mRNA_C-tenellus_contig10152.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10152.1.1
Unique NamemRNA_C-tenellus_contig10152.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10152.1.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 3.480e-46
Identity = 82/165 (49.70%), Postives = 100/165 (60.61%), Query Frame = 1
Query:    4 NARPDSAHSFDGKLGVWRVCAPKTADRTSKNHEKGNV-----------------------YEQDCTLDHVWYSKSYTEELLPAIKTKMPWLQGKQVVIQQDGATPHMGKGNSEILSGAGKTEGWSIRLVTQPSNSPDLNIVDMCFFRSLKCRVMREWFGSVEEMV 429
            NARPD AH FDGK+G+WR+C  +TA R+SK                              YE DCT+D  WY   Y + LLPAIK KMPWL+ K+VV+QQDGA+PH GKGN EIL+ AG   GW + LVTQP+ SPDLNI D+  F SLK RV      S++E+V
Sbjct:  200 NARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_C-tenellus_contig10152.1.1 vs. uniprot
Match: UPI000B8AB67D (uncharacterized protein LOC110800636 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AB67D)

HSP 1 Score: 120 bits (302), Expect = 9.940e-29
Identity = 61/164 (37.20%), Postives = 99/164 (60.37%), Query Frame = 1
Query:   31 FDGKLGVWRVCAPKTADRTSKNHEKGNVYEQDCT-LDHVWYSKSYTEELLPAIKTKMPWLQGKQVVIQQDGATPHMGKGNSEILSGAGKTEGWSIRLVTQPSNSPDLNIVDMCFFRSLKCRVMREWFGSVEEMVKVIKKQYEEYDETILERAWQLLFVVYNQVL 519
            FDGKLG++       A R+SKN E+G +  +  T +      +   +ELLPAI++K PW   K ++IQQD + PH+   ++E L  A + EG++I+L+ QP  SPDLN++D+ FFR+++    +++   VE +VK +K+ YE YD  ++   W  L  V  ++L
Sbjct:  329 FDGKLGIFPFTEEVPAKRSSKNRERGTIEIKAITSVTKEVIRRKIIDELLPAIRSKWPWFASKDILIQQDNSRPHINPNDAEFLDAATQ-EGFNIQLICQPPQSPDLNVLDLGFFRAIQSLQHQKFPRDVEALVKAVKEAYEAYDPKLINYTWLQLQYVMLEIL 491          
BLAST of mRNA_C-tenellus_contig10152.1.1 vs. uniprot
Match: A0A024UI08_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI08_9STRA)

HSP 1 Score: 112 bits (281), Expect = 6.620e-27
Identity = 53/165 (32.12%), Postives = 96/165 (58.18%), Query Frame = 1
Query:   28 SFDGKLGVWRVCAPKTADRTSKNHEKGNVYEQDCTLDHVWYSKSYTEELLPAIKTKMPWLQGKQVVIQQDGATPHMGKGNSEILSGAGKTEGWSIRLVTQPSNSPDLNIVDMCFFRSLKCRVMREWFGSVEEMVKVIKKQYEEYDETILERAWQLLFVVYNQVLR 522
            S+DGK+G W     + A R SKN ++G+   +   +    Y     ++++PAIK++ P  + K + +QQD A PH+   ++ +L+ AG+++GW IRL  QPS SPD+N++D+  F +++         ++EE+V  + K Y++ D  +L++ +  L  V   VL+
Sbjct:   91 SWDGKIGTWPFTMVRPALRNSKNFKRGDAITEPVVVTKEVYRSFLVDKVIPAIKSRWPGRRSKTIWVQQDSARPHVAVDDAPVLA-AGQSDGWDIRLCAQPSQSPDMNVLDLGLFNAIQSLQHHTASYTIEELVLAVSKAYDDLDPLVLDKTFMTLQKVMECVLK 254          
BLAST of mRNA_C-tenellus_contig10152.1.1 vs. uniprot
Match: UPI000B778AD2 (uncharacterized protein LOC110722901 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B778AD2)

HSP 1 Score: 108 bits (270), Expect = 4.960e-26
Identity = 64/181 (35.36%), Postives = 100/181 (55.25%), Query Frame = 1
Query:    1 TNARPDSAHS----FDGKLGVWRVCAPKTADRTSKNHEKGNVY---EQDCTLDHVWYSKSYTEELLPAIKTKMPWLQGKQVVIQQDGATPHMGKGNSEILSGAGKTEGWSIRLVTQPSNSPDLNIVDMCFFRSLKCRVMREWFGSVEEMVKVIKKQYEEYDETILERAWQLLFVVYNQVLR 522
            T+ARP  A +    +DGK G++       A R+SKN EKG +    +Q  T D +   K   EE++PAI+   P    K + IQQD A PH+   + E L  A K +G+ + L+ QP+ SPDLN++D+ FFR+++    +E+  SVEE+V+ +   Y  YD  I+   W     V  ++++
Sbjct:    3 TSARPHIASNGYINWDGKTGMFPFTEQVPAQRSSKNREKGTIETKAKQTITRDII--KKMILEEVMPAIRATWPENSCKTIWIQQDNARPHINIDDPEFLEEANK-DGFDMHLICQPAQSPDLNVLDLGFFRAIQAIQHQEFPESVEELVESVLTSYASYDPRIINMTWLHSMYVMEEIMK 180          
BLAST of mRNA_C-tenellus_contig10152.1.1 vs. uniprot
Match: UPI001D0245D6 (uncharacterized protein LOC123072166 n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D0245D6)

