mRNA_C-tenellus_contig1011.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1011.4.1
Unique NamemRNA_C-tenellus_contig1011.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Match: D8LEY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY1_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.360e-24
Identity = 62/124 (50.00%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    7 NASVQEDQD--ALYLRSDDYQRTVMSGQILTASMFNMSRVTILPWHTGDVVMDPISTKESACPRLKDLKDEARHSKEYKDRLESAETKEFVQRAEKVWGSERK--HIIDCLMTTACTGKSLPEG 366
            NA+ +E QD  ALYLRSDD QRTVMSGQILTASM N+S   +L WHTGD   D ++     CPRL +L  EA +   + +   S E     +    VW  E     ++DCLMTTACTG+ LPEG
Sbjct:  175 NATAKELQDSGALYLRSDDEQRTVMSGQILTASMLNVSGA-VLDWHTGDDQYDYLAPNLETCPRLGELSGEALNDPSWIEVTSSWENTALNESMTSVWEQEVVWWDVLDCLMTTACTGRELPEG 297          
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Match: A0A6H5KW44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW44_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 8.480e-22
Identity = 59/123 (47.97%), Postives = 73/123 (59.35%), Query Frame = 1
Query:    7 NASVQEDQD--ALYLRSDDYQRTVMSGQILTASMFNMSRVTILPWHTGDVVMDPISTKESACPRLKDLKDEARHSKEYKDRLESAETKEFVQRAEKVWGSERK--HIIDCLMTTACTGKSLPE 363
            NA+ ++ QD  ALYLRSDD QRTVMSGQILTASM N+S   +L WHTGD   D +      CPRL +L  EA +   + +   S E          +W  E     ++DCLMTTACTG+ LPE
Sbjct:  175 NATAKDLQDSGALYLRSDDEQRTVMSGQILTASMLNVSGA-VLDWHTGDDQYDYLEPNLETCPRLVELSGEALNDPSWTEVTNSWENTALNVSMTSIWEQEVVWWDVLDCLMTTACTGRELPE 296          
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Match: A0A7S3GTC4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTC4_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.060e-18
Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = 1
Query:    7 NASVQEDQDALYLRSDDYQRTVMSGQILTASMFNMSRVTILPWHTGDVVMDPISTKESACPRLKDLKDEARHSKEYKDRLESAETKEFVQRAEKVWGS---ERKHIIDCLMTTACTGKSLPEG 366
            N   Q   +  YLRSDD QRT+MSGQIL  + FN++   I+PWHTGD  +D I    + CPRL  ++D+   + E+     S    +     +++WG+        +DC+MT  CT + LP G
Sbjct:  164 NWDEQYSANGFYLRSDDEQRTLMSGQILLHTFFNVTDEVIVPWHTGDYNLDQIYPNSNVCPRLNQIEDQGYATPEWIAENTSQAITQLTSDLDQIWGAGYWSWGTALDCMMTAVCTNRPLPSG 286          
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Match: A0A6U5E404_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5E404_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 5.940e-14
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   46 RSDDYQRTVMSGQILTASMFNMSRV---TILPWHTGDVVMDPISTKESACPRLKDLKDEARHSKEYKDRLESAETKEFVQ-RAEKVWGSERKHIIDCLMTTACTGKSLP 360
            R DD QRT+MSGQ L  S+F++       I+P+HT D  +DPI      CP+L DL+DEA  S EY  R  S +        +E + G   ++I+DCLMT  C  +S+P
Sbjct:  188 RGDDQQRTLMSGQTLVKSLFDVDTNGTNIIVPYHTADYPVDPIKPDTLICPKLTDLRDEAVKSDEYVARNFSEDVLVLENILSEDLGGGNWRNIMDCLMTQKCNKRSIP 296          
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Match: A0A448ZSB5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSB5_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.900e-13
Identity = 43/120 (35.83%), Postives = 70/120 (58.33%), Query Frame = 1
Query:   37 LYLRSDDYQRTVMSGQILTASMFN--MSRVT-------ILPWHTGDVVMDPISTKESACPRLKDLKDEARHSKEYK---DRLESAETKEFVQRAEKVWGSERKHIIDCLMTTACTGKSLP 360
            LY R+DDYQRTVMSGQIL   +F+  M+++        ++P H  D   D +   +  CPRL+ ++D+A  S +Y+   +   S E ++++Q  +KV   +   ++DC+M T CT + LP
