mRNA_C-tenellus_contig10129.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10129.1.1
Unique NamemRNA_C-tenellus_contig10129.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10129.1.1 vs. uniprot
Match: A0A835Z6S0_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S0_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.360e-11
Identity = 33/74 (44.59%), Postives = 54/74 (72.97%), Query Frame = 2 
Query:  728 MLPFWPVILVISIAACFLAPLLRGPYVVVDVFTYEGLDNQTWLSRSFGFHFMI--RPLRKGIARGIVNALRVAD 943
            M+PFWP++LV+ +   F+ P++RGPY+ +D +TY+GL N+ WLSR+ GF +++  R ++  IAR + + LR AD
Sbjct:    1 MVPFWPLVLVVHLVVHFVFPVIRGPYMRIDRYTYDGLVNELWLSRAPGFMYLLPWRFMQSRIARNVEDMLRSAD 74
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10129.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z6S0_9STRA3.360e-1144.59GH26 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10129contigC-tenellus_contig10129:750..3076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size951
Hectar predicted targeting categoryother localisation
Exons4
Cds size603
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10129.1.1prot_C-tenellus_contig10129.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10129 1818..2964 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789116.4711082-UTR-C-tenellus_contig10129:749..8531680789116.4711082-UTR-C-tenellus_contig10129:749..853Choristocarpus tenellus KU2346UTRC-tenellus_contig10129 750..853 -
1680789116.4831462-UTR-C-tenellus_contig10129:1685..18171680789116.4831462-UTR-C-tenellus_contig10129:1685..1817Choristocarpus tenellus KU2346UTRC-tenellus_contig10129 1686..1817 -
1680789116.5282478-UTR-C-tenellus_contig10129:2964..30761680789116.5282478-UTR-C-tenellus_contig10129:2964..3076Choristocarpus tenellus KU2346UTRC-tenellus_contig10129 2965..3076 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789116.493165-CDS-C-tenellus_contig10129:1817..18241680789116.493165-CDS-C-tenellus_contig10129:1817..1824Choristocarpus tenellus KU2346CDSC-tenellus_contig10129 1818..1824 -
1680789116.5050206-CDS-C-tenellus_contig10129:2147..23861680789116.5050206-CDS-C-tenellus_contig10129:2147..2386Choristocarpus tenellus KU2346CDSC-tenellus_contig10129 2148..2386 -
1680789116.516721-CDS-C-tenellus_contig10129:2607..29641680789116.516721-CDS-C-tenellus_contig10129:2607..2964Choristocarpus tenellus KU2346CDSC-tenellus_contig10129 2608..2964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10129.1.1

>prot_C-tenellus_contig10129.1.1 ID=prot_C-tenellus_contig10129.1.1|Name=mRNA_C-tenellus_contig10129.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=201bp
MTSEVADASHDQLIQEGLLRFQLRLLELEDSLTNFSLSISELSGLNDTSV
AEGWEPQGELEKRNLGIGGVGNLFVEPMEMGEDNFSQDWRENESSPLDAP
KALAVAMILIMLFALHRHMGNKRRNLLPNGSWSWGRWLTGLSRTAYRSQY
RADITREHERNKPYWTFKGEPCAVAFLAHPPTLLSTFAHWLPEVNPKERW
*
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mRNA from alignment at C-tenellus_contig10129:750..3076-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10129.1.1 ID=mRNA_C-tenellus_contig10129.1.1|Name=mRNA_C-tenellus_contig10129.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2327bp|location=Sequence derived from alignment at C-tenellus_contig10129:750..3076- (Choristocarpus tenellus KU2346)
AATACATATGTTGCTTTGCTACCCTTGTCTCTGCTGAGAGGATTTACCTT
TAGAAGTTGACCGGTTCTAGGCTCTTCCTTCTGACTGATGAAAAAAGGTA
