mRNA_C-tenellus_contig10131.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10131.1.1
Unique NamemRNA_C-tenellus_contig10131.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10131.1.1 vs. uniprot
Match: A0A836CAD5_9STRA (Acetoacetyl-CoA synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAD5_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.020e-8
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1
Query:    1 VEIAVTKIIHGEPINNESALVNPECLDEYRDIG 99
            VE+AVT+ +HGE + N SALVNPECLDEYR +G
Sbjct:  691 VEVAVTRAVHGEKVTNVSALVNPECLDEYRQLG 723          
BLAST of mRNA_C-tenellus_contig10131.1.1 vs. uniprot
Match: D7G8I3_ECTSI (Acetoacetate--CoA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I3_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.180e-6
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1
Query:    1 VEIAVTKIIHGEPINNESALVNPECLDEYRDIGRALQ 111
            VE+AVTK IHGE +NN SAL NP+ L ++ + GRAL+
Sbjct:  800 VEVAVTKAIHGETVNNLSALANPDSLQQFHEAGRALR 836          
BLAST of mRNA_C-tenellus_contig10131.1.1 vs. uniprot
Match: X1RJL2_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1RJL2_9ZZZZ)

HSP 1 Score: 50.1 bits (118), Expect = 2.970e-6
Identity = 23/37 (62.16%), Postives = 26/37 (70.27%), Query Frame = 1
Query:    1 VEIAVTKIIHGEPINNESALVNPECLDEYRDIGRALQ 111
            VEIAVT IIHG P++N  AL+NPE LD Y  I   LQ
Sbjct:  140 VEIAVTNIIHGRPVSNRDALINPESLDYYESILPELQ 176          
BLAST of mRNA_C-tenellus_contig10131.1.1 vs. uniprot
Match: A0A800D7M1_9CHLR (Acetoacetate--CoA ligase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A800D7M1_9CHLR)

HSP 1 Score: 50.8 bits (120), Expect = 3.020e-6
Identity = 24/37 (64.86%), Postives = 26/37 (70.27%), Query Frame = 1
Query:    1 VEIAVTKIIHGEPINNESALVNPECLDEYRDIGRALQ 111
            VEIAVT IIHG P+ N  ALVNPECLD +  I   LQ
Sbjct:  617 VEIAVTNIIHGRPVVNRDALVNPECLDYFEGILPELQ 653          
BLAST of mRNA_C-tenellus_contig10131.1.1 vs. uniprot
Match: A0A2E2XZU9_9BACT (Acetoacetate--CoA ligase n=1 Tax=Lentimicrobiaceae bacterium TaxID=2026756 RepID=A0A2E2XZU9_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 3.020e-6
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1
Query:    1 VEIAVTKIIHGEPINNESALVNPECLDEYRDI 96
            VEIAV KIIHG+P+ N+ AL NPECLD ++ I
Sbjct:  609 VEIAVKKIIHGQPVGNKDALANPECLDYFKGI 640          
BLAST of mRNA_C-tenellus_contig10131.1.1 vs. uniprot
Match: UPI0019D3F702 (acetoacetate--CoA ligase n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI0019D3F702)

HSP 1 Score: 50.4 bits (119), Expect = 4.140e-6
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 1
Query:    1 VEIAVTKIIHGEPINNESALVNPECLDEYRDI 96
            VE+AV K++HGEP+ N  AL NPE LD YRD+
Sbjct:  614 VELAVRKVVHGEPVKNTDALANPEALDLYRDL 645          
BLAST of mRNA_C-tenellus_contig10131.1.1 vs. uniprot
Match: A0A3M0ZMS5_9BACT (Acetoacetate--CoA ligase n=1 Tax=Candidatus Dadabacteria bacterium TaxID=2080303 RepID=A0A3M0ZMS5_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 4.140e-6
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 1
Query:    1 VEIAVTKIIHGEPINNESALVNPECLDEYRDI 96
            VEIAVTKIIHGE + N  AL NPE LD +RD+
Sbjct:  613 VEIAVTKIIHGEEVGNRDALANPEALDYFRDL 644          
BLAST of mRNA_C-tenellus_contig10131.1.1 vs. uniprot
Match: A0A6L4AM41_9DELT (Acetoacetate--CoA ligase n=1 Tax=Desulfobulbaceae bacterium TaxID=2053307 RepID=A0A6L4AM41_9DELT)

HSP 1 Score: 50.1 bits (118), Expect = 5.660e-6
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1
Query:    1 VEIAVTKIIHGEPINNESALVNPECLDEYRDI 96
            VE+AV KIIHGEP++N  AL NPE LD YR++
Sbjct:  614 VELAVRKIIHGEPVHNRDALANPESLDLYREL 645          
BLAST of mRNA_C-tenellus_contig10131.1.1 vs. uniprot
Match: A0A4Q6BUC4_9PROT (Acetoacetate--CoA ligase (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6BUC4_9PROT)

