTCCATTTTTTTAAATGCA
TATGAATATGCACATATCTCGAATGTGCTACAATGCACACTGCTATAGAA
ATGTGTCAGTAACACCAGAGTGAAATTATCTTAGAGGGTACGAATTTTTC
CCTGTTTGTCCATTTGTGGGGCTTGGCTTCCCATGTGTTTTTTTATGGCA
TTTTCCGACTCCAAAATGTTTCGGAGTAGGTAAAATGTGTATGTTATGAA
AGGTGTGTCCGAAAGATAGATATTGACACTTCCTAACAAGCACGATAGCC
AAAATTTCATCAAAATCACAACTTTGTATTTTGACCTCCAAATGGACGCG
GCTCTACCCTTTAAGATCCTTTGGCTCACCCGACCGTTAACAATGGCCTT
AGTCTTATTGATATTAAATATAACACACAACCTGTTTTGACTTATACTGT
CATTCCAGGCTTATTTTCCCTCCCTCTGTGTGTAGGTAGAGCCAGTGATG
GATCAACTGGTGTGTTGTTGTGTTGTCAGAGCATTTATGAGATACATTCA
TTGATTGATGTTCTATGACTATTTTTTTTGTTCTATATACACTATGCATA
GTGTGGACAATGATATACCCAACATTCTAGGATTTTAGATTGTTAATGTG
TTGTCTAAACACACATCTGTACAGTCAGAGGAATTGAGGCTGAACTCACA
ATGTAACATATCTTGTGCCAGAACATCATAATTCTGTTGAAGCAAAGGTG
GGTTGTTCAACATACCCCACAATGAAGCTTTCAGCACACACAAGTGGTAG
TACCCGTTTGTCATCAATGAAGTAGGAATGTCCAGTGACCACTCTGAAGT
ACATTGCTGTTTGTTCTTCATACTATAATCCATTGAACAGCTTCAACATA
CACATACCACATACCACATTGAAACACATTGAGGAGATGCCGAGATCTCT
TGGAGACTTGGATGGAATACTGAATTGTGTACATGCACCTTCCCATGAGC
CCAACACAACTATATCAGTAGGTTATCGCCTTACATATGTAAGGATATAT
AACGATAAGCAGCTCACATTATACCGTAATCTGTGGGTGTGATAGAATCT
TCTTCCACCTAGAAATCTTCTGCCCGGTTCCGAGCAACTCCTGTCTATCC
TGTTCCTTCTCTGCTACACTCTATCCAGCATGATCCAGACACTCAAAGTT
GTATGTACCATACATATACTCAGACTGGTTGCTAATAAGAGGCACACTTG
TCACATCATTTTCGTGATATAGCAGCAATTATGACACAATCGTACTATTT
GAAACCTCTTGCCACACTCATGTTCACTTCAAATCAAAGACCAATGATGG
GTGCTGTGGTGCTGGTGCGAAGGGCTATAAAGGATTTGACGACACCTTCA
GCCTGGGTGATTTCCTCAGGATTCACCTTGGCACACGAGTTGCGCTGGAT
CTGGTGAGTGAGAGTTATCCCTTGCCCTGCCACTCAATATTGGTCCTCTA
CTTAAATTAGATAAACTATTCTTGTTCGAGTTTACTGGCTTCTGATGTAG
GAGGTTGAATGTTGGTTTTCCCTTACCCACCATCACACTGTTCCAGGAAA
GAAATATCTATCGAAAAAGGCTTGAGTGCGAATCAAGGGCCTTGCCCACT
ATGCATACGTTCTAGGTCCTTTTATACGTTCTGGAAGCTTTAATTGTTCT
CCGCAGACAATTGAGAGGGATATCAACTCTCTCTGATGAACTTTGTAGTT
GTACAATTCTTACGCATTGCTGAGGGGCAGACTCTCTTTATCGGTGTTGT
AGTAGGGCTCTGGAGATATAGATAGCATGGGAATCATGTTTCAAGGAATA
GCAGATAGTGCCTATCATAGTGAAGAGCATATTTTTGCACGAATATGTTG
TGTGCCAAAGAGAAGGGAGCGACAATTTTTTTTTAGAGTGTAAAAAAAAA
GAAGTCAATTTTGGGTGTTTTCACAATATCGTGCTACCGCTTTGGAGGTG
TTGTCACCTTATGACCCACCAGTGAGTTATTGACCACCAAACATTTTAAC
AGGTACATGTGTTTACGTGCTGGCTTTTTCAGGAGGGGTATCAAGAGGTG
CTGGTATTTAGTGCACCATTGGTGTTGTTGATGTCCTCTGTAATGATGTA
CCTTGGAAGAGTGATGGACCAAGTGGACCCCAAATTTGACCTTCAAGTTC
CTTCTACATTCTGATGATTGTCACTGGCTACTCTTATCCATACCACAGTG
TATGTTGTCTTTTTTAACAGCCCTAACCCTAAATGTGATGGGGCCAACAA
GATAGATCCTCTGCTATCGCAAGTTTGCCACATGATGTTCAACTCAAACA