HSP 1 Score: 107 bits (267), Expect = 3.410e-24
Identity = 57/166 (34.34%), Postives = 93/166 (56.02%), Query Frame = 1
Query:   28 SFDGKLGVWRVCAPKTADRTSKNHEKGNVYEQDCTLDHVWYSKSYTEELLPAIKTKMPWLQGKQVV-IQQDGATPHMGKGNSEILSGAGKTEGWSIRLVTQPSNSPDLNIVDMCFFRSLKCRVMREWFGSVEEMVKVIKKQYEEYDETILERAWQLLFVVYNQVLR 522
            +FDGK+G+W       A R S+N E+G +  +   +          E+L+PAI    P    ++ + IQQD ATPH+ K + E+   A +  G  I+L+ QP NSPDLNI+D+CFFRSL+         S+ E+++ ++++Y+ YD   L R++  L     +++R
Sbjct:  137 TFDGKIGIWAFVTESPAQRRSENRERGTLELKSLKVTRDVMRLYMCEKLIPAIHDLWPDEDEERTIFIQQDNATPHL-KPSDEVFRRAVEQTGLDIKLIQQPPNSPDLNILDLCFFRSLQSHTDCRAPQSIRELIEGVEEEYQNYDVNTLARSFVTLQSCMREIMR 301          
BLAST of mRNA_C-tenellus_contig10152.1.1 vs. uniprot
Match: UPI001D0257F7 (uncharacterized protein LOC123043747 n=2 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D0257F7)

HSP 1 Score: 107 bits (267), Expect = 7.900e-24
Identity = 57/166 (34.34%), Postives = 93/166 (56.02%), Query Frame = 1
Query:   28 SFDGKLGVWRVCAPKTADRTSKNHEKGNVYEQDCTLDHVWYSKSYTEELLPAIKTKMPWLQGKQVV-IQQDGATPHMGKGNSEILSGAGKTEGWSIRLVTQPSNSPDLNIVDMCFFRSLKCRVMREWFGSVEEMVKVIKKQYEEYDETILERAWQLLFVVYNQVLR 522
            +FDGK+G+W       A R S+N E+G +  +   +          E+L+PAI    P    ++ + IQQD ATPH+ K + E+   A +  G  I+L+ QP NSPDLNI+D+CFFRSL+         S+ E+++ ++++Y+ YD   L R++  L     +++R
Sbjct:  406 TFDGKIGIWAFVTESPAQRRSENRERGTLELKSLKVTRDVMRLYMCEKLIPAIHDLWPDEDEERTIFIQQDNATPHL-KPSDEVFRRAVEQTGLDIKLIQQPPNSPDLNILDLCFFRSLQSHTDCRAPQSIRELIEGVEEEYQNYDVNTLARSFVTLQSCMREIMR 570          
BLAST of mRNA_C-tenellus_contig10152.1.1 vs. uniprot
Match: A0A6A4Z322_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z322_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.220e-23
Identity = 60/175 (34.29%), Postives = 94/175 (53.71%), Query Frame = 1
Query:    7 ARP--DSAHS--FDGKLGVWRVCAPKTADRTSKNHEKGNVYEQDCTLDHVWYSKSYTEELLPAIKTKMPWLQGKQVVIQQDGATPHMGKGNSEILSGAGKTEGWSIRLVTQPSNSPDLNIVDMCFFRSLKCRVMREWFGSVEEMVKVIKKQYEEYDETILERAWQLLFVVYNQVL 519
            ARP  D A S  +DGK+G W       A R+S+N   G +  +   +    Y K   + ++PAIK K P    + VVIQQD A PH+   ++ ++S A  ++GWS+ L  QP NSPDLN++D+ FFR+++         + +E+V    K +++ D   LER +  L     +V+
Sbjct:  228 ARPRWDDAKSECWDGKIGTWHFTETVPAARSSRNRPAGTLELRPINVTRPIYKKMLIDNVIPAIKAKWPAESSRSVVIQQDNARPHVAPWDAAVVS-ACTSDGWSMSLKCQPPNSPDLNVLDLGFFRAIQSLQQTHHSNTYQEIVDATNKAWDDVDPWSLERNFLTLQCCLREVI 401          
BLAST of mRNA_C-tenellus_contig10152.1.1 vs. uniprot
Match: A0A6A4YXI9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YXI9_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.150e-23
Identity = 52/145 (35.86%), Postives = 85/145 (58.62%), Query Frame = 1
Query:    7 ARP----DSAHSFDGKLGVWRVCAPKTADRTSKNHEKGNVYEQDCTLDHVWYSKSYTEELLPAIKTKMPWLQGKQVVIQQDGATPHMGKGNSEILSGAGKTEGWSIRLVTQPSNSPDLNIVDMCFFRSLKCRVMREWFGSVEEMV 429
            ARP    D+   FDGK+G W       A RTS+N   G +  Q  ++    Y     ++++P IK+K P   G+ V+IQQD A PH+   +S I+  A K+ GW++++V QP NSPDLNI+D+ FFR+++    +    ++++++
Sbjct:  224 ARPRLNDDTGEWFDGKIGTWHFTEKVAAARTSRNRPAGTLETQPVSVTRPVYKAMLIDKVIPTIKSKWPSSAGRNVIIQQDNARPHVPPSDSAIVD-ACKSGGWNMKVVYQPPNSPDLNILDLGFFRAIQSLQEKNHSRNIDDII 367          
BLAST of mRNA_C-tenellus_contig10152.1.1 vs. uniprot
Match: A0A090N4N9_OSTTA (Uncharacterized protein n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090N4N9_OSTTA)

