mRNA_C-tenellus_contig10115.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10115.1.1
Unique NamemRNA_C-tenellus_contig10115.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10115.1.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 1.240e-36
Identity = 68/115 (59.13%), Postives = 91/115 (79.13%), Query Frame = 3
Query:  264 MNPSRRLAQWLGGHLAQYVDDVDNDKLQAGLWDGDLLLQDLHIRSDAPRKLRLPLVLRQGAVEKIRLQVPWKTFASGRASLSVAGVTLVLEPLGNAIYDERIEEAIRAAVFAQKQ 608
            MN  R + QWL G L++YV +VD D L AGLW GDL+L+DL +R+D  RKL LP+VL+QG+V+ +R+QVPWK+F S +ASL V+G+TLVLEPLG+A YD+ IE  +R A+FA+KQ
Sbjct:    1 MNLFRVIPQWLAGKLSEYVHNVDFDSLGAGLWSGDLVLRDLQVRTDVSRKLHLPVVLKQGSVDLVRIQVPWKSFGSMKASLQVSGLTLVLEPLGSANYDDEIERGLRDAIFAKKQ 115          
BLAST of mRNA_C-tenellus_contig10115.1.1 vs. uniprot
Match: A0A835Z9T2_9STRA (Vacuolar protein sorting-associated protein 13A N-terminal domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9T2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 6.850e-24
Identity = 49/92 (53.26%), Postives = 65/92 (70.65%), Query Frame = 3
Query:  264 MNPSRRLAQWLGGHLAQYVDDVDNDKLQAGLWDGDLLLQDLHIRSDAPRKLRLPLVLRQGAVEKIRLQVPWKTFASGRASLSVAGVTLVLEP 539
            MN S++LA  L   L +YV +VD D LQ GLW GDL L++L +R DA RK  LP+VLR G+V  +RL+VPWK+F SG  +L V+ + +VLEP
Sbjct:    1 MNLSKKLANVLARTLGEYVQNVDEDSLQVGLWAGDLQLKNLELRPDALRKAELPVVLRSGSVGTVRLKVPWKSFGSGGVALVVSDLKVVLEP 92          
BLAST of mRNA_C-tenellus_contig10115.1.1 vs. uniprot
Match: A0A3M7PZ37_BRAPC (Vacuolar sorting-associated 13A n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7PZ37_BRAPC)

HSP 1 Score: 77.0 bits (188), Expect = 6.920e-13
Identity = 31/98 (31.63%), Postives = 67/98 (68.37%), Query Frame = 3
Query:  282 LAQWLGGHLAQYVDDVDNDKLQAGLWDGDLLLQDLHIRSDAPRKLRLPLVLRQGAVEKIRLQVPWKTFASGRASLSVAGVTLVLEPLGNAIYDERIEE 575
            +A +L  +L+ Y++D+D+  L+ G+W+G++ L++LH++S+A  +L LP+ +  G ++K+ L++PWK+  +     S+ G+T+++ P  +  +DE  E+
Sbjct:    7 VAYFLDKYLSNYIEDLDSSNLKIGIWNGNVTLENLHLKSNALDELELPIRIVFGHLKKLTLKIPWKSLYTESVKASIDGLTILIAPKSSFSFDEESEK 104          
BLAST of mRNA_C-tenellus_contig10115.1.1 vs. uniprot
Match: A0A814GG19_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A814GG19_9BILA)

HSP 1 Score: 67.8 bits (164), Expect = 6.060e-11
Identity = 27/92 (29.35%), Postives = 55/92 (59.78%), Query Frame = 3
Query:  306 LAQYVDDVDNDKLQAGLWDGDLLLQDLHIRSDAPRKLRLPLVLRQGAVEKIRLQVPWKTFASGRASLSVAGVTLVLEPLGNAIYDERIEEAI 581
            L  Y++D D+ +L+  LWDG++ L+++H++++A     +PL +  G +EK+++ +PWK   +    + + G  L++ P  + +YD    E I
Sbjct:   15 LGNYIEDFDSHQLKINLWDGNITLENVHLKTNALNDFNVPLEIITGYLEKLKIHIPWKYLYTHPTKIEIDGFFLLVAPKTDVVYDPEKAEQI 106          
BLAST of mRNA_C-tenellus_contig10115.1.1 vs. uniprot
Match: A0A6F9DWS6_9ASCI (Vacuolar protein sorting-associated protein 13A-like n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DWS6_9ASCI)

