mRNA_C-tenellus_contig10133.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10133.2.1
Unique NamemRNA_C-tenellus_contig10133.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10133.2.1 vs. uniprot
Match: A0A6S9KV36_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KV36_HETAK)

HSP 1 Score: 116 bits (291), Expect = 1.250e-26
Identity = 61/137 (44.53%), Postives = 88/137 (64.23%), Query Frame = 1
Query:  367 ENGGNIAESRMVRMGGDFAVIMRLSMPKEVKGD-LQEKLKDVSNTSMSLHKTSPEEFAKTSTPSFLANFELEGADNPGLIYQVTTFFADRGCRVDKLSSETRGAPFGGTTLFIMKGMVASDEAIDLPTLETSFKELE 774
            EN G+IAES+M++MG DF +++R+S  +  K D  +  +  VS   ++++  +  E ++T  P F ANF+LEGADNPGL+Y VT + A  G  VD + +ET  APFGGT LF+M G   SD+ +D   L   F+ELE
Sbjct:   76 ENEGSIAESKMMKMGNDFCMMLRVSNIQTPKTDSFKSMVSSVSGMKVTVYPAT--EVSETFVPQFQANFKLEGADNPGLVYAVTNYLAKFGIWVDDIHTETASAPFGGTQLFVMTGKATSDQPVDAAALRAGFRELE 210          
BLAST of mRNA_C-tenellus_contig10133.2.1 vs. uniprot
Match: W7TYX5_9STRA (Glycine cleavage system regulatory protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYX5_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.390e-25
Identity = 64/159 (40.25%), Postives = 94/159 (59.12%), Query Frame = 1
Query:  322 HFTLLGRYPDCPGCQ--------ENGGNIAESRMVRMGGDFAVIMRLSMPKEVKGDLQEKLKDVSNTSMSLHKTSPEEFAKT-STPSFLANFELEGADNPGLIYQVTTFFADRGCRVDKLSSETRGAPFGGTTLFIMKGMVASDEAIDLPTLETSFKEL 771
            HF L    PD  G          +N G+I ESRM+RMG DF+++MR++ PK     + +KL  V   S+  H  + E   +    P++ ANF +EG ++PGL+Y+VT  F  RG RV+KL ++T+ APFGGT LF+M G + SD+ ID   L+ + + L
Sbjct:   93 HFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPIDFADLKEASESL 251          
BLAST of mRNA_C-tenellus_contig10133.2.1 vs. uniprot
Match: A0A7S2UU75_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU75_9STRA)

HSP 1 Score: 108 bits (269), Expect = 9.800e-24
Identity = 61/163 (37.42%), Postives = 91/163 (55.83%), Query Frame = 1
Query:  322 HFTLLGRYPDCPGCQ--------ENGGNIAESRMVRMGGDFAVIMRLSMPKE---VKGDLQEKLKDVSNTSMSLHKTSPEEFAKTST-PSFLANFELEGADNPGLIYQVTTFFADRGCRVDKLSSETRGAPFGGTTLFIMKGMVASDEAIDLPTLETSFKELE 774
            H  +    PD PG          +  G+IAES+ VRMGGDF ++MR+   +       DL+  L  V N ++ L + SP++F    T P    +F LEGAD+PG++  VT+F  D+G  +++L +E + APFGGT LF+M G  +S+ + +   L   FK LE
Sbjct:   32 HLIITASGPDRPGIVADFTKAVLDQNGSIAESKAVRMGGDFCIMMRILANQSGVTQMEDLKRSLSSVPNMAVDLREASPDKFGSLGTEPVCKTSFTLEGADHPGIVNAVTSFLCDKGFSIEELHTEAKSAPFGGTMLFLMNGKASSNVSQNFDELREGFKVLE 194          
BLAST of mRNA_C-tenellus_contig10133.2.1 vs. uniprot
Match: A0A7S2JMD8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Cyanoptyche gloeocystis TaxID=77922 RepID=A0A7S2JMD8_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 3.110e-16
Identity = 42/117 (35.90%), Postives = 71/117 (60.68%), Query Frame = 1
