mRNA_C-tenellus_contig10163.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10163.3.1
Unique NamemRNA_C-tenellus_contig10163.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10163.3.1 vs. uniprot
Match: D8LBA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBA5_ECTSI)

HSP 1 Score: 422 bits (1084), Expect = 6.470e-141
Identity = 225/315 (71.43%), Postives = 252/315 (80.00%), Query Frame = 1
Query:  256 PIVSWTAMARSNPAPFKPVIKPDPAPLKPATSAISEPTLSGRSPGDHFNGSG-DNDKQWGTGDKPVRPDGGVAGSSRILSSAAGFGVSDGGAEDDDGEGWVNPSNFKAQKAAGIGLNGPLQQQKKGKGGRRRDEQNKCRAGCVTTDFAMQNVLLQVGLQLVSLDGMAIRNVKQWILRCAACFKTCTDMGRLFCPVCGNATLDRVSCSIDAATGAMRVHLRKNHKNNLRGSKFSIPSVSPTKGRFEGDLLLREDQLLSGIWAQKARRTVKDVSSMFGEDVTLNVGLSISKSPDILVGYGRKNPNAAKGRERRGKKG 1197
            P  SW+ MARSNPAPFK   K DPAPL  A       T     P  HF  SG  +       D+P RPDG   G+SRI+S+AA FGVS GGA+DDDGEGWVNPSN K+QKAAGIGLNGP Q Q+KG    R    ++CRAGCVTTDFAMQNV+LQVGL L+SLDGMA+  VKQWILRCAACFKTCT+MGRLFCPVCGNATLDRVSCS++A +GA RVHLRKNHK NLRGSKFSIP+ +P KGRFEGDLLLREDQLLSGIWAQKARR  KDVSSMFGED+T NVGL++SKS D++VGYGRKNPN+A+GRERRGKKG
Sbjct:  240 PTSSWSLMARSNPAPFKVPAKADPAPLPAAXXXXXLDTDD--DPAGHFTTSGVASPGAAAAADRP-RPDGAKPGTSRIMSTAAAFGVSGGGADDDDGEGWVNPSNIKSQKAAGIGLNGPSQTQRKGSHKGRSTVASQCRAGCVTTDFAMQNVILQVGLPLLSLDGMAVHRVKQWILRCAACFKTCTEMGRLFCPVCGNATLDRVSCSVNANSGATRVHLRKNHKVNLRGSKFSIPAANPAKGRFEGDLLLREDQLLSGIWAQKARRKEKDVSSMFGEDITGNVGLTVSKSADLVVGYGRKNPNSARGRERRGKKG 551          
BLAST of mRNA_C-tenellus_contig10163.3.1 vs. uniprot
Match: A0A6H5KFQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ3_9PHAE)

HSP 1 Score: 400 bits (1029), Expect = 1.350e-130
Identity = 217/316 (68.67%), Postives = 244/316 (77.22%), Query Frame = 1
Query:  256 PIVSWTAMARSNPAPFKPVIKPDPAPLKPATSAISEPTLSGRSPGDHFNGSGDNDKQWGTG--DKPVRPDGGVAGSSRILSSAAGFGVSDGGAEDDDGEGWVNPSNFKAQKAAGIGLNGPLQQQKKGKGGRRRDEQNKCRAGCVTTDFAMQNVLLQVGLQLVSLDGMAIRNVKQWILRCAACFKTCTDMGRLFCPVCGNATLDRVSCSIDAATGAMRVHLRKNHKNNLRGSKFSIPSVSPTKGRFEGDLLLREDQLLSGIWAQKARRTVKDVSSMFGEDVTLNVGLSISKSPDILVGYGRKNPNAAKGRERRGKKG 1197
            P  SW+ MARSNPAPFK   K DPAPL    +A + P  +   P  HF  SG       T   D+P RPDG   G+SRI+S+AA FG            GWVNPSN K+QKAAGIGLNGP Q Q+KG    R    ++CRAGCVTTDFAMQNV+LQVGL L+SLDGMA+  VKQWILRCAACFKTCT+MGRLFCPVCGNATLDRVSCS++A +GA RVHLRKNHK NLRGSKFSIP+ +P KGRFEGDLLLREDQLLSGIWAQKARR  KDVSSMFGED+T NVGL++SKS DI+VGYGRKNPN+A+GRERRGKKG
