mRNA_C-tenellus_contig10140.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10140.1.2
Unique NamemRNA_C-tenellus_contig10140.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10140.1.2 vs. uniprot
Match: D8LDR3_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDR3_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 9.430e-107
Identity = 167/383 (43.60%), Postives = 234/383 (61.10%), Query Frame = 1 
Query:    1 ADKVLVAQLVDTVVPIDIVDGGNCYGGCTREVHAAAHVSGSSTTPGCTLLTTTPFTSNDPGDGTLEVTVYCKDGTGALLAQGRDVCQFEVCVDFAWRSVENALEVGLGQILYDVVITRSTQPRGAHSVHIQLVDEYGDGWAGGSNGRYNSWTLSRVLADGSDIISEGTLPEDHASQTIKECLEDGSYVFSTTANAEWSYDMGWTVCNHIGKAGESVSFTVSNGVCEVTDATPLIVVA---EAVDASESYCTLPAE--------LTCTSLSDGLNLEGVGLYHDGRCGETDLTGCNARTIDNCRFCFYDREAWIATFPGERMPDWEDCPCCVADNVGAVCATAGGGSGGNMETFINIAIGVSCAVAISVCIACSCGTQMVRSVR 1116
            A++VLVA LVD +   DIV  G C  GC R   A AHV+G+     C L T +PF S+ P  G L   +YC+D +G L+ QG   C F+VCVDF+W S +      L          ++ +   A+   I + DEYGDGW GG +G YN+W L+ +  D   + S+GTL ++H S TIKECL DG Y+F+TTA + ++ DMGW +C++ G AGE + FTV NG C+   A  LI  A   E  DA +SYC LPA          TCT+LS G+ ++GVGL++D RC   D +GC AR+I  CR CF+D++ W++ FP  R+PDWE CPCCVAD +G  CA+ GGG G +    I +++G++  +AI+ C++C+ G  +VR +R
Sbjct:   22 AEQVLVASLVDDITYTDIVPSGTCADGCVRYEQAVAHVTGTPDQLDCGLQTVSPFDSSTPEPGLLRALIYCEDSSGTLIEQGTRPCVFDVCVDFSWSSGDXXXXXELTYEFNGTCEVQTCEEPNAYGAVISMTDEYGDGWVGGVDGYYNTWQLTDLTTD--TVWSKGTLADNHESATIKECLADGEYMFNTTATSAFADDMGWGICDNYGAAGEGLKFTVLNGACDGESA-ELIARATAEETSDAGDSYCVLPAPESDVDYRTSTCTALSSGMKIDGVGLFYDDRCNSADYSGCFARSIPACRLCFWDKDLWLSRFPSSRVPDWELCPCCVADTLGIDCASGGGG-GTDEGVIIGVSVGIAGVIAIACCLSCAFGPTIVRFLR 400
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BLAST of mRNA_C-tenellus_contig10140.1.2 vs. uniprot
Match: A0A6H5L5M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M6_9PHAE)

HSP 1 Score: 327 bits (839), Expect = 2.660e-104
Identity = 170/422 (40.28%), Postives = 241/422 (57.11%), Query Frame = 1 
Query:    1 ADKVLVAQLVDTVVPIDIVDGGNCYGGCTREVHAAAHVSGSSTTPGCTLLTTTPFTSNDPGDGTLEVTVYCKDGTGALLAQGRDVCQFEVCVDFAWRSVENALEVGLGQILYDVVITRSTQPRGAHSVHIQL---------------------------------------VDEYGDGWAGGSNGRYNSWTLSRVLADGSDIISEGTLPEDHASQTIKECLEDGSYVFSTTANAEWSYDMGWTVCNHIGKAGESVSFTVSNGVCEVTDATPLIVVA---EAVDASESYCTLPAE--------LTCTSLSDGLNLEGVGLYHDGRCGETDLTGCNARTIDNCRFCFYDREAWIATFPGERMPDWEDCPCCVADNVGAVCATAGGGSGGNMETFINIAIGVSCAVAISVCIACSCGTQMVRSVR 1116