Query:  367 ENGGNIAESRMVRMGGDFAVIMRLSMPKEVKGDLQEKLKDVSNTSMSLHKTSPEEFAKTSTPSFLANFELEGADNPGLIYQVTTFFADRGCRVDKLSSETRGAPFGGTTLFIMKGMV 717
            +N GN+ +S M R+ G FA ++ +S+P      L++ +  ++  + S+ + +P E  +        N E++GADNPGL+  VT++F+ RG  ++K+ +    APFGGTTLF MK +V
Sbjct:   32 DNEGNVEDSAMARLAGSFATVILVSLPPTRVSGLRDSVTKINGLTSSVLEATPAEPVRRK----FRNVEMKGADNPGLLRTVTSYFSQRGINIEKMETWCEDAPFGGTTLFNMKALV 144          
BLAST of mRNA_C-tenellus_contig10133.2.1 vs. uniprot
Match: A0A1Y1IKX5_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IKX5_KLENI)

HSP 1 Score: 88.6 bits (218), Expect = 8.610e-16
Identity = 53/157 (33.76%), Postives = 77/157 (49.04%), Query Frame = 1
Query:  346 PDCPGCQ--------ENGGNIAESRMVRMGGDFAVIMRLSMPKEVKG---DLQEKLKDVSNTSMSLHKTSPEEFAKTSTPSFLANFELEGADNPGLIYQVTTFFADRGCRVDKLSSETRGAPFGGTTLFIMKGMVASDEAIDLPTLETSFKELEVTI 783
            PD PG          E GGN+ ESRM R+ GDF+++M +++   V     +++  L D+    +    TS +               L GADNPGL+Y VT + A     ++ L + T  APFGGTTLF+M G+VA    I    L +    L+ T+
Sbjct:  103 PDRPGIVSRLSKRLLELGGNVEESRMARLAGDFSILMLVTVDATVPSRAEEIRSSLSDIEGLHVFTRWTSEDPSYLKKLQKRFRRISLRGADNPGLVYNVTEYLASLHVNIESLETGTEEAPFGGTTLFMMDGIVAIPPDISTARLASDLDALQTTL 259          
BLAST of mRNA_C-tenellus_contig10133.2.1 vs. uniprot
Match: A0A518GYY0_9BACT (Glycine cleavage system transcriptional repressor n=1 Tax=Tautonia plasticadhaerens TaxID=2527974 RepID=A0A518GYY0_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 3.450e-15
Identity = 43/118 (36.44%), Postives = 71/118 (60.17%), Query Frame = 1
Query:  367 ENGGNIAESRMVRMGGDFAVIMRLSMPKEVKGDLQEKLKDVSNTSMSLHKTSPEEFAKTSTPSFLA-NFELEGADNPGLIYQVTTFFADRGCRVDKLSSETRGAPFGGTTLFIMKGMV 717
            E GGN+  SRM R+GG+FAV+M +SMP++    L   L ++      +  T  +     + P ++  + E+EGAD+ G+I++V +  + RG  ++++ +ET  APFGG TLF M  +V
Sbjct:   27 ERGGNVESSRMARLGGEFAVLMLVSMPEDQISGLDSGLDELFLRGYRITTTPTDRPVVEARPGWVTYHIEVEGADHEGIIHRVASHLSARGISIEEMETETASAPFGGVTLFNMSALV 144          
BLAST of mRNA_C-tenellus_contig10133.2.1 vs. uniprot
Match: A0A832HRW9_9BACT (ACT domain-containing protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A832HRW9_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 3.790e-15
Identity = 53/165 (32.12%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  328 TLLGRYPDCPGCQE--------NGGNIAESRMVRMGGDFAVIMRLSMPKEVKGDLQEKLKDVSNTSMSLHKTSPEEFAKTSTPSFLANFELEGADNPGLIYQVTTFFADRGCRVDKLSSETRGAPFGGTTLFIMKGMVASDEAIDLPTLETSFKELEVTIPHHVS 798
            T++G  PD PG  E        +GGN  ESRM R+GG FA I+R+ +P E +  L  +LK +S+  +S+   SP+  A T+  +     EL G D PG++ ++    A  G  V++L +E   AP  G  LF  K ++++  A D+  L    +++   +   +S
Sbjct:    8 TVIG--PDRPGLVEAVARLVAAHGGNWLESRMARLGGQFAGILRIELPAERQNQLMAELKALSSEGLSVV-ASPDRPAGTAGHTRKLVIELVGQDRPGIVREIAAALAAHGVNVEELQTECASAPMSGEPLFKAKALLSAPAACDINRLRAELEKIAADLIVDIS 169          
BLAST of mRNA_C-tenellus_contig10133.2.1 vs. uniprot