HSP 1 Score: 71.2 bits (173), Expect = 7.240e-11
Identity = 32/109 (29.36%), Postives = 63/109 (57.80%), Query Frame = 3
Query:  282 LAQWLGGHLAQYVDDVDNDKLQAGLWDGDLLLQDLHIRSDAPRKLRLPLVLRQGAVEKIRLQVPWKTFASGRASLSVAGVTLVLEPLGNAIYDERIEEAIRAAVFAQKQ 608
            + + +  +L +Y++++D  +L+ G+W GD +L++LH++ DA + L LP+ ++ G + K+ L++PWK         ++ G+ L+  P  +  YD   +E IR     Q Q
Sbjct:    7 VVELMNKYLGEYIENLDASQLKLGIWGGDAVLENLHVKGDALKDLNLPVQIKSGHIGKLTLKIPWKNLYKEAVEATLDGLFLLAVPNSSMEYDAE-KEKIREQESKQAQ 114          
BLAST of mRNA_C-tenellus_contig10115.1.1 vs. uniprot
Match: UPI000C25429D (vacuolar protein sorting-associated protein 13-like n=1 Tax=Leptinotarsa decemlineata TaxID=7539 RepID=UPI000C25429D)

HSP 1 Score: 70.1 bits (170), Expect = 1.170e-10
Identity = 35/109 (32.11%), Postives = 67/109 (61.47%), Query Frame = 3
Query:  282 LAQWLGGHLAQYVDDVDNDKLQAGLWDGDLLLQDLHIRSDAPRKLRLPLVLRQGAVEKIRLQVPWKTFASGRASLSVAGVTLVLEPLGNAIYDERIEEAIRAAVFAQKQ 608
            L+  L  +L  +V+++D ++L  G+W GD+ L++L +++ A  +L LP+ +  G +EK+ L++PWKT  +  + + + G+ L+L+P     YDE ++E  R   F  K+
Sbjct:    7 LSYILNKYLGTFVENLDANQLNVGIWGGDVELKNLVLKTSALDELDLPVEIVYGVIEKLVLKIPWKTVYTSPSVVCLEGIYLLLQPNQQVQYDE-VKEEKRKLEFKMKE 114          
BLAST of mRNA_C-tenellus_contig10115.1.1 vs. uniprot
Match: A0A7S0QMY0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QMY0_9CRYP)

HSP 1 Score: 70.5 bits (171), Expect = 1.320e-10
Identity = 30/92 (32.61%), Postives = 52/92 (56.52%), Query Frame = 3
Query:  282 LAQWLGGHLAQYVDDVDNDKLQAGLWDGDLLLQDLHIRSDAPRKLRLPLVLRQGAVEKIRLQVPWKTFASGRASLSVAGVTLVLEPLGNAIY 557
            L+ +L   L Q+V  +D + L+ G+W G+++L+DL +RSD    L  P  LR G +  +R+++PW +  S    + +  + L+L PL    Y
Sbjct:    6 LSNFLSSRLTQFVKHIDTENLKVGIWKGEVVLEDLELRSDCFEGLDAPFFLRGGYIGNLRIKIPWNSLTSKPVVIELEKIHLILHPLEGTTY 97          
BLAST of mRNA_C-tenellus_contig10115.1.1 vs. uniprot
Match: A0A821CSA1_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A821CSA1_9BILA)

HSP 1 Score: 67.4 bits (163), Expect = 1.710e-10
Identity = 28/90 (31.11%), Postives = 55/90 (61.11%), Query Frame = 3
Query:  306 LAQYVDDVDNDKLQAGLWDGDLLLQDLHIRSDAPRKLRLPLVLRQGAVEKIRLQVPWKTFASGRASLSVAGVTLVLEPLGNAIYDERIEE 575
            L  Y++D D+ +L+  LW GD++L+++H++++A     +PL +R G +EK+R+ +PWK   +    + + G  L++ P  +  YD   +E
Sbjct:   15 LGNYIEDFDSHQLKIHLWTGDIILENVHLKTNALNDFNVPLEIRTGYLEKLRIHIPWKHLYTYPTKIELDGFYLLVTPKTDVNYDVERKE 104          
BLAST of mRNA_C-tenellus_contig10115.1.1 vs. uniprot
Match: A0A816F6L2_9BILA (Hypothetical protein n=2 Tax=Rotaria sordida TaxID=392033 RepID=A0A816F6L2_9BILA)