HSP 1 Score: 101 bits (251), Expect = 6.190e-23
Identity = 66/185 (35.68%), Postives = 98/185 (52.97%), Query Frame = 1
Query:    7 ARPDSAHSFDGKLGVWRVCAPKTADRTSKNHEKGNVYEQDCTLDHVWYSKSYTEELLPAIKTKMPWLQGKQVVIQQDGATPHMGKGNSEILSGAGKT-------EGWSIRLVTQPSNSPDLNIVDMCFFRSLKC------RVMREWFGSVEEMVKVIKKQYEEY-DETILERAWQLLFVVYNQVL 519
            ARP     FDG++G++R    K A R SK HE+G+V ++DC ++   + +  TE+L+P I TKM       V +Q DGA PH+     + L+ AGK        +   I+ V QP+NSPD N+ D+CFFRSL        R +     + +E   ++ +QY EY D   L+R W +   V   +L
Sbjct:   37 ARP--CGDFDGRIGMYRCAREKVAQRRSKFHERGDVCDEDCDVEAHMFHELVTEKLIPDIYTKMADFD--IVFVQMDGARPHVKC--MDALNAAGKERKRIDGKQAPMIKFVLQPANSPDTNLNDLCFFRSLSKFVQEHEREIEHSAANKDEFWNLMVEQYHEYHDRERLQRCWVVKTAVTKCIL 215          
BLAST of mRNA_C-tenellus_contig10152.1.1 vs. uniprot
Match: UPI00090141F9 (uncharacterized protein LOC109166493 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI00090141F9)

HSP 1 Score: 99.4 bits (246), Expect = 9.330e-23
Identity = 56/165 (33.94%), Postives = 91/165 (55.15%), Query Frame = 1
Query:   31 FDGKLGVWRVCAPKTADRTSKNHEKGNVYEQDC-TLDHVWYSKSYTEELLPAIKTKMPWLQGKQVVIQQDGATPHMGKGNSEILSGAGKTEGWSIRLVTQPSNSPDLNIVDMCFFRSLKCRVMREWFGSVEEMVKVIKKQYEEYDETILERAWQLLFVVYNQVLR 522
            FDGK+G++     + A R SKN E G +  +   T++     K   + +LPAI+ K P    K + IQQD A PH+   ++E L  A K +G+ I L  QP NSPD+N++D+ FFR+L+   ++E   +V+E+V    K ++E     L   +  L +   +V++
Sbjct:    2 FDGKIGIFSFVYKEAAKRRSKNREAGTLETKPIETVNKEVTKKWLIDYVLPAIRAKWPPSSSKTIFIQQDNAKPHISMNDAEFLEAA-KKDGFDIHLTCQPPNSPDMNVLDLGFFRALQYLQLQEVPRNVDELVAATHKAFDEISIESLSNVFLTLQLYMVEVMK 165          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10152.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE3.480e-4649.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000B8AB67D9.940e-2937.20uncharacterized protein LOC110800636 n=1 Tax=Spina... [more]
A0A024UI08_9STRA6.620e-2732.12Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
UPI000B778AD24.960e-2635.36uncharacterized protein LOC110722901 n=1 Tax=Cheno... [more]
UPI001D0245D63.410e-2434.34uncharacterized protein LOC123072166 n=1 Tax=Triti... [more]
UPI001D0257F77.900e-2434.34uncharacterized protein LOC123043747 n=2 Tax=Triti... [more]
A0A6A4Z322_9STRA2.220e-2334.29Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A4YXI9_9STRA6.150e-2335.86Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A090N4N9_OSTTA6.190e-2335.68Uncharacterized protein n=1 Tax=Ostreococcus tauri... [more]
UPI00090141F99.330e-2333.94uncharacterized protein LOC109166493 n=1 Tax=Ipomo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10152contigC-tenellus_contig10152:3634..4158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog42099.EPrPV00000019361
Model size525
Max annot lvl42099.EPrPV00000019361|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.13e-29
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota,1MJMG@121069|Pythiales
DescriptionSource PGD
Cds size525
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789118.0017796-CDS-C-tenellus_contig10152:3633..41581680789118.0017796-CDS-C-tenellus_contig10152:3633..4158Choristocarpus tenellus KU2346CDSC-tenellus_contig10152 3634..4158 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10152.1.1prot_C-tenellus_contig10152.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10152 3634..4158 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10152.1.1

