mRNA_C-tenellus_contig10132.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10132.3.1
Unique NamemRNA_C-tenellus_contig10132.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10132.3.1 vs. uniprot
Match: D8LS95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS95_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 4.800e-32
Identity = 62/109 (56.88%), Postives = 78/109 (71.56%), Query Frame = 1 
Query:    1 WSRMPSGKGILGTLGAAVGLTAANILTLSRGTFEV-APSPLQLVSAAILIGSWAALVEVCVPSPQKTLPYDSFPLALDDNAVLPVLSALGAAGIFHMLGLGECQLGSWV 324
            WSR+ +GKG+LG LG A  LT AN   L++  FE  AP+  ++V A  +I +WAA VEV VPSPQKTLP + FPLA DDNA LPVL A+GAA +F +LGLG C+L  W+
Sbjct:  193 WSRVGTGKGLLGALGCATALTLANSFVLAKARFESGAPTLRRIVLAGGMIAAWAAAVEVSVPSPQKTLPCEGFPLAFDDNAALPVLGAMGAAVVFRVLGLGSCELRPWL 301
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BLAST of mRNA_C-tenellus_contig10132.3.1 vs. uniprot
Match: A0A7S0U658_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U658_HEMAN)

HSP 1 Score: 68.9 bits (167), Expect = 2.290e-11
Identity = 43/97 (44.33%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:    7 RMPSGKGILGTLGAAVGLTAANILTLSR-GTFEVAPSPLQLVSAAILIGSWAALVEVCVPSPQKTLPYDSFPLALDDNAVLPVLSALGAAGIFHMLG 294
            R+  GK + GTLG  +  +A +   L+  G    AP  L L+ A  L+G   A+VE+ VPSP   LP+ SFPL LDDN +LPV+S+LGA   + +LG
Sbjct:  296 RLLHGKSLAGTLGFFLCTSALSYFVLAAAGATLTAPLALALILAPALMG---AIVELVVPSPNLVLPFKSFPLGLDDNFMLPVMSSLGAHIAWKLLG 389
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BLAST of mRNA_C-tenellus_contig10132.3.1 vs. uniprot
Match: A0A7S0W7F8_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W7F8_9CRYP)

HSP 1 Score: 63.2 bits (152), Expect = 9.820e-10
Identity = 41/97 (42.27%), Postives = 53/97 (54.64%), Query Frame = 1 
Query:    7 RMPSGKGILGTLGAAVGLTAANILTLSR-GTFEVAPSPLQLVSAAILIGSWAALVEVCVPSPQKTLPYDSFPLALDDNAVLPVLSALGAAGIFHMLG 294
            R+  GK + GTLG        + L L+  G     P    L+ A  ++G   A+VE+ VPSP   LP+  FPL LDDN +LPVLSALGA   +  LG
Sbjct:  114 RLLHGKSLAGTLGFLACTALLSYLVLAAAGAVLTGPLVASLIVAPAIMG---AVVELVVPSPNLVLPFKKFPLGLDDNFMLPVLSALGAHIAWKALG 207
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10132.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LS95_ECTSI4.800e-3256.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0U658_HEMAN2.290e-1144.33Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7S0W7F8_9CRYP9.820e-1042.27Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10132contigC-tenellus_contig10132:5260..5592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LS95
Model size333
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue9.11e-30
EggNOG OGs2E1KA@1|root,2S8X1@2759|Eukaryota
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789116.9316247-CDS-C-tenellus_contig10132:5259..55831680789116.9316247-CDS-C-tenellus_contig10132:5259..5583Choristocarpus tenellus KU2346CDSC-tenellus_contig10132 5260..5583 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789116.9427223-UTR-C-tenellus_contig10132:5583..55921680789116.9427223-UTR-C-tenellus_contig10132:5583..5592Choristocarpus tenellus KU2346UTRC-tenellus_contig10132 5584..5592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10132.3.1prot_C-tenellus_contig10132.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10132 5260..5583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10132.3.1

>prot_C-tenellus_contig10132.3.1 ID=prot_C-tenellus_contig10132.3.1|Name=mRNA_C-tenellus_contig10132.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=108bp
MPSGKGILGTLGAAVGLTAANILTLSRGTFEVAPSPLQLVSAAILIGSWA
ALVEVCVPSPQKTLPYDSFPLALDDNAVLPVLSALGAAGIFHMLGLGECQ
LGSWVLW*
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mRNA from alignment at C-tenellus_contig10132:5260..5592-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10132.3.1 ID=mRNA_C-tenellus_contig10132.3.1|Name=mRNA_C-tenellus_contig10132.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=333bp|location=Sequence derived from alignment at C-tenellus_contig10132:5260..5592- (Choristocarpus tenellus KU2346)
TGGTCTCGAATGCCGTCTGGGAAAGGCATACTTGGGACCCTTGGTGCAGC
AGTGGGACTAACAGCTGCTAATATCCTTACTTTGTCGCGAGGGACCTTTG
AGGTTGCCCCTTCCCCACTGCAGCTGGTGTCAGCGGCAATTCTGATTGGC
TCCTGGGCTGCGTTGGTGGAGGTCTGTGTGCCGAGTCCGCAAAAGACTCT
TCCGTACGATTCATTTCCCTTGGCATTAGATGACAACGCAGTGCTGCCAG
TGCTATCAGCTCTAGGAGCTGCTGGTATCTTCCACATGCTTGGGCTTGGG
GAGTGCCAGTTGGGATCGTGGGTGCTGTGGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10132:5260..5592-

>mRNA_C-tenellus_contig10132.3.1 ID=mRNA_C-tenellus_contig10132.3.1|Name=mRNA_C-tenellus_contig10132.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=324bp|location=Sequence derived from alignment at C-tenellus_contig10132:5260..5592- (Choristocarpus tenellus KU2346)
ATGCCGTCTGGGAAAGGCATACTTGGGACCCTTGGTGCAGCAGTGGGACT
AACAGCTGCTAATATCCTTACTTTGTCGCGAGGGACCTTTGAGGTTGCCC
CTTCCCCACTGCAGCTGGTGTCAGCGGCAATTCTGATTGGCTCCTGGGCT
GCGTTGGTGGAGGTCTGTGTGCCGAGTCCGCAAAAGACTCTTCCGTACGA
TTCATTTCCCTTGGCATTAGATGACAACGCAGTGCTGCCAGTGCTATCAG
CTCTAGGAGCTGCTGGTATCTTCCACATGCTTGGGCTTGGGGAGTGCCAG
TTGGGATCGTGGGTGCTGTGGTGA
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