Match: A0A0E3YW72_9BACT (Glycine cleavage system protein R n=1 Tax=Verrucomicrobia bacterium IMCC26134 TaxID=1637999 RepID=A0A0E3YW72_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 1.440e-14
Identity = 51/156 (32.69%), Postives = 85/156 (54.49%), Query Frame = 1
Query:  328 TLLGRYPDCPGC--------QENGGNIAESRMVRMGGDFAVIMRLSMPKEVKGDLQEKLKDVSNTSMSLHKTSPEEFAKTSTPSFLANFELEGADNPGLIYQVTTFFADRGCRVDKLSSETRGAPFGGTTLFIMKGMVASDEAIDLPTLETSFKEL 771
            +L+GR  D PG          E+GGN  ESR+ R+GG+FA I+R+ + +     L   L+ V+   +++H    EE A  +TP+  A  +L G+D PG++ +V+   A  G  V+ L++E   AP GG  +F+M+ +VA     +L  +    ++L
Sbjct:    8 SLIGR--DQPGLVRNVASVIAEHGGNWLESRLCRLGGEFAGIVRVEVERVKAVGLTAALQAVAGLRVAVH---AEEGAAVATPAVTAALDLVGSDRPGILREVSAVLAAHGLNVEDLATERVEAPMGGGKIFLMRALVAVPSGAELSRVRADLEKL 158          
BLAST of mRNA_C-tenellus_contig10133.2.1 vs. uniprot
Match: A0A7S0GHT8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHT8_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.470e-14
Identity = 47/129 (36.43%), Postives = 73/129 (56.59%), Query Frame = 1
Query:  337 GRYPDCPGCQENGG-NIAESRMVRMGGDFAVIMRLSMPKE-VKGDLQEKLKDVSNTSMSLHKTS-PEEFAKTSTPSFLANFELEGADNPGLIYQVTTFFADRGCRVDKLSSETRGAPFGGTTLFIMKGM 714
            G   D  G  +  G NI ESR V++G  F+V+M +S PKE     L E+LK +   +++  +TS P+         +   F+L GADNPG++Y+VT+  +     ++ L + +  APFGGT LF M+G+
Sbjct:   45 GIVSDMTGVMDKAGCNIGESRAVKLGNHFSVMMLVSAPKEETTSSLTEQLKVIDGLTITTFETSDPKAIEVNPQTGWSGQFKLSGADNPGIVYKVTSVLSKNRLSIESLLTTSEDAPFGGTKLFKMEGV 173          
BLAST of mRNA_C-tenellus_contig10133.2.1 vs. uniprot
Match: L0DQL7_SINAD (Glycine cleavage system regulatory protein n=2 Tax=Singulisphaera TaxID=466152 RepID=L0DQL7_SINAD)

HSP 1 Score: 79.3 bits (194), Expect = 1.070e-13
Identity = 44/138 (31.88%), Postives = 74/138 (53.62%), Query Frame = 1
Query:  373 GGNIAESRMVRMGGDFAVIMRLSMPKEVKGDLQEKLKDVSNTSMSLHKTSPEEFAKTSTPSFLA-NFELEGADNPGLIYQVTTFFADRGCRVDKLSSETRGAPFGGTTLFIMKGMVASDEAIDLPTLETSFKELEVTI 783
            GGN+  SRMVR+GG+FAV+M +S+P E    L   L  ++     +  T  E       P +L    E++GAD+ G+I++V+ + +  G  ++ + SET  AP  G+ LF M   V    ++ +P  E   +++ V +
Sbjct:   29 GGNVTTSRMVRLGGEFAVLMLVSLPSEPFDGLDVDLASLTAQGYKITTTVAEHPHAEVPPGWLPYRIEVQGADHEGIIHEVSQYLSQNGVNIESIDSETTPAPTTGSPLFAMTAHVVIPPSLSVPDWEAGLEKIGVRL 166          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10133.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S9KV36_HETAK1.250e-2644.53Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
W7TYX5_9STRA2.390e-2540.25Glycine cleavage system regulatory protein n=2 Tax... [more]
A0A7S2UU75_9STRA9.800e-2437.42Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2JMD8_9EUKA3.110e-1635.90Hypothetical protein (Fragment) n=1 Tax=Cyanoptych... [more]