            A+++LVA LVD +   DIV  G C  GC R   A AHV+G+     C L T +PF S+ P  G L   +YC+D +G L+ QG   C F+VCVDF+W S +        ++ Y+V + R ++P   H++++ L                                        DEYGDGW GG +G YN+W L+ +  D   + S+GTL ++H S TIKECL DG Y+F+TTA + ++ DMGW +C++ G AGE + FTV NG C+   A  LI  A   E  DA +SYC LPA          TCT+LS G+ ++GVGL++D RC   D +GC AR+I  CR CF+D++ W++ FP  R+PDWE CPCCVAD +G  CA+ GGG G +    I I++G++  +AI+ C++C+ G  +VR  R
Sbjct:  130 AEQILVASLVDDITYADIVPSGTCADGCVRYEQAVAHVTGTPDQLDCDLQTVSPFDSSTPEPGLLRALIYCEDSSGTLIEQGTRPCVFDVCVDFSWSSGDXXXXX---ELTYEVRVERDSKPSAPHTIYVDLSVAIDPTSTNTNADSCQYNGTCEVQTCEAPNAYGAVISMTDEYGDGWVGGVDGYYNTWQLTDLTTD--TVWSKGTLADNHESATIKECLADGEYMFNTTATSAFADDMGWGICDNYGAAGEGLKFTVLNGACDGESA-ELIARATAEETSDAGDSYCVLPAPESDEDYRTSTCTALSSGMKIDGVGLFYDDRCNSADYSGCFARSIPACRLCFWDKDLWMSRFPNSRVPDWELCPCCVADTLGIDCASGGGG-GTDDGVIIGISVGIAGVIAIACCLSCAFGPTIVRFFR 544
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BLAST of mRNA_C-tenellus_contig10140.1.2 vs. uniprot
Match: A0A6H5KLX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX8_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 7.740e-54
Identity = 133/371 (35.85%), Postives = 169/371 (45.55%), Query Frame = 1 
Query:   31 DTVVPIDIVDGGNCYGGCTR-----EVHAAAHVSGSSTTPGCTLLTTT--PFTSNDPGDGTLEVTVYCKDGTGALLAQGRDVCQFEVCVDFAWRS--------VENALEVGLGQILYDVVITR-----------------------------STQPRGAHSVHIQLVDEYGDGWAGGSNGRYNSWTLSRVLADGSDIISEGTLPEDHASQTIKECLEDGSYVFSTTANAEWSYDMGWTVCNHIGKAGESVSFTVSNGVCEVTDAT----PLIVVAEAVDASESYCTLPAELTCTSLSDGL-NLEG--VGLYHDGRC--GETDLTGCNARTIDNCRFCFYDREAWIATFPGERMPDWEDCPCCVADNVGAVC 984
            D +V  DI  GG C  GC R     EV+AA  V        C L        T  D   G+L V   C +  G LL Q +  C + VCV   W+         VE+A       +L +V +                               S  P G   + I   DEYGDGW GG   R N+WTL+   A  S +++EGTL + H S   K CL+DG Y F TTA+A WS +  W VC   G  G S+ F +SN  C V D++    P   VAE   +   +C LPA+  C  L  G+  + G  VG+Y+D  C  G    TGC    +  CR CF +RE W+A FP ER PDW DCPCCVAD +   C
Sbjct:   61 DAIVAADIEPGGPCDAGCVRTVVNAEVYAAGEVD-------CELRVENLLDHTDEDVLGGSLNVVHSCTNAAGDLLYQDQGECLYSVCVTAEWKGELLTYTVVVEHAEPSAAHTVLIEVYMNEYEDLLDRPDVTVVSDSSVLCELGTSCADSSACPSGYSELVITTTDEYGDGWVGGLPDRSNTWTLTD--ASSSSVVAEGTLHDWHFSGMTKLCLQDGDYSFETTADAAWSSESAWNVCEVDGGMGGSLDFEMSNSACNVLDSSSKDGPPATVAET--SLGDFCALPADDPCVDLDVGVAEVRGPSVGMYYDESCLEGGGGDTGCGGGGVTVCRICFVNREFWLADFPDERYPDWLDCPCCVADALVVTC 420
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10140.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDR3_ECTSI9.430e-10743.60Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L5M6_9PHAE2.660e-10440.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLX8_9PHAE7.740e-5435.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10140contigC-tenellus_contig10140:450..2129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1116