Sbjct:  411 PTSSWSLMARSNPAPFKVPAKADPAPLP---AAAAPPLATDNDPVGHFATSGAASPGAATAAADRP-RPDGATPGTSRIMSTAAAFG------------GWVNPSNIKSQKAAGIGLNGPSQTQRKGIHKGRSKVASQCRAGCVTTDFAMQNVILQVGLPLLSLDGMAVHRVKQWILRCAACFKTCTEMGRLFCPVCGNATLDRVSCSVNANSGATRVHLRKNHKVNLRGSKFSIPAANPAKGRFEGDLLLREDQLLSGIWAQKARRKEKDVSSMFGEDITGNVGLTVSKSADIVVGYGRKNPNSARGRERRGKKG 710          
BLAST of mRNA_C-tenellus_contig10163.3.1 vs. uniprot
Match: A0A835YK00_9STRA (Putative RNA binding protein NOB1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK00_9STRA)

HSP 1 Score: 286 bits (733), Expect = 4.960e-89
Identity = 151/246 (61.38%), Postives = 185/246 (75.20%), Query Frame = 1
Query:  475 SSRILSSAAGFGVSDGGAEDDDGEGWVNPSNFKAQKAAGIGLNGPLQQQK-KGKGGRRRDEQN-----KCRAGCVTTDFAMQNVLLQVGLQLVSLDGMAIRNVKQWILRCAACFKTCTDMGRLFCPVCGNATLDRVSCSIDAATGAMRVHLRKNHKNNLRGSKFSIPSVSPTKGRFEGDLLLREDQLLSGIWAQKARRTVKDVSSMFGEDVTLNVGLSISK-SPDILVGYGRKNPNAAKGRERRGK 1191
            SSRIL+ ++  GV+   A +DDG GWV P+NF   K+ G+ L+GP    K KG   RRR  ++     +CRAGCVTTDFAMQNVLLQ+GL L+S++GMA+R VK W+LRCAACFKT TDM +LFCPVCGN+TLD+VSCS+D ATG MR+HL    K NLRG+K+SIP      GRF GDLLLREDQL+SGIWAQK++RTVK    MFGE +   VGLS+ K S  ++VGYGRKNPN+ +GRERRGK
Sbjct:  238 SSRILNISSSTGVTSVDAAEDDGIGWVTPANFAEVKSTGLSLSGPAPGGKSKGAKARRRAREDAKALAQCRAGCVTTDFAMQNVLLQMGLPLLSVNGMAVRRVKHWVLRCAACFKTTTDMEKLFCPVCGNSTLDKVSCSVDGATGQMRLHLNPKRKPNLRGTKYSIPKPG-VSGRFNGDLLLREDQLMSGIWAQKSKRTVKSQGCMFGEHIMDGVGLSMGKQSAGVVVGYGRKNPNSQRGRERRGK 482          
BLAST of mRNA_C-tenellus_contig10163.3.1 vs. uniprot
Match: A0A7S3XQN7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQN7_HETAK)

HSP 1 Score: 226 bits (576), Expect = 3.400e-69
Identity = 109/177 (61.58%), Postives = 137/177 (77.40%), Query Frame = 1
Query:  670 AGCVTTDFAMQNVLLQVGLQLVSLDGMAIRNVKQWILRCAACFKTCTDMGRLFCPVCGNATLDRVSCSIDAATGAMRVHLRKNHKNN--LRGSKFSIPSVSPTKGRFEGDLLLREDQLLSGIWAQKARRTVKDVSSMFGEDVTLNVGLSISKSPDILVGYGRKNPNAAKGRERRGKK 1194
            AGC TTDFAMQNVL+Q+GL L+S+DGM +R VKQW+LRC ACFK   DM RLFCP CG  TL +VS S+DA TG  ++HLRK  +      G+++S+P+     GRF+G+LLLREDQL  GIW QKA RT K+VSS FGED+T N G++++K+PDI+VG+GR+NPN  KGRERRGKK
Sbjct:   27 AGCATTDFAMQNVLVQIGLPLLSVDGMVVRRVKQWVLRCHACFKLTHDMTRLFCPTCGGPTLQKVSVSLDARTGRAKLHLRKKGRRPPAQAGARYSLPAPGKA-GRFQGELLLREDQLKMGIWQQKANRTKKNVSSAFGEDITQNFGMNVNKAPDIVVGFGRRNPNQMKGRERRGKK 202          
BLAST of mRNA_C-tenellus_contig10163.3.1 vs. uniprot
Match: A0A6G0W830_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W830_9STRA)