A0A1Y1IKX5_KLENI8.610e-1633.76Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A518GYY0_9BACT3.450e-1536.44Glycine cleavage system transcriptional repressor ... [more]
A0A832HRW9_9BACT3.790e-1532.12ACT domain-containing protein n=1 Tax=Verrucomicro... [more]
A0A0E3YW72_9BACT1.440e-1432.69Glycine cleavage system protein R n=1 Tax=Verrucom... [more]
A0A7S0GHT8_9STRA6.470e-1436.43Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
L0DQL7_SINAD1.070e-1331.88Glycine cleavage system regulatory protein n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10133contigC-tenellus_contig10133:3196..5112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr45408
PFAMsACT_6
Model size1329
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.99e-12
EggNOG OGsCOG2716@1|root,2SBEX@2759|Eukaryota,2XCTW@2836|Bacillariophyta
DescriptionACT domain
Cds size408
COG categoryE
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789116.9835703-UTR-C-tenellus_contig10133:3195..35911680789116.9835703-UTR-C-tenellus_contig10133:3195..3591Choristocarpus tenellus KU2346UTRC-tenellus_contig10133 3196..3591 +
1680789117.0306826-UTR-C-tenellus_contig10133:4587..51121680789117.0306826-UTR-C-tenellus_contig10133:4587..5112Choristocarpus tenellus KU2346UTRC-tenellus_contig10133 4588..5112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789116.9958067-CDS-C-tenellus_contig10133:3591..36541680789116.9958067-CDS-C-tenellus_contig10133:3591..3654Choristocarpus tenellus KU2346CDSC-tenellus_contig10133 3592..3654 +
1680789117.0042298-CDS-C-tenellus_contig10133:3733..39421680789117.0042298-CDS-C-tenellus_contig10133:3733..3942Choristocarpus tenellus KU2346CDSC-tenellus_contig10133 3734..3942 +
1680789117.0139868-CDS-C-tenellus_contig10133:4451..45871680789117.0139868-CDS-C-tenellus_contig10133:4451..4587Choristocarpus tenellus KU2346CDSC-tenellus_contig10133 4452..4587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10133.2.1prot_C-tenellus_contig10133.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10133 3592..4587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10133.2.1

>prot_C-tenellus_contig10133.2.1 ID=prot_C-tenellus_contig10133.2.1|Name=mRNA_C-tenellus_contig10133.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=136bp
MVRMGGDFAVIMRLSMPKEVKGDLQEKLKDVSNTSMSLHKTSPEEFAKTS
TPSFLANFELEGADNPGLIYQVTTFFADRGCRVDKLSSETRGAPFGGTTL
FIMKGMVASDEAIDLPTLETSFKELEVTIPHHVSR*
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mRNA from alignment at C-tenellus_contig10133:3196..5112+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10133.2.1 ID=mRNA_C-tenellus_contig10133.2.1|Name=mRNA_C-tenellus_contig10133.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1917bp|location=Sequence derived from alignment at C-tenellus_contig10133:3196..5112+ (Choristocarpus tenellus KU2346)