HSP 1 Score: 50.1 bits (118), Expect = 5.680e-6
Identity = 19/35 (54.29%), Postives = 27/35 (77.14%), Query Frame = 1
Query:    4 EIAVTKIIHGEPINNESALVNPECLDEYRDIGRAL 108
            E+AVT+I+HG P++N++A+ NPECL EY  I   L
Sbjct:  420 ELAVTRILHGRPLDNQTAIANPECLAEYERIAATL 454          
BLAST of mRNA_C-tenellus_contig10131.1.1 vs. uniprot
Match: A0A4Q6FWK0_9PROT (Acetoacetate--CoA ligase (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6FWK0_9PROT)

HSP 1 Score: 47.8 bits (112), Expect = 1.040e-5
Identity = 18/32 (56.25%), Postives = 26/32 (81.25%), Query Frame = 1
Query:    4 EIAVTKIIHGEPINNESALVNPECLDEYRDIG 99
            E+AVT+I+ G  ++N++A+ NPECLDEYR I 
Sbjct:   89 ELAVTRILQGRSLDNQTAIANPECLDEYRRIA 120          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10131.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CAD5_9STRA2.020e-869.70Acetoacetyl-CoA synthase n=1 Tax=Tribonema minus T... [more]
D7G8I3_ECTSI1.180e-659.46Acetoacetate--CoA ligase n=1 Tax=Ectocarpus silicu... [more]
X1RJL2_9ZZZZ2.970e-662.16Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A800D7M1_9CHLR3.020e-664.86Acetoacetate--CoA ligase n=1 Tax=Anaerolineae bact... [more]
A0A2E2XZU9_9BACT3.020e-665.63Acetoacetate--CoA ligase n=1 Tax=Lentimicrobiaceae... [more]
UPI0019D3F7024.140e-662.50acetoacetate--CoA ligase n=1 Tax=Parahaliea medite... [more]
A0A3M0ZMS5_9BACT4.140e-668.75Acetoacetate--CoA ligase n=1 Tax=Candidatus Dadaba... [more]
A0A6L4AM41_9DELT5.660e-665.63Acetoacetate--CoA ligase n=1 Tax=Desulfobulbaceae ... [more]
A0A4Q6BUC4_9PROT5.680e-654.29Acetoacetate--CoA ligase (Fragment) n=1 Tax=Proteo... [more]
A0A4Q6FWK0_9PROT1.040e-556.25Acetoacetate--CoA ligase (Fragment) n=1 Tax=Proteo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10131contigC-tenellus_contig10131:2790..2900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G8I3
PFAMsACAS_N,AMP-binding,AMP-binding_C
Model size111
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00014
KEGG koko:K01907
KEGG ReactionR01357
KEGG Pathwayko00280,ko00650,map00280,map00650
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.93e-07
EggNOG OGsCOG0365@1|root,KOG1175@2759|Eukaryota
EC6.2.1.16
Descriptionsynthetase
Cds size111
COG categoryI
BRITEko00000,ko00001,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789116.8968942-CDS-C-tenellus_contig10131:2789..29001680789116.8968942-CDS-C-tenellus_contig10131:2789..2900Choristocarpus tenellus KU2346CDSC-tenellus_contig10131 2790..2900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10131.1.1prot_C-tenellus_contig10131.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10131 2790..2900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10131.1.1

>prot_C-tenellus_contig10131.1.1 ID=prot_C-tenellus_contig10131.1.1|Name=mRNA_C-tenellus_contig10131.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=37bp
VEIAVTKIIHGEPINNESALVNPECLDEYRDIGRALQ
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mRNA from alignment at C-tenellus_contig10131:2790..2900-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10131.1.1 ID=mRNA_C-tenellus_contig10131.1.1|Name=mRNA_C-tenellus_contig10131.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=111bp|location=Sequence derived from alignment at C-tenellus_contig10131:2790..2900- (Choristocarpus tenellus KU2346)
GTAGAGATTGCCGTCACCAAGATTATCCATGGCGAGCCAATCAACAATGA GTCTGCACTGGTCAACCCTGAATGCCTGGATGAGTACAGAGATATTGGAC GGGCATTGCAA
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Coding sequence (CDS) from alignment at C-tenellus_contig10131:2790..2900-

>mRNA_C-tenellus_contig10131.1.1 ID=mRNA_C-tenellus_contig10131.1.1|Name=mRNA_C-tenellus_contig10131.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=111bp|location=Sequence derived from alignment at C-tenellus_contig10131:2790..2900- (Choristocarpus tenellus KU2346)
GTAGAGATTGCCGTCACCAAGATTATCCATGGCGAGCCAATCAACAATGA
GTCTGCACTGGTCAACCCTGAATGCCTGGATGAGTACAGAGATATTGGAC
GGGCATTGCAA
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