mRNA_C-tenellus_contig10148.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10148.1.1
Unique NamemRNA_C-tenellus_contig10148.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10148.1.1 vs. uniprot
Match: A0A7S2UZ78_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ78_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 9.030e-13
Identity = 50/157 (31.85%), Postives = 78/157 (49.68%), Query Frame = 1 
Query:  232 LLAGVGDLLIQVADNVRRTSTGLSIAFLARALGQLLVVACAPPLYRVAQGNTVLVVTLLIQVVLWLWLPHITSVILLYVWFACAGITNAAVDTGVQIQTRRVYKDRAGPWLTGSTFMFAIMGVLAPLTSYVADGIITQTAV--YAGFTCACALVLMP 696
            +L  +G  L  +A     +S  +   F+AR  G +   A +  LY   +  T++ + LL   ++  WLP + +V  L+V F   GI  A +DTG QIQTR+++   AGPWL  +T  F I G L P  +Y+   ++ Q  +  +   T    L L P
Sbjct:   78 VLVALGSTLEDLAARCGTSSVEVGSVFIARGAGAMFGSAVSAKLYTAFKSQTIMALVLLTFAIVLTWLPLVKTVFSLHVSFTLLGICTAVLDTGCQIQTRKLHGVEAGPWLGANTVAFGISGALVPSLAYLTHSLMAQYVILSFVSLTVGALLYLPP 234
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BLAST of mRNA_C-tenellus_contig10148.1.1 vs. uniprot
Match: A0A7S2WSJ7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSJ7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.450e-12
Identity = 50/162 (30.86%), Postives = 86/162 (53.09%), Query Frame = 1 
Query: 1075 GKYTTEMVLMLMIFVGMGVQVATSSFMCTFIEQSDGAVNEGQCSLLLSLFWASMALSRFLAMLSQAKLTTIG-LYRNILMVCFLSSIASGPLVYGAATGSYEEWHVWVSVLLWGVVFGPFLGYIFDMSNRVCQRTEEGAAILILGLQLGASVVPLAVGIMWD 1557
            G Y  E +L +  F  +G +V  SS++  ++E +    ++ + +  L++ W ++ + R L +  Q  L     LY ++       SI  G L     T SY  W  W+ ++L+G   GP +GY++D++NR+   +E G AI++ GL  GAS+VP A   +WD
Sbjct:   65 GTYYVEGLLSVCAFCLIGGKVTVSSYIEDYVEDTSSLPDKDK-TWALAVLWIAITVGRILGLKDQIGLKNKEQLYTHLTAWLICGSI--GMLFMMIWTSSY--WATWLGLILYGFGNGPCVGYVYDLNNRITIPSELGMAIVMFGLNFGASIVPYAAAQLWD 221
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BLAST of mRNA_C-tenellus_contig10148.1.1 vs. uniprot
Match: A0A6V1WBP5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WBP5_HETAK)

HSP 1 Score: 60.1 bits (144), Expect = 5.020e-6
Identity = 40/154 (25.97%), Postives = 82/154 (53.25%), Query Frame = 1 
Query:  232 LLAGVGDLLIQVADNVRRTSTGLSIAFLARALGQLLVVACAPPLYRVAQGNTVLVVTLLIQVVLWLWLPHITSVILLYVWFACAGITNAAVDTGVQIQTRRVYKDRAGPWLTGSTFMFAIMGVLAPLTSYVADGIITQTAVYAGFTCACALVLM 693
            ++ G+   L++  +N+  T+  +S A ++RA+G ++   C+  +  +   + V++ T+++  VL L +P +TS I+  + F   G++    +  VQ  T +V+  +AGPWL  +        ++ P+  Y A G+  Q  + +GFT   A+ L+
