mRNA_C-tenellus_contig10207.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10207.1.1
Unique NamemRNA_C-tenellus_contig10207.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig10207.1.1 vs. uniprot
Match: D8LS34_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS34_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 2.720e-50
Identity = 80/102 (78.43%), Postives = 94/102 (92.16%), Query Frame = 1 
Query:   10 QIYFILVRIKIKHMELAIIRRETAGSGANQYNESETLVKYEVMDGAPAKGECVPLRVFLKPYALTPTYSNIHKFNVKYYLNLVLVDEEDRRYVRVRDIGMDR 315
            +IYF+LVRIKIKHME+AIIRRETAG+G+NQYNESET++KYEVMDGAPAKGECVPLRVFLKPYALTPTY   +KF VKY+LNLVLVDEEDRRY + +++ + R
Sbjct:  193 KIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETIIKYEVMDGAPAKGECVPLRVFLKPYALTPTYRGTNKFTVKYFLNLVLVDEEDRRYFKQQEVTLWR 294
[Close]
BLAST of mRNA_C-tenellus_contig10207.1.1 vs. uniprot
Match: A0A836CB39_9STRA (Vacuolar protein sorting-associated protein 26-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB39_9STRA)

HSP 1 Score: 158 bits (400), Expect = 6.480e-46
Identity = 77/103 (74.76%), Postives = 92/103 (89.32%), Query Frame = 1 
Query:   10 QIYFILVRIKIKHMELAIIRRETAGSGANQYNESETLVKYEVMDGAPAKGECVPLRVFLKPYALTPTYSNIH-KFNVKYYLNLVLVDEEDRRYVRVRDIGMDR 315
            +IYF+LVRIKIKHMELA++RRE AGSGA  YNESET+VKYEVMDGAP KGECVPLR+FLKPY LTPTY +I+ KF+V+YYLNLVLVDEEDRRY + +++ + R
Sbjct:  193 KIYFLLVRIKIKHMELAVVRREAAGSGATVYNESETVVKYEVMDGAPVKGECVPLRLFLKPYDLTPTYKSINNKFSVRYYLNLVLVDEEDRRYFKQQEVVLWR 295
[Close]
BLAST of mRNA_C-tenellus_contig10207.1.1 vs. uniprot
Match: A9UKI2_VERVE (Vacuolar protein sorting protein 26 (Fragment) n=1 Tax=Vermamoeba vermiformis TaxID=5778 RepID=A9UKI2_VERVE)

HSP 1 Score: 147 bits (370), Expect = 1.660e-43
Identity = 69/101 (68.32%), Postives = 88/101 (87.13%), Query Frame = 1 
Query:   10 QIYFILVRIKIKHMELAIIRRETAGSGANQYNESETLVKYEVMDGAPAKGECVPLRVFLKPYALTPTYSNIH-KFNVKYYLNLVLVDEEDRRYVRVRDIGM 309
            +IYF+LVR+KIK+ME+A+I+RE+ GSGAN YNESETL KYE+MDGAP +GE +P+R+FL  + LTPTY NIH KF+VKYYLNLVLVDEEDRRY + ++I +
Sbjct:   28 KIYFLLVRLKIKYMEVAVIKRESTGSGANLYNESETLTKYEIMDGAPVRGESIPIRLFLGAFELTPTYKNIHSKFSVKYYLNLVLVDEEDRRYFKQQEITL 128
[Close]
BLAST of mRNA_C-tenellus_contig10207.1.1 vs. uniprot
Match: A9TQ87_PHYPA (Predicted protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A9TQ87_PHYPA)

HSP 1 Score: 150 bits (380), Expect = 6.380e-43
Identity = 75/106 (70.75%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 LVCQIYFILVRIKIKHMELAIIRRETAGSGANQYNESETLVKYEVMDGAPAKGECVPLRVFLKPYALTPTYSNIH-KFNVKYYLNLVLVDEEDRRYVRVRDIGMDR 315
            +V +IYF+LVRIKIKHMEL I RRE+ GSG N YNESETL KYE+MDGAP +GE +P+R+FL PY LTPTY NI+ KF+VKYYLNLVLVDEEDRRY + ++I M R
Sbjct:  191 IVGKIYFLLVRIKIKHMELEIRRRESTGSGPNTYNESETLAKYEIMDGAPVRGESIPIRLFLSPYDLTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITMYR 296
[Close]
BLAST of mRNA_C-tenellus_contig10207.1.1 vs. uniprot
Match: A9T458_PHYPA (Predicted protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9T458_PHYPA)