GTCTTGCAGACGATGACGTCGGAAGTTGCGGATGCTTCCCATGACCAATT
GATCCAGGAGGGCTTACTTCGCTTCCAGCTACGCCTGCTCGAGCTTGAAG
ACAGCCTGACGAATTTCTCTCTATCGATTTCCGAGCTTTCCGGCCTTAAT
GATACCTCTGTGGCTGAAGGATGGGAACCTCAGGGGGAGTTGGAAAAGAG
GAATCTTGGTATTGGTGGTGTGGGTAACTTATTCGTAGAACCCATGGAGA
TGGGAGAGGATAATTTCTCCCAGGACTGGCGAGAGAATGAGTCGAGTCCG
CTTGATGCGCCCAAGGCATTGGCTGTGGCGATGATTCTGATTATGCTGTT
TGCCCTGCACCGGCACATGGTCAGTAAATCTGTGGGTGGCATTGTCCTCT
GTGGGTTTTGCTTGGATTCGAGGACTTGGGATTTGTCGCCACATTGAAGA
TAGTTGAAGAAGAGGCATCTCAGACTGCCCGAGTCAACGTCCCATTGATC
GAAATTGGCGTGCGGAAACACTCTTTGTGCCATTTATCCTTAGCGCTTCC
TCTTATTTGTCGTCCTTTACTTTCTCTGTCTCTTGGTTAGGGTAATAAGA
GAAGGAATCTACTCCCTAATGGAAGTTGGTCCTGGGGTCGTTGGCTGACG
GGATTGAGCCGCACCGCCTACCGCAGCCAATATCGTGCTGATATCACAAG
GGAACATGAACGCAACAAGCCGTATTGGACATTCAAAGGAGAGCCCTGTG
CCGTGGCATTCTTGGCTCATCCTCCTACTCTCTTGTCAACATTTGCTCAC
TGGTTGCCAGAGGTCAATCCCAAGGAGAGGTAACAACACAAGTAGCGCCC
AGATGAAATTCAAGCATTCAAAGCTGGGAGAAAATATCATGGGCTTAAAA
GTGATGTTAGTGTTAACAAACGTTATTAGCAGTACACAATGATCAATTAC
AGATTTAAAAAAAGTGTCTTTGCACTGAATTTAGACTGGAGGTCAACCTT
TTCCCCTCCTCCCCCGACACAGTACACACTTGCATGCCTTCATCTCAGAC
CAAACTCTTCCCCTCCCCCCCCCCTCCCCTTCTCTTCTTTTCATCATTGT
TTATACTTGTGACTACAATCGGGTTGCGGTGGGGCCCTGTGTCGAAAACA
AGGTGGTGAGGCGCCTGGTGGATGCTGCCGTTTTGGCCGGTGATCCTGGT
CATTAGTATTGCGGCTTGTTTCCTGGCCCCCCTTCTGCGTGGACCCTATG
TTGTGGTGGATGTCTTCACGTATGAGGGCCTCGACAATCAGGCATGAACA
CAGAACACCCACAACAGTGCTGTATACAGATAACTCTGTTGCCTGAAACA
ATGGCGCTTTTTTGGGCCTTGTCTTCCCATATACAGTGGGTTTAGGGTTA
GGGTTAGACAGTTAGTTCAATGTGACTTCCACCTTGTGAATCAAGCACAC
TTTAGGGGCTACTCTGGCAACCTTCTTCTCAAGCCGCTGTTGACTCATTG
AACGCTGTCATTGCTATTGCAATTTGTTTTTGTTTTTGTTTTTTTAAATT
CCTACTACGTAGTTCATGGCTTGGAAGTGTGATATTATGGTTTTGTATCT
TTTTGAAGGCGTATTGTGTTGAGAAACGTTTTGCCGAGGTGAACCTAAGG
TGACGTTACCCAAGACTCAACGGCTTCCACGTTGTCTATTTCACCCACAC
TATATGTTACACCCACATCATCTATTGGTGAGGGCTTCAAGGGGTTTTGG
AGAGGGGCCTACGGTGTACATAAAAACCACCTGTTCTTGAAGTCACCTGT
GTGTGTTATGTGTGTGTTGTGCATGTGTGTGTGTGTGTCTGTGTGTGTGT
GTGTGTTTGTGCCTTGATGCGACTTGTATTTCTGTACCACTAATGTACAC
ATTGAAATTTTGTTATTATTATTTTCACATTGTATCTGTGTATCACTATA
TATTACTCGAGAGCTTTGTAGATGGATAGTTTTGTGTGTGTGTGTATGTG
TGTGTATGTGTTTTTTGTGTTAATCTCTCTGTACGCAAGTGTGTGTGTGT
ACGTATGTCCACTTGACTTTTTCTATTATTTTTCTTTTTTTGGGGTGTGT
GTGTGTGACGTTCTTCCTTGCAGACGTGGTTGTCCAGATCCTTTGGGTTC
CACTTCATGATCCGTCCACTCCGTAAGGGGATCGCTCGGGGCATTGTGAA
TGCGCTCAGGGTCGCAGATGCTACCGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10129:750..3076-

>mRNA_C-tenellus_contig10129.1.1 ID=mRNA_C-tenellus_contig10129.1.1|Name=mRNA_C-tenellus_contig10129.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=603bp|location=Sequence derived from alignment at C-tenellus_contig10129:750..3076- (Choristocarpus tenellus KU2346)
ATGACGTCGGAAGTTGCGGATGCTTCCCATGACCAATTGATCCAGGAGGG
CTTACTTCGCTTCCAGCTACGCCTGCTCGAGCTTGAAGACAGCCTGACGA
ATTTCTCTCTATCGATTTCCGAGCTTTCCGGCCTTAATGATACCTCTGTG
GCTGAAGGATGGGAACCTCAGGGGGAGTTGGAAAAGAGGAATCTTGGTAT
TGGTGGTGTGGGTAACTTATTCGTAGAACCCATGGAGATGGGAGAGGATA
ATTTCTCCCAGGACTGGCGAGAGAATGAGTCGAGTCCGCTTGATGCGCCC
AAGGCATTGGCTGTGGCGATGATTCTGATTATGCTGTTTGCCCTGCACCG
GCACATGGGTAATAAGAGAAGGAATCTACTCCCTAATGGAAGTTGGTCCT
GGGGTCGTTGGCTGACGGGATTGAGCCGCACCGCCTACCGCAGCCAATAT
CGTGCTGATATCACAAGGGAACATGAACGCAACAAGCCGTATTGGACATT
CAAAGGAGAGCCCTGTGCCGTGGCATTCTTGGCTCATCCTCCTACTCTCT
TGTCAACATTTGCTCACTGGTTGCCAGAGGTCAATCCCAAGGAGAGGTGG
TGA
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