Sbjct:   98 IVIGMEVNLVEFGNNIGVTTEKISTALISRAVGSIVGSFCSGKILMMHTPHWVILETVILDAVLLLSVPFLTSEIMFQILFFMFGLSIPVSEAAVQFLTCKVHGVQAGPWLQANNIAMWFATMVVPMVHY-ALGLKHQYFLLSGFTVLVAIALV 250
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10148.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S2UZ78_9STRA9.030e-1331.85Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2WSJ7_9STRA3.450e-1230.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V1WBP5_HETAK5.020e-625.97Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10148contigC-tenellus_contig10148:1455..5661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7719.XP_002122926.1
Preferred nameKIAA1919
PFAMsC6,MFS_1
Model size2527
Max annot lvl33208|Metazoa
KEGG koko:K08175
KEGG TC2.A.1.7
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005215,GO:0005355,GO:0006810,GO:0008150,GO:0008643,GO:0008645,GO:0015144,GO:0015145,GO:0015149,GO:0015749,GO:0022857,GO:0034219,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:1904659
Exons5
Evalue2.97e-06
EggNOG OGs28Z0Q@1|root,2R5UW@2759|Eukaryota,38BCW@33154|Opisthokonta,3BHS8@33208|Metazoa,3D1D3@33213|Bilateria,4846H@7711|Chordata
Descriptionglucose transmembrane transporter activity
Cds size1161
COG categoryS
BRITEko00000,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10148.1.1prot_C-tenellus_contig10148.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10148 2299..4874 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789117.6479986-UTR-C-tenellus_contig10148:1454..17871680789117.6479986-UTR-C-tenellus_contig10148:1454..1787Choristocarpus tenellus KU2346UTRC-tenellus_contig10148 1455..1787 +
1680789117.6632488-UTR-C-tenellus_contig10148:2052..22981680789117.6632488-UTR-C-tenellus_contig10148:2052..2298Choristocarpus tenellus KU2346UTRC-tenellus_contig10148 2053..2298 +
1680789117.72861-UTR-C-tenellus_contig10148:4874..56611680789117.72861-UTR-C-tenellus_contig10148:4874..5661Choristocarpus tenellus KU2346UTRC-tenellus_contig10148 4875..5661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789117.6773863-CDS-C-tenellus_contig10148:2298..23511680789117.6773863-CDS-C-tenellus_contig10148:2298..2351Choristocarpus tenellus KU2346CDSC-tenellus_contig10148 2299..2351 +
1680789117.6855693-CDS-C-tenellus_contig10148:2703..31241680789117.6855693-CDS-C-tenellus_contig10148:2703..3124Choristocarpus tenellus KU2346CDSC-tenellus_contig10148 2704..3124 +
