mRNA_C-tenellus_contig10127.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10127.3.1
Unique NamemRNA_C-tenellus_contig10127.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10127.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10127contigC-tenellus_contig10127:915..2688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1434
Hectar predicted targeting categoryother localisation
Exons3
Cds size975
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789116.300981-CDS-C-tenellus_contig10127:914..17291680789116.300981-CDS-C-tenellus_contig10127:914..1729Choristocarpus tenellus KU2346CDSC-tenellus_contig10127 915..1729 -
1680789116.3110921-CDS-C-tenellus_contig10127:1924..20841680789116.3110921-CDS-C-tenellus_contig10127:1924..2084Choristocarpus tenellus KU2346CDSC-tenellus_contig10127 1925..2084 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789116.3228571-UTR-C-tenellus_contig10127:2084..20931680789116.3228571-UTR-C-tenellus_contig10127:2084..2093Choristocarpus tenellus KU2346UTRC-tenellus_contig10127 2085..2093 -
1680789116.3331375-UTR-C-tenellus_contig10127:2238..26881680789116.3331375-UTR-C-tenellus_contig10127:2238..2688Choristocarpus tenellus KU2346UTRC-tenellus_contig10127 2239..2688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10127.3.1prot_C-tenellus_contig10127.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10127 915..2084 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10127.3.1

>prot_C-tenellus_contig10127.3.1 ID=prot_C-tenellus_contig10127.3.1|Name=mRNA_C-tenellus_contig10127.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=325bp
MRHCLRPLACHVLQRCVKQWVLLPSEVWQAGAQQELEQWFETVLHSIVQC
LRQAREQPSDGRALQCAIFQLELCNIVLSRTSPSAKIVRDVSCEDTFTHA
RSTDPMDNRKGRHFSESTLAQQVCAKVVCKYLPTICRGGNARSGGIPVTC
DGNPCSSCDAREGEGCRTRKDYKASYWVLMVLGAVLEHFLQQTGVPRDFH
LMAGVGCEFPPANCLSEERKSVEMDLDGLVQLMSSLMPPCAFAVTFKGQG
HVDTMIKWLEVAMVSGARCNLNILLHCLEIPQYFMHPLEQPFFSPYRLLH
PHCAHQHCFSHIQTLADVAHTSNPQ
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mRNA from alignment at C-tenellus_contig10127:915..2688-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10127.3.1 ID=mRNA_C-tenellus_contig10127.3.1|Name=mRNA_C-tenellus_contig10127.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1774bp|location=Sequence derived from alignment at C-tenellus_contig10127:915..2688- (Choristocarpus tenellus KU2346)
GATTGTGTCAGTGTTGAACTCAACTTGCTTTTGTAATGTAGTTGAGACTG
CTTTACACCGGCTGGTGAACACAATGCTAGCAGGTACTAGTAGTGGCGAT
GAATTGGTCTGTTGCATCGATCCTGGGATCCCACAACCTTGAAGACCCTG
GACTGGGTGCATTCTATCTGATGGCCCTCCCAATAGTATACATAAACGGT
GGTGTCAACTTTCCTTCAATTCACCATTGAACAGGCGAACACTGACCACG
AGGTGTACTCCGCATGCTACAGGCTTAGCAATGCACTTGCAAGTGAAGCC
TTCAAGACCCACATTGAGCCTTTGCCTGGACGTAGGGTTGCTGGAAGCCC
TCCTCGACGCCATTGCATAACCTCAGATGACGAAAACCTCCGGAGCCGAG