HSP 1 Score: 150 bits (380), Expect = 6.380e-43
Identity = 75/106 (70.75%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 LVCQIYFILVRIKIKHMELAIIRRETAGSGANQYNESETLVKYEVMDGAPAKGECVPLRVFLKPYALTPTYSNIH-KFNVKYYLNLVLVDEEDRRYVRVRDIGMDR 315
            +V +IYF+LVRIKIKHMEL I RRE+ GSG N YNESETL KYE+MDGAP +GE +P+R+FL PY LTPTY NI+ KF+VKYYLNLVLVDEEDRRY + ++I M R
Sbjct:  191 IVGKIYFLLVRIKIKHMELEIRRRESTGSGPNTYNESETLAKYEIMDGAPVRGESIPIRLFLSPYDLTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITMYR 296
[Close]
BLAST of mRNA_C-tenellus_contig10207.1.1 vs. uniprot
Match: A0A5B8MFQ9_9CHLO (Hypothetical protein n=2 Tax=Chloropicon TaxID=2302914 RepID=A0A5B8MFQ9_9CHLO)

HSP 1 Score: 150 bits (379), Expect = 9.240e-43
Identity = 72/106 (67.92%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 LVCQIYFILVRIKIKHMELAIIRRETAGSGANQYNESETLVKYEVMDGAPAKGECVPLRVFLKPYALTPTYSNIH-KFNVKYYLNLVLVDEEDRRYVRVRDIGMDR 315
            LV +IYF+LV+IK+KHMEL I RRET GSG+NQYNE++T+ KYEVMDGAP KGEC+P+R+FL  Y LTPTY N++ KF+VKY+LNLVLVDEEDRRY + ++I + R
Sbjct:  191 LVGKIYFLLVQIKLKHMELEIRRRETTGSGSNQYNETQTMAKYEVMDGAPVKGECIPIRLFLSAYDLTPTYKNVNNKFSVKYFLNLVLVDEEDRRYFKQQEIHLFR 296
[Close]
BLAST of mRNA_C-tenellus_contig10207.1.1 vs. uniprot
Match: A0A2R6X8U2_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X8U2_MARPO)

HSP 1 Score: 150 bits (378), Expect = 1.270e-42
Identity = 73/104 (70.19%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:   10 QIYFILVRIKIKHMELAIIRRETAGSGANQYNESETLVKYEVMDGAPAKGECVPLRVFLKPYALTPTYSNIH-KFNVKYYLNLVLVDEEDRRYVRVRDIGMDRL 318
            +IYF+LVRIKIKHMEL I RRE+ GSG N YNE+ETL KYE+MDGAP +GE +P+R+FL PY LTPTY NI+ KF+VKYYLNLVLVDEEDRRY + ++I M R+
Sbjct:  194 KIYFLLVRIKIKHMELEIRRRESTGSGPNTYNETETLAKYEIMDGAPVRGESIPIRLFLSPYDLTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITMMRI 297
[Close]
BLAST of mRNA_C-tenellus_contig10207.1.1 vs. uniprot
Match: L8H8R6_ACACA (Vacuolar protein sortingassociated protein 26, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8R6_ACACA)

HSP 1 Score: 150 bits (380), Expect = 1.700e-42
Identity = 70/103 (67.96%), Postives = 89/103 (86.41%), Query Frame = 1 
Query:   10 QIYFILVRIKIKHMELAIIRRETAGSGANQYNESETLVKYEVMDGAPAKGECVPLRVFLKPYALTPTYSNIH-KFNVKYYLNLVLVDEEDRRYVRVRDIGMDR 315
            +IYF+LVRIKIKHME+AII+RE+ GSG N YNESET+ KYE+MDGAP +GE +P+R+FL P+ LTPTY N+H KF++KYYLNLVLVDEEDRRY + ++I + R
Sbjct:  190 KIYFLLVRIKIKHMEIAIIKRESTGSGPNLYNESETITKYEIMDGAPVRGESIPIRLFLTPFELTPTYRNVHSKFSLKYYLNLVLVDEEDRRYFKQQEIALWR 292
[Close]
BLAST of mRNA_C-tenellus_contig10207.1.1 vs. uniprot
Match: A0A1Y1HWA3_KLENI (Membrane coat complex Retromer n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWA3_KLENI)

