mRNA_C-tenellus_contig10131.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10131.3.1
Unique NamemRNA_C-tenellus_contig10131.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10131.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10131contigC-tenellus_contig10131:4091..4663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size575
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789116.8352637-CDS-C-tenellus_contig10131:4090..44171680789116.8352637-CDS-C-tenellus_contig10131:4090..4417Choristocarpus tenellus KU2346CDSC-tenellus_contig10131 4091..4417 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789116.8618815-UTR-C-tenellus_contig10131:4417..46631680789116.8618815-UTR-C-tenellus_contig10131:4417..4663Choristocarpus tenellus KU2346UTRC-tenellus_contig10131 4418..4663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10131.3.1prot_C-tenellus_contig10131.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10131 4091..4417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10131.3.1

>prot_C-tenellus_contig10131.3.1 ID=prot_C-tenellus_contig10131.3.1|Name=mRNA_C-tenellus_contig10131.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=109bp
MQHMSGVCSSVNLFNSEKQTHISFTRSAFYPEQSALLPTAHKCVPFISLG
VLDLLIPIPILPALTPTCYAFHYFTTLQFTFFKFIVPFFFLSLLSTFFLA
IVTMPSVFR
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mRNA from alignment at C-tenellus_contig10131:4091..4663-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10131.3.1 ID=mRNA_C-tenellus_contig10131.3.1|Name=mRNA_C-tenellus_contig10131.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=573bp|location=Sequence derived from alignment at C-tenellus_contig10131:4091..4663- (Choristocarpus tenellus KU2346)
GGCTGAGGACTGGTGGAGATGTGGAGGTGGTGCTCTTTGTCAAACTGGCA
GGAGGGGATGCTGACCACTGTGGGTTGCAGCAGGTACGGGTGTTGCTTGA
ATGAATGGGACAACCCATTTAATTCCTTGGATCACCTCTACCCTGTCATT
TGTGAGTACAGTTCAAAGTTAGTCACCATGGTATATGTTATGTACCTGAT
GCTTGGTCTCGATCTCTTTTATTGCCAATAAACAGTGGAAGTTGGTATGC
AGCACATGTCAGGTGTCTGCTCTTCTGTAAATCTTTTCAACAGCGAGAAA
CAAACCCACATTTCTTTTACAAGAAGTGCTTTCTATCCAGAACAGTCAGC
ACTACTACCAACTGCTCACAAATGTGTTCCTTTCATCTCATTAGGAGTCC
TTGACCTTCTAATCCCAATACCCATCCTGCCTGCTCTTACCCCTACCTGT
TACGCCTTCCATTATTTTACAACACTGCAATTCACTTTTTTTAAATTCAT
TGTACCTTTTTTCTTCCTTTCCCTCCTATCCACCTTTTTTTTGGCAATTG
TCACTATGCCGTCCGTATTTCGC
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Coding sequence (CDS) from alignment at C-tenellus_contig10131:4091..4663-

>mRNA_C-tenellus_contig10131.3.1 ID=mRNA_C-tenellus_contig10131.3.1|Name=mRNA_C-tenellus_contig10131.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=327bp|location=Sequence derived from alignment at C-tenellus_contig10131:4091..4663- (Choristocarpus tenellus KU2346)
ATGCAGCACATGTCAGGTGTCTGCTCTTCTGTAAATCTTTTCAACAGCGA
GAAACAAACCCACATTTCTTTTACAAGAAGTGCTTTCTATCCAGAACAGT
CAGCACTACTACCAACTGCTCACAAATGTGTTCCTTTCATCTCATTAGGA
GTCCTTGACCTTCTAATCCCAATACCCATCCTGCCTGCTCTTACCCCTAC
CTGTTACGCCTTCCATTATTTTACAACACTGCAATTCACTTTTTTTAAAT
TCATTGTACCTTTTTTCTTCCTTTCCCTCCTATCCACCTTTTTTTTGGCA
ATTGTCACTATGCCGTCCGTATTTCGC
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