CCTCTCCATACCAGCATTACATCCTGAATGCCTTTGGTCCTGATCGTGTA GGCATCGTCTCAGAACTCAGCAAGGTCGTGCTTGGTGAGAGGTTCACAGA ATCAGCAAGTTTTGCACTGTTCGTATTGACAACACCTTCCTTGTCCATCT ACAAGGGACTCACCTCCACGCGCGTAGTTGCCAAATGAAACGTTCAATAA TGTACTATGTGATATTCCACGCGCATGCGCAATCTGATCTCTATGACTTT GTTGTACACTTCTGGCACACGCACACTGTTCCCTTCCCTCTCCCTATACT AGCTAGAGGACCTAATATTATCACTTTACCCTCCTTGGACGATACCCTGA TTGCCCTGGTTGCCAAGAAAATGGCGGCAACATTGCTGAAAGTCGAATGG TCCGTATGGGTGGAGACTTCGCCGTGATTATGCGACTGAGCATGCCGAAG GAGGTCAAGGTCAGTACATCAAGAGTATCAGCTATCCTTGAGGTTTTTTA TAACTGAAATACTCGATCCTTGTCACTCTTCTGAGCAGGGTGATCTGCAA GAGAAGCTGAAGGACGTGAGCAACACGAGCATGTCTCTCCACAAGACTTC ACCTGAAGAGTTCGCCAAAACCTCTACCCCTTCTTTCTTGGCCAACTTTG AACTGGAGGGAGCAGATAATCCGGGACTAATCTACCAGGTTACAACATTC TTTGCAGACAGAGGGTGCCGAGTGGACAAGCTTAGTTCTGAGACGAGGTG GGTGCAAGGCACTGATCGTTTATATAGGATGGATTGTGTAGTGCAGCAAA TCATAAGCCCTGCCTTTTTGTGTTGGTAAGAAGGTGTGCTATGTAGCAAA TGAATACTTGTGTATAGAAGTACATATATTAATAGAGCTCTCTAAACGTT ACAGTTAGCTCGATTTGAGAGTTCTCTGAAAGAGATCAGACTTCTGGTTT CGTTAGTCATTATCACTATACGCCACATATTCTCAAGAACCAAGATAAAT TTCGACGGAATACAGTCATGCTCTGAGTGCACGTAATTGACACTCAATAA ACATTGTTGAACAAGTAGACTAGACAAGAAGACAGTGGCAAGTCATATAT TTTTAAAGGGGTACTCACTGGATTCCTCCCCCATAGAACGTAGGACCTAT ATCAAGACTGGCACATGTTATAATCGGTATCACACACTTCCAGGTGCACT CACGACCATCCTTGTTTGTATTTGTTACTATGCACGTTTCGTTGGATGGG GAGAAGGGGAGCACCCTTTGGCGGTACTACCCTCTTTATCATGAAAGGAA TGGTAGCGAGCGATGAAGCAATTGACCTGCCAACACTCGAGACAAGTTTC AAGGAACTCGAGGTAACTATCCCCCACCACGTCTCAAGATAACCTGACTG CTTCATTCATTATTAAAAAAGGAATAGAAAATATGTGTTGCTTCTCTATT GCCTTTTCCTCTTGAGTGCACTAACCCCAAGTTTTGTCCCATGCCACTGA GTCCGCATAAACATTCAGAACTCCCTCAACACAATGCTGTCAACGTAGGT TTCCATGAAGTAGGATACAACAATAACAAAGTTTGGTTTAGCTTCGTGGT GTTTAAAGTGAACTTGTAGATATTAAAGATGCACCAGTTCCGTTATCTGA TTGTACGGAGCTGCCTATAATAATGATCAATACGGAGTACATACTCACAA TAGGCGAGGAAGCGTGCACACCCTGGCACTCTTTCTGGGATTGACTACGA CTATAATTGAAGAATAAGGAGTGTCAATGCGATAACCTGAAATGCATTGC TCCCTGCAACCTTCACGTGGCGTTTGTACATATGAGCTCATATGTAGCCA ATGAATACTACCCATACACAACTTGCAATCGGGATTGAATTTTCATGGGG ACTTGGTTGTAACCTAC
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Coding sequence (CDS) from alignment at C-tenellus_contig10133:3196..5112+

>mRNA_C-tenellus_contig10133.2.1 ID=mRNA_C-tenellus_contig10133.2.1|Name=mRNA_C-tenellus_contig10133.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=408bp|location=Sequence derived from alignment at C-tenellus_contig10133:3196..5112+ (Choristocarpus tenellus KU2346)
ATGGTCCGTATGGGTGGAGACTTCGCCGTGATTATGCGACTGAGCATGCC
GAAGGAGGTCAAGGGTGATCTGCAAGAGAAGCTGAAGGACGTGAGCAACA
CGAGCATGTCTCTCCACAAGACTTCACCTGAAGAGTTCGCCAAAACCTCT
ACCCCTTCTTTCTTGGCCAACTTTGAACTGGAGGGAGCAGATAATCCGGG
ACTAATCTACCAGGTTACAACATTCTTTGCAGACAGAGGGTGCCGAGTGG
ACAAGCTTAGTTCTGAGACGAGGGGAGCACCCTTTGGCGGTACTACCCTC
TTTATCATGAAAGGAATGGTAGCGAGCGATGAAGCAATTGACCTGCCAAC
ACTCGAGACAAGTTTCAAGGAACTCGAGGTAACTATCCCCCACCACGTCT
CAAGATAA
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