HSP 1 Score: 230 bits (586), Expect = 1.980e-67
Identity = 127/240 (52.92%), Postives = 159/240 (66.25%), Query Frame = 1
Query:  478 SRILSSAAGFGV-SDGGAEDDDGEGWVNPSNFKAQKAAGIGLNGPLQQQKKGKGGRRRDEQNKCRAGCVTTDFAMQNVLLQVGLQLVSLDGMAIRNVKQWILRCAACFKTCTDMGRLFCPVCGNATLDRVSCSIDAATGAMRVHLRKNHKNNLRGSKFSIPSVSPTKGRFEGDLLLREDQLLSGIWAQKARRTVKDVSSMFGEDVTLNVGLSISKSPDILVGYGRKNPNAAKGRERRGKK 1194
            SRILS  AGF   S+ GAEDDDG+ WVN +N      +  G N  +           +   +  + GC+TTD++MQNVLLQ+GL L+S DGM I  VKQWIL+CAACFKT T++ R FCPVCGN TL+R+SCS+D  T  + ++ R N    LRGSKFS+P   PT GR  GDLLLREDQL+ GIWAQ+ + + K + S FGE V  ++G+   K   I VG+GR NPNA KGRERRGKK
Sbjct:  235 SRILS--AGFNAASNAGAEDDDGKNWVNAANQAEYSQSPFGSNKEV-----------KAIDSTIQVGCITTDYSMQNVLLQMGLHLISTDGMVINRVKQWILKCAACFKTTTELTRQFCPVCGNHTLERISCSLDKDTEQLTLYTRANRPMKLRGSKFSLPM--PTGGR-NGDLLLREDQLMHGIWAQRQKSSAKVLKSAFGEHVAHDLGVKAEKQTSITVGFGRMNPNAQKGRERRGKK 458          
BLAST of mRNA_C-tenellus_contig10163.3.1 vs. uniprot
Match: A0A1W0A030_9STRA (RNA-binding protein NOB1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A030_9STRA)

HSP 1 Score: 229 bits (584), Expect = 5.410e-67
Identity = 123/240 (51.25%), Postives = 161/240 (67.08%), Query Frame = 1
Query:  478 SRILSSAAGFGVS-DGGAEDDDGEGWVNPSNFKAQKAAGIGLNGPLQQQKKGKGGRRRDEQNKCRAGCVTTDFAMQNVLLQVGLQLVSLDGMAIRNVKQWILRCAACFKTCTDMGRLFCPVCGNATLDRVSCSIDAATGAMRVHLRKNHKNNLRGSKFSIPSVSPTKGRFEGDLLLREDQLLSGIWAQKARRTVKDVSSMFGEDVTLNVGLSISKSPDILVGYGRKNPNAAKGRERRGKK 1194
            SRILS  AGF  S + GA+DDDG+ WVN  N     ++  G    + Q          DE+ K   GC+TTD++MQNV+LQ+GL L+S DGM I+ VKQW+L+CAAC+KT T++ R FCPVCGNATL+RV+CS+D  T  + ++ R N    LRG+KFS+P     KG  +GD+LLREDQLL GIW Q+ + + K + S FGE V  ++G+ + K   I +GYGR NPNA KGRERRGKK
Sbjct:  250 SRILS--AGFAASSNAGADDDDGKNWVNVENSTQYTSSPFGTGTSVDQV---------DEKTK--VGCITTDYSMQNVMLQMGLNLLSTDGMVIKRVKQWVLKCAACYKTTTELTRQFCPVCGNATLERVACSLDKDTEQLTLYTRANRPTKLRGTKFSLPMP---KGGRQGDILLREDQLLHGIWGQRQKASSKVMKSAFGEHVAHDLGVKVEKQTSITIGYGRMNPNAQKGRERRGKK 473          
BLAST of mRNA_C-tenellus_contig10163.3.1 vs. uniprot
Match: A0A067BW92_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BW92_SAPPC)

HSP 1 Score: 226 bits (576), Expect = 4.080e-66
Identity = 123/243 (50.62%), Postives = 161/243 (66.26%), Query Frame = 1