Hectar predicted targeting categoryother localisation
Exons2
Cds size1116
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789117.4445553-CDS-C-tenellus_contig10140:449..11781680789117.4445553-CDS-C-tenellus_contig10140:449..1178Choristocarpus tenellus KU2346CDSC-tenellus_contig10140 450..1178 -
1680789117.4570293-CDS-C-tenellus_contig10140:1742..21291680789117.4570293-CDS-C-tenellus_contig10140:1742..2129Choristocarpus tenellus KU2346CDSC-tenellus_contig10140 1743..2129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10140.1.2prot_C-tenellus_contig10140.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10140 450..2129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10140.1.2

>prot_C-tenellus_contig10140.1.2 ID=prot_C-tenellus_contig10140.1.2|Name=mRNA_C-tenellus_contig10140.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=372bp
ADKVLVAQLVDTVVPIDIVDGGNCYGGCTREVHAAAHVSGSSTTPGCTLL
TTTPFTSNDPGDGTLEVTVYCKDGTGALLAQGRDVCQFEVCVDFAWRSVE
NALEVGLGQILYDVVITRSTQPRGAHSVHIQLVDEYGDGWAGGSNGRYNS
WTLSRVLADGSDIISEGTLPEDHASQTIKECLEDGSYVFSTTANAEWSYD
MGWTVCNHIGKAGESVSFTVSNGVCEVTDATPLIVVAEAVDASESYCTLP
AELTCTSLSDGLNLEGVGLYHDGRCGETDLTGCNARTIDNCRFCFYDREA
WIATFPGERMPDWEDCPCCVADNVGAVCATAGGGSGGNMETFINIAIGVS
CAVAISVCIACSCGTQMVRSVR
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mRNA from alignment at C-tenellus_contig10140:450..2129-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10140.1.2 ID=mRNA_C-tenellus_contig10140.1.2|Name=mRNA_C-tenellus_contig10140.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1680bp|location=Sequence derived from alignment at C-tenellus_contig10140:450..2129- (Choristocarpus tenellus KU2346)
GCCGACAAGGTACTGGTGGCCCAGCTAGTGGATACTGTTGTCCCGATTGA
CATTGTAGACGGAGGAAATTGCTATGGGGGATGCACTCGTGAGGTCCATG
CAGCAGCCCATGTCAGTGGTTCCTCGACGACGCCTGGGTGTACCCTGTTA
ACCACAACCCCCTTTACATCAAATGATCCTGGCGATGGAACTCTAGAAGT
CACCGTTTACTGTAAAGATGGCACAGGGGCGCTGCTCGCGCAGGGACGTG
ACGTGTGTCAATTCGAAGTGTGCGTTGACTTTGCGTGGCGGAGTGTTGAG
AATGCCCTTGAGGTGGGACTTGGACAGATCCTGTACGATGTGGTCATAAC
CCGTTCCACTCAACCCCGCGGGGCTCACAGCGTGCACGTGGACCTCTCCA
TAGATGTGGACCCTACAGCCACTGACGCAGTACAGACTAACTGCCCTAGC
AATGAAACCTGCCCTGTCAAGACGTGCAGCCCGGACTATGCGTTAGATGT
GAGCTATTTCGTCTGCAGTCCCAACGCTGTGACAGACCATATCCGTCTTT
TTCCATACTTTTTGTGCCATCGTGCCTGTAACGGTGTCTCATGAAAAAAT
AGTTGCTTGTGGCAGATGTGGCATTGAATGAGTATCTCATTAGGTTATCG
GTGGATGCTGTGTCGATTTCATGTTTTCAGAAGCATATTTCGTCGTGATT