1680789117.6941166-CDS-C-tenellus_contig10148:3483..39141680789117.6941166-CDS-C-tenellus_contig10148:3483..3914Choristocarpus tenellus KU2346CDSC-tenellus_contig10148 3484..3914 +
1680789117.7143083-CDS-C-tenellus_contig10148:4618..48741680789117.7143083-CDS-C-tenellus_contig10148:4618..4874Choristocarpus tenellus KU2346CDSC-tenellus_contig10148 4619..4874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10148.1.1

>prot_C-tenellus_contig10148.1.1 ID=prot_C-tenellus_contig10148.1.1|Name=mRNA_C-tenellus_contig10148.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=387bp
MFAIMGVLAPLTSYVADGIITQTAVYAGFTCACALVLMPYTISDAWSSMY
SPHPKTMPRRKKELTSNGEDGQETDVASLETMSRTARESDIIGSMSNDEL
VEGTSVIKNEDMLLPNQVKTSTSLEEKDAFKAKEIAEQDEESKGSGLMGC
RILLPLLQFLYDLWWGKYTTEMVLMLMIFVGMGVQVATSSFMCTFIEQSD
GAVNEGQCSLLLSLFWASMALSRFLAMLSQAKLTTIGLYRNILMVCFLSS
IASGPLVYGAATGSYEEWHVWVSVLLWGVVFGPFLGYIFDMSNRVCQRTE
EGAAILILGLQLGASVVPLAVGIMWDKGAGPASIPMALSLGMFMVLLIGL
YLPKVNPRVTTPMAVRPHTQGPQLPLHMLYSHRRSS*
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mRNA from alignment at C-tenellus_contig10148:1455..5661+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10148.1.1 ID=mRNA_C-tenellus_contig10148.1.1|Name=mRNA_C-tenellus_contig10148.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4207bp|location=Sequence derived from alignment at C-tenellus_contig10148:1455..5661+ (Choristocarpus tenellus KU2346)
GCAAGTGTCTGGAGGGAGCCTAGAGCTTGCACAGTGCGGAGTAATATTGG
TGATTCGTCATTTTGGCTCACTCTCGTCAATAGGTGTTAAGGAGGGTCCA
AGTCCCTGTAGTGCTGTCCGCCGTTGTTCTTTCACAAGACCCTGTCACTT
GTTACCAGTGACAGATACTCTTTGACCGACTCTACATACCTGACGTACAC
TTTGTCTTTTGCTTGTCCGTCTCGCCTCTCCTTACTCGCAGGGGTCGGTG
ATCTACTTATACAAGTGGCCGATAATGTTAGGAGGACCTCCACAGGGTTA
TCGATTGCCTTTCTGGCAAGGGCACTCGGCCAGGTAAATGACAAACAAAA
TGGTGTATTTTGTAGGATTTAGTAGAATTTGTAATTTTGCCCTGGAGCTC
TGGTTGTACCTCAACCTGTGTTGTCTGTACCCATAGGGGTTGGACAGGTT
TTTCCGCTCTTACCCTGTTCTGAAGAATGGTACAGTCGACTTGGTTTGGC
AAACTTCGTTTGCGTTGGACACCAGAGATATATAATCTAACGATCTTCAT
CCTCATCTCACAGTCAACATCTCCACCCCTGAACCATCTCTTCTGAAGTT
GTTGGTGGTGGCTTGTGCGCCCCCACTTTATCGTGTAGCTCAGGGGAACA
CGGTCTTGGTGGTTACCCTTTTGATACAGGTGGTCCTGTGGCTCTGGCTC
CCGCACATAACGTCAGTGATATTACTCTACGTGTGGTTTGCATGTGCGGG
AATTACAAACGCTGCGGTGGATACGGGGGTACAAATACAAACGAGACGTG
TTTACAAGGACAGGGCTGGACCATGGTTAACTGGCTCCACTTTCATGTTC
GCCATCATGGGGGTCCTGGCGCCTCTGACATCGTATGTTGCAGACGGGTG
AGTAACTGCAAACTGACGTCATGCCACAACCCTGTAGTGTCACGTTACAT
ACGTGCAGTGCGGGTGCTACTACTCTGGGAAGAGTGAAGGACTAGTCTTC