HSP 1 Score: 68.6 bits (166), Expect = 1.770e-10
Identity = 31/94 (32.98%), Postives = 59/94 (62.77%), Query Frame = 3
Query:  294 LGGHLAQYVDDVDNDKLQAGLWDGDLLLQDLHIRSDAPRKLRLPLVLRQGAVEKIRLQVPWKTFASGRASLSVAGVTLVLEPLGNAIYDERIEE 575
            L  +L+ Y++++D  KL+  LW G+++L++L+++S+A   L LP+ +  G +EK+ L+VPWKT        ++ G+ L++ P     YD + +E
Sbjct:   11 LDKYLSDYIENLDTKKLKIDLWSGNVVLENLYLKSNALDDLDLPVTISLGYLEKLTLEVPWKTIYRSPTKATIDGLFLLVIPKTEVEYDVKRDE 104          
BLAST of mRNA_C-tenellus_contig10115.1.1 vs. uniprot
Match: UPI00193977E2 (vacuolar protein sorting-associated protein 13C-like isoform X1 n=2 Tax=Styela clava TaxID=7725 RepID=UPI00193977E2)

HSP 1 Score: 70.1 bits (170), Expect = 1.800e-10
Identity = 27/90 (30.00%), Postives = 57/90 (63.33%), Query Frame = 3
Query:  303 HLAQYVDDVDNDKLQAGLWDGDLLLQDLHIRSDAPRKLRLPLVLRQGAVEKIRLQVPWKTFASGRASLSVAGVTLVLEPLGNAIYDERIE 572
            +L+ Y++++D  +L+ G+W GD +L++LH++ DA + L LP+ ++ G + K+ L++PWK         ++ G+ ++  P  +  YD++ E
Sbjct:   14 YLSAYIENLDASQLKLGIWGGDAVLENLHVKGDALKDLDLPVTIKSGFIGKLTLKIPWKNLYKDAVEATLDGLYILAVPNNSIQYDDKKE 103          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10115.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8Y9_ECTSI1.240e-3659.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z9T2_9STRA6.850e-2453.26Vacuolar protein sorting-associated protein 13A N-... [more]
A0A3M7PZ37_BRAPC6.920e-1331.63Vacuolar sorting-associated 13A n=1 Tax=Brachionus... [more]
A0A814GG19_9BILA6.060e-1129.35Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]
A0A6F9DWS6_9ASCI7.240e-1129.36Vacuolar protein sorting-associated protein 13A-li... [more]
UPI000C25429D1.170e-1032.11vacuolar protein sorting-associated protein 13-lik... [more]
A0A7S0QMY0_9CRYP1.320e-1032.61Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A821CSA1_9BILA1.710e-1031.11Hypothetical protein (Fragment) n=1 Tax=Rotaria sp... [more]
A0A816F6L2_9BILA1.770e-1032.98Hypothetical protein n=2 Tax=Rotaria sordida TaxID... [more]
UPI00193977E21.800e-1030.00vacuolar protein sorting-associated protein 13C-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10115contigC-tenellus_contig10115:1396..2831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G8Y9
PFAMsSHR-BD,VPS13_mid_rpt
Model size609
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.38e-38
EggNOG OGsCOG5043@1|root,KOG1809@2759|Eukaryota
Descriptionregulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
Cds size345
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789115.8365612-CDS-C-tenellus_contig10115:1395..15361680789115.8365612-CDS-C-tenellus_contig10115:1395..1536Choristocarpus tenellus KU2346CDSC-tenellus_contig10115 1396..1536 -
1680789115.8527167-CDS-C-tenellus_contig10115:1985..21051680789115.8527167-CDS-C-tenellus_contig10115:1985..2105Choristocarpus tenellus KU2346CDSC-tenellus_contig10115 1986..2105 -
1680789115.8659651-CDS-C-tenellus_contig10115:2484..25681680789115.8659651-CDS-C-tenellus_contig10115:2484..2568Choristocarpus tenellus KU2346CDSC-tenellus_contig10115 2485..2568 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789115.879235-UTR-C-tenellus_contig10115:2568..28311680789115.879235-UTR-C-tenellus_contig10115:2568..2831Choristocarpus tenellus KU2346UTRC-tenellus_contig10115 2569..2831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10115.1.1prot_C-tenellus_contig10115.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10115 1396..2568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10115.1.1