CATCACGCCCAACGCGTTCACTTGTCCTTTTCAGAGCCGTTCCCACTTGT
AATATTCCTTTACCATTTTCACTTAATTTGTATCGCTTCATTGCTAATGG
ATGCCCATGACATTTCAACTACCATCTCTCTCAGGCCCCATCAAGGGTCT
CCCCTACCCTCGCCACAGGTACCCCCAACCCTCTGCTCATTTTCCTCATC
TATCCTCGGTTTCTTAACTCGTTTCCTCCTGACTCACGAATTACTCACCA
GATTCAACTCGTAGACGAGTACGGCGATGGCTGGGCAGGGGGAAGCAATG
GCCGTTACAACTCCTGGACGCTGTCTCGCGTGCTGGCAGATGGTAGCGAC
ATCATCTCTGAGGGGACCTTACCCGAGGACCATGCCTCACAGACTATCAA
GGAGTGCCTGGAGGACGGCAGTTACGTTTTCTCCACAACAGCCAACGCTG
AATGGTCCTATGATATGGGGTGGACTGTATGCAACCACATTGGCAAGGCT
GGAGAGAGTGTGTCTTTCACAGTGTCGAACGGTGTGTGTGAGGTGACGGA
TGCGACGCCACTGATTGTTGTGGCAGAGGCGGTTGATGCATCTGAATCCT
ACTGCACCCTCCCTGCGGAGCTGACATGCACATCTCTATCGGATGGATTG
AACCTTGAGGGTGTGGGACTGTACCATGACGGGCGGTGTGGAGAAACAGA
CCTGACCGGGTGCAATGCCCGCACCATTGACAACTGCCGTTTTTGCTTTT
ACGACCGTGAGGCATGGATTGCAACATTTCCTGGGGAGCGTATGCCAGAC
TGGGAGGACTGCCCCTGCTGTGTGGCAGACAACGTGGGTGCTGTTTGTGC
GACAGCGGGCGGTGGGAGTGGGGGAAACATGGAGACTTTCATTAACATTG
CCATTGGAGTGTCTTGTGCTGTTGCTATCTCGGTGTGCATAGCATGCTCG
TGTGGCACCCAGATGGTCCGCTCGGTGAGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10140:450..2129-

>mRNA_C-tenellus_contig10140.1.2 ID=mRNA_C-tenellus_contig10140.1.2|Name=mRNA_C-tenellus_contig10140.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=1116bp|location=Sequence derived from alignment at C-tenellus_contig10140:450..2129- (Choristocarpus tenellus KU2346)
GCCGACAAGGTACTGGTGGCCCAGCTAGTGGATACTGTTGTCCCGATTGA
CATTGTAGACGGAGGAAATTGCTATGGGGGATGCACTCGTGAGGTCCATG
CAGCAGCCCATGTCAGTGGTTCCTCGACGACGCCTGGGTGTACCCTGTTA
ACCACAACCCCCTTTACATCAAATGATCCTGGCGATGGAACTCTAGAAGT
CACCGTTTACTGTAAAGATGGCACAGGGGCGCTGCTCGCGCAGGGACGTG
ACGTGTGTCAATTCGAAGTGTGCGTTGACTTTGCGTGGCGGAGTGTTGAG
AATGCCCTTGAGGTGGGACTTGGACAGATCCTGTACGATGTGGTCATAAC
CCGTTCCACTCAACCCCGCGGGGCTCACAGCGTGCACATTCAACTCGTAG
ACGAGTACGGCGATGGCTGGGCAGGGGGAAGCAATGGCCGTTACAACTCC
TGGACGCTGTCTCGCGTGCTGGCAGATGGTAGCGACATCATCTCTGAGGG
GACCTTACCCGAGGACCATGCCTCACAGACTATCAAGGAGTGCCTGGAGG
ACGGCAGTTACGTTTTCTCCACAACAGCCAACGCTGAATGGTCCTATGAT
ATGGGGTGGACTGTATGCAACCACATTGGCAAGGCTGGAGAGAGTGTGTC
TTTCACAGTGTCGAACGGTGTGTGTGAGGTGACGGATGCGACGCCACTGA
TTGTTGTGGCAGAGGCGGTTGATGCATCTGAATCCTACTGCACCCTCCCT
GCGGAGCTGACATGCACATCTCTATCGGATGGATTGAACCTTGAGGGTGT
GGGACTGTACCATGACGGGCGGTGTGGAGAAACAGACCTGACCGGGTGCA
ATGCCCGCACCATTGACAACTGCCGTTTTTGCTTTTACGACCGTGAGGCA
TGGATTGCAACATTTCCTGGGGAGCGTATGCCAGACTGGGAGGACTGCCC
CTGCTGTGTGGCAGACAACGTGGGTGCTGTTTGTGCGACAGCGGGCGGTG
GGAGTGGGGGAAACATGGAGACTTTCATTAACATTGCCATTGGAGTGTCT
TGTGCTGTTGCTATCTCGGTGTGCATAGCATGCTCGTGTGGCACCCAGAT
GGTCCGCTCGGTGAGA
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