mRNA_C-tenellus_contig10138.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10138.2.1
Unique NamemRNA_C-tenellus_contig10138.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10138.2.1 vs. uniprot
Match: D8LN58_ECTSI (Ribonuclease P n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN58_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 2.100e-5
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    4 RWSKMLNKAKPSANDGRPSFFYHFAEEDQKEQLQIFVDWLHQER 135
            R +KML +++    +  P  FY F +EDQKEQLQIFVDWLH +R
Sbjct:  544 RHTKMLARSRQRQGNENP--FYSFTDEDQKEQLQIFVDWLHAQR 585
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10138.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LN58_ECTSI2.100e-554.55Ribonuclease P n=1 Tax=Ectocarpus siliculosus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10138contigC-tenellus_contig10138:5215..5349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LN58
PFAMsDYW_deaminase,Jacalin
Model size135
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.79e-05
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
Cds size120
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789117.2596116-CDS-C-tenellus_contig10138:5214..53341680789117.2596116-CDS-C-tenellus_contig10138:5214..5334Choristocarpus tenellus KU2346CDSC-tenellus_contig10138 5215..5334 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789117.2709403-UTR-C-tenellus_contig10138:5334..53491680789117.2709403-UTR-C-tenellus_contig10138:5334..5349Choristocarpus tenellus KU2346UTRC-tenellus_contig10138 5335..5349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10138.2.1prot_C-tenellus_contig10138.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10138 5215..5334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10138.2.1

>prot_C-tenellus_contig10138.2.1 ID=prot_C-tenellus_contig10138.2.1|Name=mRNA_C-tenellus_contig10138.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=40bp
MLNKAKPSANDGRPSFFYHFAEEDQKEQLQIFVDWLHQER
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mRNA from alignment at C-tenellus_contig10138:5215..5349-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10138.2.1 ID=mRNA_C-tenellus_contig10138.2.1|Name=mRNA_C-tenellus_contig10138.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=135bp|location=Sequence derived from alignment at C-tenellus_contig10138:5215..5349- (Choristocarpus tenellus KU2346)
AACAGGTGGAGCAAGATGCTCAACAAGGCAAAGCCATCCGCTAATGATGG
CAGGCCAAGCTTTTTCTATCATTTTGCAGAGGAGGATCAGAAGGAGCAGC
TACAGATATTCGTAGACTGGTTACATCAGGAAAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10138:5215..5349-

>mRNA_C-tenellus_contig10138.2.1 ID=mRNA_C-tenellus_contig10138.2.1|Name=mRNA_C-tenellus_contig10138.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=120bp|location=Sequence derived from alignment at C-tenellus_contig10138:5215..5349- (Choristocarpus tenellus KU2346)
ATGCTCAACAAGGCAAAGCCATCCGCTAATGATGGCAGGCCAAGCTTTTT
CTATCATTTTGCAGAGGAGGATCAGAAGGAGCAGCTACAGATATTCGTAG
ACTGGTTACATCAGGAAAGG
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