HSP 1 Score: 149 bits (377), Expect = 1.800e-42
Identity = 74/107 (69.16%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    1 LVCQIYFILVRIKIKHMELAIIRRETAGSGANQYNESETLVKYEVMDGAPAKGECVPLRVFLKPYALTPTYSNIH-KFNVKYYLNLVLVDEEDRRYVRVRDIGMDRL 318
            +V +IYF+LVRIKIKHMEL I RRE+ GSG N YNESETL KYE+MDGAP +GE +P+R+FL PY LTPTY NI+ KF+VKYY+NLVLVDEE+RRY + ++I M RL
Sbjct:  191 IVGKIYFLLVRIKIKHMELEIRRRESTGSGPNTYNESETLAKYEIMDGAPVRGESIPIRLFLSPYDLTPTYRNINNKFSVKYYINLVLVDEEERRYFKQQEITMLRL 297
[Close]
BLAST of mRNA_C-tenellus_contig10207.1.1 vs. uniprot
Match: A0A453HX39_AEGTS (Uncharacterized protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453HX39_AEGTS)

HSP 1 Score: 143 bits (360), Expect = 1.750e-41
Identity = 72/107 (67.29%), Postives = 89/107 (83.18%), Query Frame = 1 
Query:    1 LVCQIYFILVRIKIKHMELAIIRRETAGSGANQYNESETLVKYEVMDGAPAKGECVPLRVFLKPYALTPTYSNIH-KFNVKYYLNLVLVDEEDRRYVRVRDIGMDRL 318
            +V +IYF+LVRIKIK+MEL I RRE+ GSG N Y E+ETL K+E+MDGAP +GE +P+R+FL PY LTPTY NI+ KF+VKYYLNLVLVDEEDRRY + ++I M RL
Sbjct:   53 IVGKIYFLLVRIKIKNMELEIRRRESTGSGPNTYVETETLAKFELMDGAPVRGESIPVRLFLTPYELTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQEINMFRL 159
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10207.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS34_ECTSI2.720e-5078.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CB39_9STRA6.480e-4674.76Vacuolar protein sorting-associated protein 26-dom... [more]
A9UKI2_VERVE1.660e-4368.32Vacuolar protein sorting protein 26 (Fragment) n=1... [more]
A9TQ87_PHYPA6.380e-4370.75Predicted protein n=3 Tax=Physcomitrium patens Tax... [more]
A9T458_PHYPA6.380e-4370.75Predicted protein n=2 Tax=Physcomitrium patens Tax... [more]
A0A5B8MFQ9_9CHLO9.240e-4367.92Hypothetical protein n=2 Tax=Chloropicon TaxID=230... [more]
A0A2R6X8U2_MARPO1.270e-4270.19Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
L8H8R6_ACACA1.700e-4267.96Vacuolar protein sortingassociated protein 26, put... [more]
A0A1Y1HWA3_KLENI1.800e-4269.16Membrane coat complex Retromer n=1 Tax=Klebsormidi... [more]
A0A453HX39_AEGTS1.750e-4167.29Uncharacterized protein n=2 Tax=Aegilops tauschii ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10207contigC-tenellus_contig10207:3809..4701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LS34
Preferred nameVPS26B
PFAMsVps26
Model size321
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01876,ko:K18466
KEGG ReactionR05577
KEGG Pathwayko00970,ko04144,map00970,map04144
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0002376,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005829,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0008104,GO:0008150,GO:0008565,GO:0009894,GO:0009966,GO:0009987,GO:0010008,GO:0010033,GO:0010506,GO:0010646,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016055,GO:0016192,GO:0016197,GO:0016241,GO:0016482,GO:0016787,GO:0019222,GO:0023051,GO:0023052,GO:0030111,GO:0030139,GO:0030904,GO:0030906,GO:0031090,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034097,GO:0034341,GO:0034613,GO:0042147,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045087,GO:0045184,GO:0045185,GO:0045335,GO:0046907,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0051716,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071346,GO:0071702,GO:0071705,GO:0097422,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:0098876,GO:0198738,GO:1905114,GO:1990126
Exons2
Evalue4.47e-51
EggNOG OGsKOG3063@1|root,KOG3063@2759|Eukaryota
EC6.1.1.12
Descriptionretrograde transport, endosome to Golgi
Cds size321
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789120.5486145-CDS-C-tenellus_contig10207:3808..39721680789120.5486145-CDS-C-tenellus_contig10207:3808..3972Choristocarpus tenellus KU2346CDSC-tenellus_contig10207 3809..3972 -
1680789120.5631769-CDS-C-tenellus_contig10207:4544..47011680789120.5631769-CDS-C-tenellus_contig10207:4544..4701Choristocarpus tenellus KU2346CDSC-tenellus_contig10207 4545..4701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10207.1.1prot_C-tenellus_contig10207.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10207 3809..4701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10207.1.1