Query:  478 SRILSSAAGFGV-SDGGAEDDDGEGWVNPSNFKAQKAAGIGLNGPLQQQKKGKGGRRRDEQNKCRAGCVTTDFAMQNVLLQVGLQLVSLDGMAIRNVKQWILRCAACFKTCTDMGRLFCPVCGNATLDRVSCSIDAATGAMRVHLRKNHKNNLRGSKFSIPSVSPTKGRFEGDLLLREDQLLSGIWAQKARRTVKDVSSMFGEDVTLNVGLSISKSPDILVGYGRKNPNAAKGRERRGKKGSG 1203
            SRILS  AGF   S+ GA+DDDG+ WVN  N      +  G    +++          DE  K   GC+TTD++MQNV+LQ+GL L+S DGM I+ VKQW+L+C ACFKT T++ R FCPVCGNATL+RV+CS+D  T  + ++ R N    LRG+KFS+P+    KG  +GDLLLREDQL+ GIW Q+ + + K + S FGE V  ++G+ + K   I +GYGR NPNA KGRERRGKK  G
Sbjct:  220 SRILS--AGFAAQSNVGADDDDGKNWVNVENATQFTTSPFGTGTAVEKV---------DENMK--VGCITTDYSMQNVMLQMGLHLLSTDGMVIKRVKQWVLKCVACFKTTTELERQFCPVCGNATLERVACSLDKETEQLTLYTRANRPTKLRGTKFSLPAP---KGGRQGDLLLREDQLMHGIWGQRQKASSKVMKSAFGEHVAHDLGVKVEKQTSITIGYGRMNPNAQKGRERRGKKKRG 446          
BLAST of mRNA_C-tenellus_contig10163.3.1 vs. uniprot
Match: W4FU81_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FU81_9STRA)

HSP 1 Score: 227 bits (578), Expect = 4.380e-66
Identity = 127/240 (52.92%), Postives = 162/240 (67.50%), Query Frame = 1
Query:  478 SRILSSAAGFGVS-DGGAEDDDGEGWVNPSNFKAQKAAGIGLNGPLQQQKKGKGGRRRDEQNKCRAGCVTTDFAMQNVLLQVGLQLVSLDGMAIRNVKQWILRCAACFKTCTDMGRLFCPVCGNATLDRVSCSIDAATGAMRVHLRKNHKNNLRGSKFSIPSVSPTKGRFEGDLLLREDQLLSGIWAQKARRTVKDVSSMFGEDVTLNVGLSISKSPDILVGYGRKNPNAAKGRERRGKK 1194
            SRILS  AGFG S + GAE DDG+ WV+  N KA+       +G L Q           + N  + GC+TTD++MQNVLLQ+GL L+S DGM I  VKQW+L+CAAC+KT T++ R FCPVCGN T++R++CS+D  T  + ++ R N   NLRGSKFS+P   PT GR  GDLLLREDQL+ GIWAQ+ + + K + S FGE V  ++G+   K   I VGYGR NPN+ KGRERRGKK
Sbjct:  249 SRILS--AGFGASTNAGAEGDDGKNWVHNDN-KAEYTHSPFGSGKLTQA---------IDANVVQVGCITTDYSMQNVLLQMGLHLISTDGMVINRVKQWVLKCAACYKTTTELDRQFCPVCGNNTMERIACSLDKDTEQLTLYTRANRPANLRGSKFSLPM--PTGGR-SGDLLLREDQLMHGIWAQRQKSSAKVLKSAFGEHVAHDLGVKAEKQTTITVGYGRMNPNSQKGRERRGKK 473          
BLAST of mRNA_C-tenellus_contig10163.3.1 vs. uniprot
Match: A0A1V9Z2B6_9STRA (RNA-binding protein NOB1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z2B6_9STRA)

HSP 1 Score: 225 bits (574), Expect = 7.480e-66
Identity = 121/241 (50.21%), Postives = 159/241 (65.98%), Query Frame = 1
Query:  478 SRILSSAAGFGVS-DGGAEDDDGEGWVNPSNFKAQKAAGIGLNGPLQQQKKGKGGRRRDE-QNKCRAGCVTTDFAMQNVLLQVGLQLVSLDGMAIRNVKQWILRCAACFKTCTDMGRLFCPVCGNATLDRVSCSIDAATGAMRVHLRKNHKNNLRGSKFSIPSVSPTKGRFEGDLLLREDQLLSGIWAQKARRTVKDVSSMFGEDVTLNVGLSISKSPDILVGYGRKNPNAAKGRERRGKK 1194