>prot_C-tenellus_contig10152.1.1 ID=prot_C-tenellus_contig10152.1.1|Name=mRNA_C-tenellus_contig10152.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=175bp
TNARPDSAHSFDGKLGVWRVCAPKTADRTSKNHEKGNVYEQDCTLDHVWY
SKSYTEELLPAIKTKMPWLQGKQVVIQQDGATPHMGKGNSEILSGAGKTE
GWSIRLVTQPSNSPDLNIVDMCFFRSLKCRVMREWFGSVEEMVKVIKKQY
EEYDETILERAWQLLFVVYNQVLR*
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mRNA from alignment at C-tenellus_contig10152:3634..4158-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10152.1.1 ID=mRNA_C-tenellus_contig10152.1.1|Name=mRNA_C-tenellus_contig10152.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=525bp|location=Sequence derived from alignment at C-tenellus_contig10152:3634..4158- (Choristocarpus tenellus KU2346)
ACCAATGCCCGCCCAGATTCGGCTCACAGCTTTGATGGAAAGCTTGGTGT TTGGCGTGTGTGTGCGCCAAAAACGGCAGACAGGACAAGCAAGAACCATG AAAAGGGGAATGTGTATGAGCAGGACTGTACTTTAGACCATGTGTGGTAC AGCAAGTCGTACACGGAGGAGTTACTGCCTGCAATCAAGACCAAGATGCC TTGGTTGCAGGGGAAGCAAGTTGTCATTCAGCAAGACGGTGCCACCCCCC ACATGGGCAAGGGCAACTCAGAAATCTTGTCGGGGGCAGGGAAGACTGAG GGGTGGTCGATTAGGCTTGTGACTCAGCCATCTAACTCCCCCGACCTAAA TATCGTGGACATGTGCTTCTTCAGGTCTTTGAAATGCCGGGTGATGAGGG AGTGGTTTGGGTCTGTCGAGGAGATGGTGAAGGTCATTAAGAAACAGTAT GAGGAGTATGATGAAACCATACTTGAGAGGGCCTGGCAGCTCCTTTTTGT GGTGTACAATCAAGTACTTAGGTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10152:3634..4158-

>mRNA_C-tenellus_contig10152.1.1 ID=mRNA_C-tenellus_contig10152.1.1|Name=mRNA_C-tenellus_contig10152.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=525bp|location=Sequence derived from alignment at C-tenellus_contig10152:3634..4158- (Choristocarpus tenellus KU2346)
ACCAATGCCCGCCCAGATTCGGCTCACAGCTTTGATGGAAAGCTTGGTGT
TTGGCGTGTGTGTGCGCCAAAAACGGCAGACAGGACAAGCAAGAACCATG
AAAAGGGGAATGTGTATGAGCAGGACTGTACTTTAGACCATGTGTGGTAC
AGCAAGTCGTACACGGAGGAGTTACTGCCTGCAATCAAGACCAAGATGCC
TTGGTTGCAGGGGAAGCAAGTTGTCATTCAGCAAGACGGTGCCACCCCCC
ACATGGGCAAGGGCAACTCAGAAATCTTGTCGGGGGCAGGGAAGACTGAG
GGGTGGTCGATTAGGCTTGTGACTCAGCCATCTAACTCCCCCGACCTAAA
TATCGTGGACATGTGCTTCTTCAGGTCTTTGAAATGCCGGGTGATGAGGG
AGTGGTTTGGGTCTGTCGAGGAGATGGTGAAGGTCATTAAGAAACAGTAT
GAGGAGTATGATGAAACCATACTTGAGAGGGCCTGGCAGCTCCTTTTTGT
GGTGTACAATCAAGTACTTAGGTAG
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