Sbjct:  237 LYFRADDYQRTVMSGQILLRGLFDPEMTKIQSTTNKNIVIPLHIADEDRDIVDPNKYVCPRLQAIEDKAVQSPDYQAFENSRNSKEIRDYMQ--DKVKMDDDASVLDCMMCTICTDRPLP 354          
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Match: A0A7S3Q9U9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q9U9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 6.430e-12
Identity = 48/123 (39.02%), Postives = 67/123 (54.47%), Query Frame = 1
Query:   37 LYLRSDDYQRTVMSGQILTASMFN------------MSRVTILPWHTGDVVMDPISTKESACPRLKDLKDEARHSKEYKDR-LESAETKEFVQRAEKVWGSE-RKHIIDCLMTTACTGKSLPE 363
            LY R+DD QRT+MSGQ L   +F             +   TI+  HT D V D +S  ++ CPRL DL +EA  S++Y  + + S E+K   Q  E+ +G + R    DCLMTT C  + LP+
Sbjct:  258 LYYRADDDQRTIMSGQALLRGLFGDLIQQHSEELGTLVDPTIIV-HTADRVRDILSPNKAVCPRLSDLYEEATQSQDYVHQYVNSNESKLLNQFMEENFGGDFRDQAQDCLMTTICNDRELPQ 379          
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Match: K0SP99_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SP99_THAOC)

HSP 1 Score: 70.5 bits (171), Expect = 1.210e-11
Identity = 47/118 (39.83%), Postives = 60/118 (50.85%), Query Frame = 1
Query:   37 LYLRSDDYQRTVMSGQILTASMFNMS-------RVTILPWHTGDVVMDPISTKESACPRLKDLKDEARHSKEYKDRLES-AETKEFVQRAEKVWGSERKH--IIDCLMTTACTGKSLP 360
            L  RSDD QRT MSGQ+L   +F             I+  HT D V D +S  +  CPR  DL  EA  S EYK+  ES +E K   +  +   G +      +DCLMTT CT ++LP
Sbjct:  356 LRYRSDDEQRTAMSGQVLLRGLFEKEFLAVGDDETAIIRHHTADYVQDVLSVNDRICPRAHDLWLEAYESDEYKNWAESNSEVKVVKKFVKDELGLDEMPGATLDCLMTTICTDRTLP 473          
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Match: A0A7S3Q432_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q432_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.630e-11
Identity = 43/129 (33.33%), Postives = 67/129 (51.94%), Query Frame = 1
Query:   25 DQDALYLRSDDYQRTVMSGQILTASMFN-----------MSRVTILPWHTGDVVMDPISTKESACPRLKDLKDEARHSKEYKDRLESAET----KEFVQRAEKVWG--SERKHIIDCLMTTACTGKSLP 360
            D  ++Y RSDD QRT+MSGQ L + MF                 ++  HT D   D ++  E  CPRL  ++ EA+ S+++K+  E++E     K+F       W   ++    +DC MTTAC+ ++LP
Sbjct:  244 DDPSVYFRSDDDQRTIMSGQALLSEMFGDIMAHHLNLDANKHNPVIRVHTSDRNRDFLAPNEEICPRLAQVEHEAKQSQDWKNEFETSEEARTMKKFADEYLSGWWRYADSDVAMDCFMTTACSDRTLP 372          
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Match: A0A7S4HYT3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HYT3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.250e-11
Identity = 41/119 (34.45%), Postives = 62/119 (52.10%), Query Frame = 1
Query:   37 LYLRSDDYQRTVMSGQILTASMFN---------MSRVTILPWHTGDVVMDPISTKESACPRLKDLKDEARHSKEYKDRLESAETKEFVQRAEKVWGSE-RKHIIDCLMTTACTGKSLPE 363
            L+ R DD QRT+MSGQ+L   +F          +    ++  HT D   D ++ +E  CPRL DL++EA +S E+     S E +       +  G +   + +DCLMTT CT + LP+
Sbjct:  266 LHYRVDDQQRTLMSGQVLLRGLFGDLLRSHKQELGEDPVIVAHTADYSRDILAPREKICPRLVDLREEAENSAEFAAFNSSDEAEVLGTMMVETMGRDFMDNAVDCLMTTLCTDRPLPD 384          
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Match: A0A7S2HUA7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HUA7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.100e-11
Identity = 42/119 (35.29%), Postives = 63/119 (52.94%), Query Frame = 1
Query:   37 LYLRSDDYQRTVMSGQILTASMFN---------MSRVTILPWHTGDVVMDPISTKESACPRLKDLKDEARHSKEYKDRLESAETKEF-VQRAEKVWGSERKHIIDCLMTTACTGKSLPE 363