            SRILS  AGF  S + GA+DDDG+ WVN  N      +  G             G   D+  +  + GC+TTD++MQNV+LQ+GL L+S DGM I+ VKQW+L+C ACFKT T++ R FCPVCGNATL+RV+CS+D  T  + ++ R N    LRG+KFS+P     KG  +GDLLLREDQL+ GIW Q+ + + K + S FGE V  ++G+ + K  +I +GYGR NPNA KGRERRGKK
Sbjct:  217 SRILS--AGFAASSNAGADDDDGKNWVNAENSTQFTTSPFGT------------GTATDKVDDTMKVGCITTDYSMQNVMLQMGLHLLSTDGMVIKRVKQWVLKCVACFKTTTELDRQFCPVCGNATLERVACSLDKETEQLTLYTRANRPTKLRGTKFSLPMP---KGGRQGDLLLREDQLMHGIWGQRQKASSKVMKSAFGEHVAHDLGVKVEKQTNITIGYGRMNPNAQKGRERRGKK 440          
BLAST of mRNA_C-tenellus_contig10163.3.1 vs. uniprot
Match: A0A024U277_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U277_9STRA)

HSP 1 Score: 224 bits (570), Expect = 5.330e-65
Identity = 126/247 (51.01%), Postives = 161/247 (65.18%), Query Frame = 1
Query:  478 SRILSSAAGFGVS-DGGAEDDDGEGWVNPSNFK--AQKAAGIG-----LNGPLQQQKKGKGGRRRDEQNKCRAGCVTTDFAMQNVLLQVGLQLVSLDGMAIRNVKQWILRCAACFKTCTDMGRLFCPVCGNATLDRVSCSIDAATGAMRVHLRKNHKNNLRGSKFSIPSVSPTKGRFEGDLLLREDQLLSGIWAQKARRTVKDVSSMFGEDVTLNVGLSISKSPDILVGYGRKNPNAAKGRERRGKK 1194
            SRILS  AGFG S + GA+ DDG+ W+N +N    AQ   G G     ++  +Q                   GC+TTD++MQNVL+Q+GL L+S DGM I  VKQWIL+CAACFKT T++ R FCPVCGN  ++R++CS+D  T  + ++ R N   NLRGSKFS+P   PT GR +GDLLLREDQL+ GIWAQ+ + + K + S FGE V  ++G+   K   I VGYGR NPNA KGRERRGKK
Sbjct:  241 SRILS--AGFGASTNAGADGDDGKNWINSTNMAEFAQSPFGSGKLTHAIDASIQ------------------VGCITTDYSMQNVLVQMGLHLLSTDGMVIHRVKQWILKCAACFKTTTELDRKFCPVCGNNLMERIACSLDKDTEQLTLYTRANRPANLRGSKFSLPM--PTGGR-QGDLLLREDQLMHGIWAQRQKTSAKVLKSAFGEHVAHDLGVKAEKQTAITVGYGRMNPNAQKGRERRGKK 464          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10163.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBA5_ECTSI6.470e-14171.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFQ3_9PHAE1.350e-13068.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YK00_9STRA4.960e-8961.38Putative RNA binding protein NOB1 n=1 Tax=Tribonem... [more]
A0A7S3XQN7_HETAK3.400e-6961.58Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6G0W830_9STRA1.980e-6752.92Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1W0A030_9STRA5.410e-6751.25RNA-binding protein NOB1 n=1 Tax=Thraustotheca cla... [more]
A0A067BW92_SAPPC4.080e-6650.62Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
W4FU81_9STRA4.380e-6652.92Uncharacterized protein n=8 Tax=Aphanomyces astaci... [more]
A0A1V9Z2B6_9STRA7.480e-6650.21RNA-binding protein NOB1 n=1 Tax=Achlya hypogyna T... [more]