>prot_C-tenellus_contig10207.1.1 ID=prot_C-tenellus_contig10207.1.1|Name=mRNA_C-tenellus_contig10207.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=107bp
LVCQIYFILVRIKIKHMELAIIRRETAGSGANQYNESETLVKYEVMDGAP
AKGECVPLRVFLKPYALTPTYSNIHKFNVKYYLNLVLVDEEDRRYVRVRD
IGMDRL*
back to top

mRNA from alignment at C-tenellus_contig10207:3809..4701-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10207.1.1 ID=mRNA_C-tenellus_contig10207.1.1|Name=mRNA_C-tenellus_contig10207.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=893bp|location=Sequence derived from alignment at C-tenellus_contig10207:3809..4701- (Choristocarpus tenellus KU2346)
TTGGTCTGCCAGATCTACTTCATCTTGGTCCGGATCAAGATCAAGCACAT
GGAGCTGGCCATCATCAGACGGGAGACGGCAGGGTCTGGAGCCAACCAGT
ACAATGAGAGTGAGACCCTCGTGAAGTATGAGGTCATGGACGGGGCGCCT
GCAAAAGGTTAGCCGTGTATAATCTGGTGAAGGGTGGAAAAACTTGTGGA
TATTTGATTTGACAGGTTCAGCTTGCTTGCCTTGACCTACTCAACTGTTT
TTTTTCTCTCTCTCTCTCTCTCTCCATATATATATATATATATATATATA
TATAAATTGGGGCAATGAATTTCATGCGTTGTGTCTGGGGTGTAGGGTGG
TGAGTCAGATGTGCTTATAGATACATGTTTGTGTGTATCATTGATATTTC
CTGCCTGATATATATGAAGCAATTATATGACAGAATATGTTTGGGAAAGT
GTAGCTTACCTTTGTTATTGAGTGTAGGGGAGGGGTGGATCATTGCTGTC
TTAGATTGACTGCCAGAAACTAAGATTGATTGTGGGATTTGCCGACACCT
GCTGCAATTTTTCTGTTTCGGGTGTTGCTGGTCGCTACTGTCATAAGCCC
TTGGGAATAATGTTGTACTGCTCACCCACCCCTCTCCCCCCCCCCCAGCC
GCACTGACTGCCATGCTGCCACAATTCTCTGCTGCTTGCTGCTGATGCCT
CAATCGCTACTATTGCTGCACCGTCTAAGGGGAATGTGTCCCCCTCAGAG
TGTTTCTTAAACCTTATGCTCTGACCCCGACATATTCCAACATCCACAAG
TTTAACGTGAAGTACTATCTGAACCTGGTCTTGGTGGACGAGGAAGACCG
GAGGTATGTACGTGTGAGAGATATAGGGATGGATAGATTATAA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10207:3809..4701-

>mRNA_C-tenellus_contig10207.1.1 ID=mRNA_C-tenellus_contig10207.1.1|Name=mRNA_C-tenellus_contig10207.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=321bp|location=Sequence derived from alignment at C-tenellus_contig10207:3809..4701- (Choristocarpus tenellus KU2346)
TTGGTCTGCCAGATCTACTTCATCTTGGTCCGGATCAAGATCAAGCACAT
GGAGCTGGCCATCATCAGACGGGAGACGGCAGGGTCTGGAGCCAACCAGT
ACAATGAGAGTGAGACCCTCGTGAAGTATGAGGTCATGGACGGGGCGCCT
GCAAAAGGGGAATGTGTCCCCCTCAGAGTGTTTCTTAAACCTTATGCTCT
GACCCCGACATATTCCAACATCCACAAGTTTAACGTGAAGTACTATCTGA
ACCTGGTCTTGGTGGACGAGGAAGACCGGAGGTATGTACGTGTGAGAGAT
ATAGGGATGGATAGATTATAA
back to top