TCAATCAAGATTGTGGATCAGTGCTATTCGACGAGAGGCGATTCAAATTG
GTGAGGGGCGTCATATGCTACCCACATACACGCTTTTCGCCACCATTGCG
TTCGAGTTCAAACTATGAAAGGATTCTGGTTATTCCATGATAATCGTTCA
CCCATTCTGTCGATTTCACCTTACGAGTCGTAACCCCTGCCTTAGGTGGA
GCGAATGCGTCATTGCCTCAGACCCTTGGCCTGTCACGTGCTCCAGCGAT
GTGTAAAGCAATGGGTGCTGCTCCCTTCTGAAGTGTGGCAAGCTGGAGCC
CAGCAGGAACTCGAGCAATGGTTTGAGACAGTACTTCACAGTATCGTGCA
ATGCCTTAGACAAGGTCAGAATAACATGCGCCAGAACTACGCGTATTTGC
GGTGCGTGTGGATACATCCATACTGGACGAGAGAAACAAATTCGTTTTCC
TCCCGCCACCTGTTTGACTATCGAGTTGGTTGTCTTGTTGTCAAAGTAGT
TTATGGTGTCTCACGACTCTGACAAGGGCTTATATTTCCCCCTGCAATGT
TGGACACAGCAAGAGAACAGCCTTCTGATGGACGTGCTCTCCAGTGCGCC
ATTTTCCAGCTTGAGCTCTGCAACATTGTCCTTTCGCGTACATCCCCTTC
CGCGAAGATAGTACGCGATGTCTCATGTGAGGATACCTTCACTCATGCCA
GAAGTACCGACCCTATGGATAACAGAAAAGGGCGTCATTTTTCAGAATCA
ACCCTAGCGCAGCAGGTGTGTGCAAAGGTTGTGTGTAAATATTTGCCCAC
AATTTGCCGTGGTGGTAACGCCAGAAGTGGTGGTATCCCCGTCACCTGTG
ATGGAAACCCTTGCTCTAGTTGTGATGCACGTGAGGGAGAGGGGTGCAGG
ACAAGGAAGGACTACAAAGCAAGTTATTGGGTGCTCATGGTGCTGGGGGC
TGTTCTGGAGCATTTTCTTCAACAAACTGGTGTGCCAAGGGACTTCCACC
TCATGGCGGGAGTAGGATGTGAATTCCCTCCTGCTAATTGCTTATCTGAG
GAGCGCAAGTCGGTTGAGATGGACTTGGATGGTCTGGTCCAGTTGATGTC
ATCGTTGATGCCTCCATGTGCCTTTGCAGTAACGTTCAAAGGGCAAGGCC
ATGTGGACACCATGATCAAGTGGCTTGAGGTTGCAATGGTGAGTGGAGCA
CGCTGCAACTTGAACATTCTGTTGCATTGCCTAGAAATCCCACAATACTT
TATGCATCCCCTTGAACAACCGTTTTTCTCACCCTACCGCCTACTGCACC
CCCACTGCGCCCACCAACATTGTTTTTCTCATATTCAGACCTTGGCTGAT
GTCGCACACACAAGTAACCCACAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10127:915..2688-

>mRNA_C-tenellus_contig10127.3.1 ID=mRNA_C-tenellus_contig10127.3.1|Name=mRNA_C-tenellus_contig10127.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=975bp|location=Sequence derived from alignment at C-tenellus_contig10127:915..2688- (Choristocarpus tenellus KU2346)
ATGCGTCATTGCCTCAGACCCTTGGCCTGTCACGTGCTCCAGCGATGTGT
AAAGCAATGGGTGCTGCTCCCTTCTGAAGTGTGGCAAGCTGGAGCCCAGC
AGGAACTCGAGCAATGGTTTGAGACAGTACTTCACAGTATCGTGCAATGC
CTTAGACAAGCAAGAGAACAGCCTTCTGATGGACGTGCTCTCCAGTGCGC
CATTTTCCAGCTTGAGCTCTGCAACATTGTCCTTTCGCGTACATCCCCTT
CCGCGAAGATAGTACGCGATGTCTCATGTGAGGATACCTTCACTCATGCC
AGAAGTACCGACCCTATGGATAACAGAAAAGGGCGTCATTTTTCAGAATC
AACCCTAGCGCAGCAGGTGTGTGCAAAGGTTGTGTGTAAATATTTGCCCA
CAATTTGCCGTGGTGGTAACGCCAGAAGTGGTGGTATCCCCGTCACCTGT
GATGGAAACCCTTGCTCTAGTTGTGATGCACGTGAGGGAGAGGGGTGCAG
GACAAGGAAGGACTACAAAGCAAGTTATTGGGTGCTCATGGTGCTGGGGG
CTGTTCTGGAGCATTTTCTTCAACAAACTGGTGTGCCAAGGGACTTCCAC
CTCATGGCGGGAGTAGGATGTGAATTCCCTCCTGCTAATTGCTTATCTGA
GGAGCGCAAGTCGGTTGAGATGGACTTGGATGGTCTGGTCCAGTTGATGT
CATCGTTGATGCCTCCATGTGCCTTTGCAGTAACGTTCAAAGGGCAAGGC
CATGTGGACACCATGATCAAGTGGCTTGAGGTTGCAATGGTGAGTGGAGC
ACGCTGCAACTTGAACATTCTGTTGCATTGCCTAGAAATCCCACAATACT
TTATGCATCCCCTTGAACAACCGTTTTTCTCACCCTACCGCCTACTGCAC
CCCCACTGCGCCCACCAACATTGTTTTTCTCATATTCAGACCTTGGCTGA
TGTCGCACACACAAGTAACCCACAG
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