A0A024U277_9STRA5.330e-6551.01Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10163contigC-tenellus_contig10163:3263..5654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LBA5
Preferred nameNOB1
PFAMsNOB1_Zn_bind,PIN_6,WRNPLPNID
Model size1209
Max annot lvl2759|Eukaryota
KEGG koko:K10601,ko:K11883
KEGG Pathwayko03008,ko04120,ko04141,map03008,map04120,map04141
KEGG ModuleM00403
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0000469,GO:0000478,GO:0003008,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007600,GO:0007601,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0019843,GO:0022607,GO:0022613,GO:0030490,GO:0030684,GO:0030688,GO:0031974,GO:0031981,GO:0032501,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043248,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050877,GO:0050953,GO:0065003,GO:0070013,GO:0070181,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1990904
Exons3
Evalue1.06e-141
EggNOG OGsCOG1439@1|root,KOG2463@2759|Eukaryota
Ec32 ortholog descriptionNin one binding (NOB1) Zn-ribbon-like
Ec32 orthologEc-27_004620.1
EC2.3.2.27
Descriptioncleavage involved in rRNA processing
Cds size1209
COG categoryK
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03051,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789118.6528256-CDS-C-tenellus_contig10163:3262..34301680789118.6528256-CDS-C-tenellus_contig10163:3262..3430Choristocarpus tenellus KU2346CDSC-tenellus_contig10163 3263..3430 -
1680789118.6714466-CDS-C-tenellus_contig10163:4089..44131680789118.6714466-CDS-C-tenellus_contig10163:4089..4413Choristocarpus tenellus KU2346CDSC-tenellus_contig10163 4090..4413 -
1680789118.685823-CDS-C-tenellus_contig10163:4937..56541680789118.685823-CDS-C-tenellus_contig10163:4937..5654Choristocarpus tenellus KU2346CDSC-tenellus_contig10163 4938..5654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10163.3.1prot_C-tenellus_contig10163.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10163 3263..5654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10163.3.1

>prot_C-tenellus_contig10163.3.1 ID=prot_C-tenellus_contig10163.3.1|Name=mRNA_C-tenellus_contig10163.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=403bp
GGGGGEGESGEVKDWELVGEGEESDDSDDDDWEPEGGENVEPEDTMETTS
SEGVFKATEEEFPALGHAVAPAKCEEASTDPATAVPIVSWTAMARSNPAP
FKPVIKPDPAPLKPATSAISEPTLSGRSPGDHFNGSGDNDKQWGTGDKPV