TGGGATAAGAGGCTGCCACTCATATGGCATAGAGCTATATTTGCCTCACA
TCTTGCCTTAACTCAACTCGGCAGTACCGTTACCTGTAAGATAGCTTCTC
AAACTCTTGAATGGATGTCGTGGAGAGAGGTTGTGTAATGCCAGAAGTGT
TTTTTCTATTTCTTCTAATCAGATAATCCCACCCTGTTGCGCTGCACCAT
TTCTGGCCCCCTTTGTTGAACTTTTTTGCCTGCGCTGTTTATTGAGAAGG
ATTATTACTCAAACAGCGGTGTATGCGGGCTTCACCTGTGCTTGTGCACT
GGTCCTTATGCCATACACAATTTCAGATGCATGGAGCAGTATGTACTCAC
CCCACCCTAAAACAATGCCAAGGAGGAAGAAAGAGCTGACCTCAAATGGT
GAAGATGGTCAAGAGACAGATGTTGCCAGCTTAGAGACCATGTCAAGAAC
AGCAAGAGAATCTGATATCATTGGTAGTATGTCGAATGATGAACTTGTGG
AGGGCACCTCTGTCATAAAGAATGAGGATATGCTACTACCTAATCAGGTC
AAAACGTCTACTTCACTTGAAGAAAAAGACGCCTTCAAGGCAAAAGAGAT
AGCAGAGCAAGATGAGGAAAGCAAGGGGAGTGGCCTAATGGGCTGCAGGA
TACTTTTGCCTTTGTTGCAGGTACATTTCAATAACGTGATAATGTTTTGC
CCTCCCGCTTTTGTAGGTGAACAAGGCAAGGGGACCTGGTTTGCAGCAGT
TTGTGCTTGCCACGTGCAGGACCTCATCTACTTTGCCCTGCACAGCATGC
TTTGTCTTAAATGAAAGGAAGATATTCTAAATCAGATGCACTTCAGTATT
TGCATAGATGCTATCGGCTTTTGGAGGGGAGGGGATTGTAATGTGTGCAG
CAATTGCCACCCCCACATGACGCATGCAGAACTAGAACGAATACGGTTCT
GAAGCATTTTTTTTATTCCCTGGCCCCCCCCTTCCTCCTCCCCGACTGTG
CTGAACGGATGATGGATGATGATAAGCAGTTCCTCTACGACCTTTGGTGG
GGGAAGTATACAACTGAAATGGTGCTGATGCTCATGATTTTTGTAGGCAT
GGGTGTCCAAGTGGCAACGAGCTCCTTCATGTGCACCTTCATCGAGCAAA
GTGATGGGGCCGTGAATGAAGGTCAATGCAGTCTTCTCCTCTCGCTGTTC
TGGGCGTCAATGGCGCTATCGCGTTTCCTTGCCATGCTTTCTCAGGCAAA
GCTCACCACTATCGGTTTGTATCGAAATATTCTGATGGTATGCTTCCTCT
CTAGCATTGCATCTGGACCGTTGGTATATGGTGCTGCCACTGGGTCTTAC
GAGGAATGGCATGTGTGGGTAAGCGTTCTCCTGTGGGGGGTCGTATTCGG
ACCTTTTCTAGGTTACATCTTTGACATGTCCAACAGGGTGTGCCAGAGGA
CAGAGGAAGGGTGAGTAAGAATGGGTTGCAATGATATCGGGGGGCTGGTG
TAAGAAAGACGACTTATTTTTTCGCATTCACCCTACTGATTCTACCAAGT
GCTTGCGCTGTTGTGTGCTTACTTCAGAGTGTTCACAATGTTGTTGGAGT
ATCTGTGACAGGTTGTGTCTGAGGGTATCATGTTTGTGCCTGAGGTATCA
TGTTTGTGCCTGAGAGTATCATGTTTATGCCTGAGGGTATCATTTTTGTG
CCTGAGAGTATCATGTTTGTGCCTGAGAGTATTATGTTCATGTATGTGTG
TGGTGTGTGGTGCTTTCTCAATATGGTCGTAGTTTTCTTTGCATCTGATC
CTGCAACTTTGTTATGGAATTTTTCGCACTAGTTTACACTTTGTGATTTG
TATCTATCTGTGAGCACAATGTAACAAACCAAAGCCACAGCAACAGCAAC
ACAAGGGGTAGGGAGTAGGTCGCTTTGTATGTTGTACAGGGGTGTGTGTT
TGTCTTTTACCAATGGTGAATATACTGGAGTTAAATTCACTCTTGTCAAG
TAACAAAAACATAACACCTCCCGACAAGACAAGACATGACTGCAATGACA
GTTACCGCCCTGTCAAGTAAGTATCTCAGATATTTTCAATGCCCCCACCA
AATCTTTCCTGAAACCTGCTTGGCGCTTCCTTCCTGATATCAATCTCCGG
CTGATTGTTTTCAGGGCGGCCATCCTTATTCTGGGACTCCAGCTTGGTGC
ATCTGTGGTTCCCCTCGCTGTTGGCATCATGTGGGACAAAGGGGCTGGTC
CTGCCTCCATTCCCATGGCACTTTCCCTAGGCATGTTTATGGTTCTGTTG
ATTGGACTGTATTTGCCAAAGGTGAATCCAAGAGTGACAACTCCTATGGC
TGTACGGCCACACACCCAAGGGCCACAATTACCGCTTCATATGTTGTATT