CCATCCGTGCATGATGGTACAGATAGCCAAATTTGGAGATAAGCCATCGC
TTGTAGCCTTCTACAGCAGCCTGACTGTAATGGCCCTTGAACCAACTGGG
AAGTCCACTGGAAAGGTCTCCTATGAGACCACATTGGCTGAGGCCGTTCA
CTGGCAGAAATACATCCAGCAAGGTCACCCAGTTCTCGACATGGAGGCAA
GAGAAGAGTCACATAGAGTATCATATTTTGTGGGGGGATTGAGATATCTG
AGCTAGACTGCGGTAATATCAATCCAATGGATCGTAAGGTGTAAAAGGGT
GCAGAGGACAAGCCTTACCTTGTTCACTGCCTCACTTCATCTCTTGCACT
GCGTCATTAATTTTGCTTCATCATGCACCCTAAACAAATCCAGTGCACGT
GGTAAACTAGCTAGTAAGAATCAACCAACAAATTGTGACTTACATGAACA
TAATCAATGGTGGATCTCTACCAAATGATACAAAAAATGTTATATGTGAG
GATACAAAAAGTGTTACATGTGAGGATAAGTCGTTGAAACTACAGGACTG
GCGGATTTTGGTTGTAGGAAAGGATTTGAGATTAGGTTTATTGTATATGG
TGGCCAACCTCGACTATTGAATGATCATTCTGTTGTCACCCGCTCAAGAT
CTATCCCATTGTGCTCATATCAACATCAATGTTTTATCTTCCCTTGTAAA
TGTTACTGTGTGTGACGCAGGTGTGCATCAAGTGCGACGATGACTTCACA
AGGTATCTATAATCAGTTGTCACAGGCATATCATGTGATTTTCCGTTCTT
CCATTGTACTCTGCCACACTATAGTATTGAGTGAAGCAATGAACTGAACA
CAATAAGATTTTTCTTGCGGCACAGGGTCTTGAAATATGGATTCCATCAT
CCAGTTGTTCCCATCCCTTATTTTTGAACTCTTCCTACACCACCCACCTC
CCTTGTCCACATACTGGGCTTGACTTCCCTCTTATTTCACTTGACCCTTC
GTGACCTGTCGTGACCCCTTCAAATAAATACGAACACCTACTTAACTGCT
CAATACAGTGTATACAAGGCATTCCATGCAGCTGTCGGCATCACCAAGAC
CTTTGCTGAGGATAGAGACACACTTCCACTCAATGTGGCCCTCGAAATGC
GCTTCACCAAGCACAGTGATAGCCCTATGTCTCCTGCATACGGCAAAGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10208:1045..5494-

>mRNA_C-tenellus_contig10208.1.1 ID=mRNA_C-tenellus_contig10208.1.1|Name=mRNA_C-tenellus_contig10208.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=771bp|location=Sequence derived from alignment at C-tenellus_contig10208:1045..5494- (Choristocarpus tenellus KU2346)
TTTACCTTGCAGTTGGATGCCAAGCGTACAGCTATAAAGGTCACTAACTC
CAAGGTCTCTGCCAGGGACTTATTCCTCGAGATAGACTCCATGCCAGCCC
CAGGGGGCCCCAACCCACTGAGAGATTTGTGGAGTAGCAACTATGCGGCC
GAGGTTTTTTACCTACCTGCCTCCAGCCTCAAGATCACAGACCCTCTTAG
CAACGAATACGAAAACCAAAGGTGGGACCCCTTGAATGATACCTGTGCTA
TCAAGACCTTTCAGAGAACAGAGAATGCTGTGCTTAAGACCAATGATGGG
TGCTGTGGTGCTGGTGCGAAGGGCTATAAAGGATTTGACGACACCTTCAG
CCTGGGTGATTTCCTCAGGATTCACCTTGGCACACGAGTTGCGCTGGATC
TGATAGCCAAATTTGGAGATAAGCCATCGCTTGTAGCCTTCTACAGCAGC
CTGACTGTAATGGCCCTTGAACCAACTGGGAAGTCCACTGGAAAGGTCTC
CTATGAGACCACATTGGCTGAGGCCGTTCACTGGCAGAAATACATCCAGC
AAGGTCACCCAGTTCTCGACATGGAGGCAAGAGAAGAGTCACATAGAGTG
TGCATCAAGTGCGACGATGACTTCACAAGTGTATACAAGGCATTCCATGC
AGCTGTCGGCATCACCAAGACCTTTGCTGAGGATAGAGACACACTTCCAC
TCAATGTGGCCCTCGAAATGCGCTTCACCAAGCACAGTGATAGCCCTATG
TCTCCTGCATACGGCAAAGAG
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