RPDGGVAGSSRILSSAAGFGVSDGGAEDDDGEGWVNPSNFKAQKAAGIGL
NGPLQQQKKGKGGRRRDEQNKCRAGCVTTDFAMQNVLLQVGLQLVSLDGM
AIRNVKQWILRCAACFKTCTDMGRLFCPVCGNATLDRVSCSIDAATGAMR
VHLRKNHKNNLRGSKFSIPSVSPTKGRFEGDLLLREDQLLSGIWAQKARR
TVKDVSSMFGEDVTLNVGLSISKSPDILVGYGRKNPNAAKGRERRGKKGS
GK*
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mRNA from alignment at C-tenellus_contig10163:3263..5654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10163.3.1 ID=mRNA_C-tenellus_contig10163.3.1|Name=mRNA_C-tenellus_contig10163.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2392bp|location=Sequence derived from alignment at C-tenellus_contig10163:3263..5654- (Choristocarpus tenellus KU2346)
GGGGGGGGGGGGGGGGAGGGGGAGAGTGGTGAGGTCAAGGACTGGGAACT TGTTGGTGAAGGGGAGGAGAGTGATGATAGTGATGATGATGACTGGGAAC CAGAGGGAGGGGAAAATGTAGAGCCTGAGGATACCATGGAGACTACATCC AGTGAGGGTGTTTTTAAAGCAACAGAAGAAGAATTTCCAGCCCTAGGTCA TGCTGTGGCACCAGCCAAGTGTGAAGAGGCCAGCACAGACCCTGCCACTG CTGTGCCGATTGTGTCCTGGACGGCAATGGCACGCAGCAACCCTGCTCCC TTTAAGCCTGTCATCAAGCCAGACCCTGCACCGTTGAAACCTGCTACAAG TGCCATTTCAGAGCCAACCTTATCAGGACGTTCACCTGGAGATCATTTCA ATGGATCTGGGGACAATGACAAGCAGTGGGGGACTGGCGACAAGCCTGTG CGTCCAGATGGTGGAGTGGCTGGGTCCTCACGCATCTTGAGCTCAGCTGC AGGGTTTGGTGTGTCTGATGGGGGTGCGGAGGATGATGATGGGGAGGGCT GGGTAAACCCTTCCAATTTCAAGGCCCAGAAGGCAGCTGGAATAGGCCTG AATGGGCCATTGCAGCAGCAAAAGAAGGGAAAGGGTGGGAGGAGAAGGGA TGAACAGAACAAGTGCCGGGCTGGGTGTGTGACCACAGACTTTGCCATGC AAAATGTGCTGCTACAGGTGAGGGAATGTGTTTTCATGTGAAGTGGAGGG TAAAAGAGCTGGGGGGCGGCGAGGGCATGGTCGGATTTTATGGTACTGTT CTGTTTGTTATCTGTACCAAGGCCGTAATAGGCAAAGTCGGATATCTAGA TTACTCAAATATGGCAAGGGTTGAGGAAGGATGGAAACATCCAACATTCT TGGCAGTCTGTCAACTTGGCTGCATCTACTCACCATGGGATAGCAATAGG CCATTGTAGCTAGTGTTGGGCACTGTGCCTCACCCTGACAGCTCTAAAGT TAAGTTTCGAGTTGTACCCCATAGCACCAGTAGCACCTTGTGACCCCATC TTTCAAGCACTTAGTGTCACTACTGTACAGGATAGTGATACGCCTGTGCA TTGATAGAGTTGAAGTCAGTGGCATCCTGAGTTTGCGGGGGTGGGGGTTC TTCTCATATAGTTAATCCCCTACCGACTTGCCCCCATTTCAACACTTGAT CCCCTTTCCTCTATCCCATCAATTCTGGTACTTGTGACCAGGTGGGACTG CAGCTGGTTTCACTCGATGGGATGGCAATCCGGAATGTGAAGCAATGGAT ACTGCGCTGTGCAGCTTGCTTTAAGACGTGTACAGACATGGGTCGTCTGT TTTGCCCAGTGTGTGGCAATGCTACATTGGATCGTGTCTCATGCTCGATT GACGCGGCTACGGGTGCCATGAGGGTGCACCTCCGTAAGAATCACAAAAA CAATCTTAGAGGGAGCAAGTTTTCCATACCTTCAGTAAGCCCCACCAAGG GCCGGTTCGAGGGGGACCTACTTTTGCGGGAAGATCAGCTCCTGAGTGGC ATCTGGGCCCAGAAGGTGGATGTGTTGACTGTGTAGGACAGAAGAAGAAG TGTTTTGCATCAACATTGATGGGTGTGTTGTTTGGGGTGCCCTGTGTCTG TCTTTTGCTGTTGAAGTGGTACCTTTTTGAACAGTGGAATTGAAGGTTTG