CTCACAGAAGATCGAGCTAGCATGATATTGTTCCTCTTCTGACCTCTTAT
TAGTAGACGCTGCGTTGAGAGTGTTGAATGCAGCTTGATTGTTTTTGCTT
GTTTCTAGTTTCAGATACCCAGGTCTAAAGAAGTATACACTTGATTTTAC
ACGCACGCACAGATATATATATACATACATACATTTGTTTAGTATAGCAA
CAAACCTATAGAGTTTTTTTGGCAGGGGACAAGTTCGCCCTCCGGAAGGG
CATGCTGTTTACTGTGGTACTGCTTGAATTTATCCTGACTACCTTTACTG
CAAGTGAATATGACTGAAGCAACCACTCTGTTGCTGTCTTTCACTTCTTG
TTGCATGATAATTACTGCCGTTGGTTAGGCTAATGCAATGGTTAAGGATG
CCCAGTATGCTGAGCACACCGGTGGTATGAATATTGAATTTCTCTTCTTG
GATTGTTAAATAGTTGGATTTGGGTAAAGAGGACAAGTTGATGCCATTAT
CAGCAATCTCTTAGTTGAGGGTGCTGTTTAACATCTTTTTGAAGGTTTAA
GATTTTTGACTGTCAAGGTCAGTTGTTTAGAAAACAAGTTTCTGTAATAA
AGGAAGAATTTGTGTACGTTGGAGTGACTGTACCCCCTCTGTGTCTGCAT
GTGGTGTACCTTTATTTGTTACATACTACGTCAAACTTAGTGTTGCCTGT
TCTGACTTTAGTGTGAGGTGTTTTTTTGGTGCATGTTGAAAAATGTAGAA
TCGATTCTTTCTTCAAAAATAGAAATGTTGAAAAGGGGTCATTTTGACAG
GGGGGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10148:1455..5661+

>mRNA_C-tenellus_contig10148.1.1 ID=mRNA_C-tenellus_contig10148.1.1|Name=mRNA_C-tenellus_contig10148.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1161bp|location=Sequence derived from alignment at C-tenellus_contig10148:1455..5661+ (Choristocarpus tenellus KU2346)
ATGTTCGCCATCATGGGGGTCCTGGCGCCTCTGACATCGTATGTTGCAGA
CGGGATTATTACTCAAACAGCGGTGTATGCGGGCTTCACCTGTGCTTGTG
CACTGGTCCTTATGCCATACACAATTTCAGATGCATGGAGCAGTATGTAC
TCACCCCACCCTAAAACAATGCCAAGGAGGAAGAAAGAGCTGACCTCAAA
TGGTGAAGATGGTCAAGAGACAGATGTTGCCAGCTTAGAGACCATGTCAA
GAACAGCAAGAGAATCTGATATCATTGGTAGTATGTCGAATGATGAACTT
GTGGAGGGCACCTCTGTCATAAAGAATGAGGATATGCTACTACCTAATCA
GGTCAAAACGTCTACTTCACTTGAAGAAAAAGACGCCTTCAAGGCAAAAG
AGATAGCAGAGCAAGATGAGGAAAGCAAGGGGAGTGGCCTAATGGGCTGC
AGGATACTTTTGCCTTTGTTGCAGTTCCTCTACGACCTTTGGTGGGGGAA
GTATACAACTGAAATGGTGCTGATGCTCATGATTTTTGTAGGCATGGGTG
TCCAAGTGGCAACGAGCTCCTTCATGTGCACCTTCATCGAGCAAAGTGAT
GGGGCCGTGAATGAAGGTCAATGCAGTCTTCTCCTCTCGCTGTTCTGGGC
GTCAATGGCGCTATCGCGTTTCCTTGCCATGCTTTCTCAGGCAAAGCTCA
CCACTATCGGTTTGTATCGAAATATTCTGATGGTATGCTTCCTCTCTAGC
ATTGCATCTGGACCGTTGGTATATGGTGCTGCCACTGGGTCTTACGAGGA
ATGGCATGTGTGGGTAAGCGTTCTCCTGTGGGGGGTCGTATTCGGACCTT
TTCTAGGTTACATCTTTGACATGTCCAACAGGGTGTGCCAGAGGACAGAG
GAAGGGGCGGCCATCCTTATTCTGGGACTCCAGCTTGGTGCATCTGTGGT
TCCCCTCGCTGTTGGCATCATGTGGGACAAAGGGGCTGGTCCTGCCTCCA
TTCCCATGGCACTTTCCCTAGGCATGTTTATGGTTCTGTTGATTGGACTG
TATTTGCCAAAGGTGAATCCAAGAGTGACAACTCCTATGGCTGTACGGCC
ACACACCCAAGGGCCACAATTACCGCTTCATATGTTGTATTCTCACAGAA
GATCGAGCTAG
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