>prot_C-tenellus_contig10115.1.1 ID=prot_C-tenellus_contig10115.1.1|Name=mRNA_C-tenellus_contig10115.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=115bp
MNPSRRLAQWLGGHLAQYVDDVDNDKLQAGLWDGDLLLQDLHIRSDAPRK
LRLPLVLRQGAVEKIRLQVPWKTFASGRASLSVAGVTLVLEPLGNAIYDE
RIEEAIRAAVFAQKQ
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mRNA from alignment at C-tenellus_contig10115:1396..2831-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10115.1.1 ID=mRNA_C-tenellus_contig10115.1.1|Name=mRNA_C-tenellus_contig10115.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1436bp|location=Sequence derived from alignment at C-tenellus_contig10115:1396..2831- (Choristocarpus tenellus KU2346)
GTCTGTTCAGATGATTGTTGGAATCGAGAGAGGAAACCTTTACACTTTTG GCATATAGCGAAAAGTGCTTCGCTTGTGTTAGTGCATACTCGAGCGTTGA CTTCGCCTCTGGATACTCTCGTACCTTTCCTTCGCTGTATAAGCTCTCGA GAATCTCAGGGCACATTAGGTGGAGGAATACTACCTTGACGTAAATGCCC GTTCCCGTTTCTGCTGGTTGGTGTGGGGGGTAGGAGCCTCTGGGGGGGCG TCGGTGCAGCGCCATGAATCCCAGCAGAAGATTAGCACAGTGGTTGGGAG GCCATCTCGCACAGTATGTTGATGACGTGGATAACGACAAGCTACAGGTA TTGGAAACAGAGAAACGGGCGTTGTTGGTTGTAATTTTGAATTGAAGATG GAGCAGCTATCTGAACCCAGGGGGACGATGATTACGCAAACCGCATCCCG AGTAATGTTTAACGTCAGGTATTGTTGTCTGTACTTGTTGGTAAGTCCCT TCACGTGGTTGATACTTGCAAGGAGAGCAGGTGTGACTTGAGCTACGTTT AGTAAACTGAACTTGAATTTGAGACGGGCAGGTGTGCCACCCGTTTCCCT TGGGAATCGATCAGCTGTCCATAGCATTTGCAAGTTACCTCCCTAATTGT CTGGAAAAATGCTTGACAAATGTGTACGATGAAAAGAATCATACCTTGTA TTATTTTGTGGTTCTTTTTCTTGTAGGCGGGATTGTGGGATGGGGATCTG CTTCTCCAAGACCTTCATATACGAAGTGATGCTCCACGCAAATTGCGACT CCCGCTAGTGTTGCGGCAAGGTGCAGTGGAGAAGATAAGACTGCAGGTGA TTATGGTCGCAGCTTGATGGTGTGAGCACAATCGTCGATGGTGGCAAGAA TGGGTGGGGCACGAATACCGAAAGCCTTTCCTGGGCACTCGGTGATCACT AGTCCTATCTTCAGTCAGAATAGCTCACCTTACTCGATAGGGTGGCATAT TCAGTCGTACACTTTATCAAGGAAACAGGCATAGACTTGGCACATTGTGT GTCGAATGTCAACGACTACGCTATTTTAGAGTTACGCGATGCTCTACCTG CTTGATTGCATCTGTGACATGGTGAAAATTAGGGTCTATGATTTGTACCT CTCATCAGGGACATGCTTTTGTGACATCCTTGCGTGTGCAACAGACCAGC TCCGACCTCTCCTTCTCATTTCCCACCCATTACTCTCCTTCTCCTTTGCA TTTCACACTTAATGATTGTGGAACTGCAAATTTATGCTGGTACAGGTGCC CTGGAAAACGTTTGCCAGTGGCCGTGCTTCCCTGAGTGTTGCAGGTGTAA CCCTGGTGCTGGAGCCACTGGGAAATGCGATATATGATGAGAGAATTGAA GAAGCCATCCGTGCCGCCGTCTTTGCTCAGAAACAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10115:1396..2831-

>mRNA_C-tenellus_contig10115.1.1 ID=mRNA_C-tenellus_contig10115.1.1|Name=mRNA_C-tenellus_contig10115.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=345bp|location=Sequence derived from alignment at C-tenellus_contig10115:1396..2831- (Choristocarpus tenellus KU2346)
ATGAATCCCAGCAGAAGATTAGCACAGTGGTTGGGAGGCCATCTCGCACA
GTATGTTGATGACGTGGATAACGACAAGCTACAGGCGGGATTGTGGGATG
GGGATCTGCTTCTCCAAGACCTTCATATACGAAGTGATGCTCCACGCAAA
TTGCGACTCCCGCTAGTGTTGCGGCAAGGTGCAGTGGAGAAGATAAGACT
GCAGGTGCCCTGGAAAACGTTTGCCAGTGGCCGTGCTTCCCTGAGTGTTG
CAGGTGTAACCCTGGTGCTGGAGCCACTGGGAAATGCGATATATGATGAG
AGAATTGAAGAAGCCATCCGTGCCGCCGTCTTTGCTCAGAAACAG
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