TATGATAGTAGGGGCGCTGCTGTCAAAAGACATGTTTTGGGTAGTTTCGG ATAAGGCTACGGTTGAAGTTGTACCACAATACACCTGTCCCCTGAGGACA ACTGGAAGCTGGTTGATACCTGTACAATAATATAGGAGAGGAGAATTTTA GCATGACTGTCACAGAGTTGGTTGAACTGTTTTAACTACAAAGTAAAAAA ACACTGCTTCAGTGCCCTCTTTAGATGCCGTTCTTTACCCTGGAGAGAGT CCCCTGGTAGAAGGTGGGGATCAAATGTCGTATCAACTTGGTTTTGTACC TCACATGGACATTGTGTTGTGGTGTATCCCCCAATGAATGCAAGTGCCGC ATCCACTGCAGAGGATATGATAAGTTGTAAGTACCTGATTGCACACACCA TTACACCTAACATAGATGCCAACATGCACTGCCTTGTGCCTTCACTCTGA CCCAGGGCACCTTCCTAATCTCATAACCCGCCTGTGACTGCCCCCCCCTA CCCTCCTTGTTGGTGCTTCCTCAGGCACGGCGTACGGTGAAGGATGTAAG CTCTATGTTTGGGGAGGATGTGACCCTCAATGTAGGCTTGAGTATCTCCA AGTCCCCTGATATTTTGGTGGGGTACGGTAGGAAGAATCCCAATGCTGCT AAGGGGCGAGAGCGACGAGGCAAGAAGGGATCTGGAAAGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10163:3263..5654-

>mRNA_C-tenellus_contig10163.3.1 ID=mRNA_C-tenellus_contig10163.3.1|Name=mRNA_C-tenellus_contig10163.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1209bp|location=Sequence derived from alignment at C-tenellus_contig10163:3263..5654- (Choristocarpus tenellus KU2346)
GGGGGGGGGGGGGGGGAGGGGGAGAGTGGTGAGGTCAAGGACTGGGAACT
TGTTGGTGAAGGGGAGGAGAGTGATGATAGTGATGATGATGACTGGGAAC
CAGAGGGAGGGGAAAATGTAGAGCCTGAGGATACCATGGAGACTACATCC
AGTGAGGGTGTTTTTAAAGCAACAGAAGAAGAATTTCCAGCCCTAGGTCA
TGCTGTGGCACCAGCCAAGTGTGAAGAGGCCAGCACAGACCCTGCCACTG
CTGTGCCGATTGTGTCCTGGACGGCAATGGCACGCAGCAACCCTGCTCCC
TTTAAGCCTGTCATCAAGCCAGACCCTGCACCGTTGAAACCTGCTACAAG
TGCCATTTCAGAGCCAACCTTATCAGGACGTTCACCTGGAGATCATTTCA
ATGGATCTGGGGACAATGACAAGCAGTGGGGGACTGGCGACAAGCCTGTG
CGTCCAGATGGTGGAGTGGCTGGGTCCTCACGCATCTTGAGCTCAGCTGC
AGGGTTTGGTGTGTCTGATGGGGGTGCGGAGGATGATGATGGGGAGGGCT
GGGTAAACCCTTCCAATTTCAAGGCCCAGAAGGCAGCTGGAATAGGCCTG
AATGGGCCATTGCAGCAGCAAAAGAAGGGAAAGGGTGGGAGGAGAAGGGA
TGAACAGAACAAGTGCCGGGCTGGGTGTGTGACCACAGACTTTGCCATGC
AAAATGTGCTGCTACAGGTGGGACTGCAGCTGGTTTCACTCGATGGGATG
GCAATCCGGAATGTGAAGCAATGGATACTGCGCTGTGCAGCTTGCTTTAA
GACGTGTACAGACATGGGTCGTCTGTTTTGCCCAGTGTGTGGCAATGCTA
CATTGGATCGTGTCTCATGCTCGATTGACGCGGCTACGGGTGCCATGAGG
GTGCACCTCCGTAAGAATCACAAAAACAATCTTAGAGGGAGCAAGTTTTC
CATACCTTCAGTAAGCCCCACCAAGGGCCGGTTCGAGGGGGACCTACTTT
TGCGGGAAGATCAGCTCCTGAGTGGCATCTGGGCCCAGAAGGCACGGCGT
ACGGTGAAGGATGTAAGCTCTATGTTTGGGGAGGATGTGACCCTCAATGT
AGGCTTGAGTATCTCCAAGTCCCCTGATATTTTGGTGGGGTACGGTAGGA
AGAATCCCAATGCTGCTAAGGGGCGAGAGCGACGAGGCAAGAAGGGATCT
GGAAAGTGA
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