            L  R+DD QRT+MSGQ+L   M+               ++  HTGD  +D ++ +ES CPRL +L++EA  S+ ++    S E         E++      +I DCLMTT CT + LP+
Sbjct:  225 LRYRADDEQRTMMSGQVLLRGMWGDIIAKDSAETGENPVIIVHTGDYSVDVLAPRESNCPRLSELREEAEQSETFQTFNTSEEANILRTLMVEELGNDFTDNIHDCLMTTMCTDRKLPD 343          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEY1_ECTSI1.360e-2450.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW44_9PHAE8.480e-2247.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3GTC4_9STRA1.060e-1837.40Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6U5E404_9STRA5.940e-1441.28Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A448ZSB5_9STRA3.900e-1335.83Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S3Q9U9_9STRA6.430e-1239.02Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
K0SP99_THAOC1.210e-1139.83Uncharacterized protein n=2 Tax=Thalassiosira ocea... [more]
A0A7S3Q432_9STRA1.630e-1133.33Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S4HYT3_9STRA2.250e-1134.45Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2HUA7_9STRA4.100e-1135.29Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1011contigC-tenellus_contig1011:8343..10613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LEY1
PFAMsHis_Phos_2
Model size375
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K14395,ko:K19284,ko:K21403
KEGG ReactionR11527
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.23e-25
EggNOG OGsKOG3720@1|root,KOG3720@2759|Eukaryota
EC3.1.3.2
Descriptionacid phosphatase activity
Cds size375
COG categoryK
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789115.4076586-CDS-C-tenellus_contig1011:8342..84261680789115.4076586-CDS-C-tenellus_contig1011:8342..8426Choristocarpus tenellus KU2346CDSC-tenellus_contig1011 8343..8426 +
1680789115.4232917-CDS-C-tenellus_contig1011:8919..90771680789115.4232917-CDS-C-tenellus_contig1011:8919..9077Choristocarpus tenellus KU2346CDSC-tenellus_contig1011 8920..9077 +
1680789115.4341614-CDS-C-tenellus_contig1011:10480..106131680789115.4341614-CDS-C-tenellus_contig1011:10480..10613Choristocarpus tenellus KU2346CDSC-tenellus_contig1011 10481..10613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1011.4.1prot_C-tenellus_contig1011.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1011 8343..10613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1011.4.1

>prot_C-tenellus_contig1011.4.1 ID=prot_C-tenellus_contig1011.4.1|Name=mRNA_C-tenellus_contig1011.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=125bp
FGNASVQEDQDALYLRSDDYQRTVMSGQILTASMFNMSRVTILPWHTGDV
VMDPISTKESACPRLKDLKDEARHSKEYKDRLESAETKEFVQRAEKVWGS
ERKHIIDCLMTTACTGKSLPEGQK*
back to top

mRNA from alignment at C-tenellus_contig1011:8343..10613+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1011.4.1 ID=mRNA_C-tenellus_contig1011.4.1|Name=mRNA_C-tenellus_contig1011.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2271bp|location=Sequence derived from alignment at C-tenellus_contig1011:8343..10613+ (Choristocarpus tenellus KU2346)
TTTGGAAACGCCTCTGTACAGGAGGATCAGGACGCGCTTTACTTAAGGAG TGACGATTACCAAAGGACTGTAATGTCTGGCCAGGTATGTACATACACTT GCTTGCAGAACGAGGTACAGTAATGAGTGTTTCTGTAGCAATTTTCTTGT TCAATCTCAAACTGCACACAAGATGTATGCCTCACTTTTATCTTTGAAGT TATGTTTATAGTCTGGTGATATTCTGGGAGTAGGTCAGGGTTGCTTCCGT CTATTATGTTTTCCCCTATGTTTTGTTGTGTAACACACCTCTTGATAAAT AGCTCTGATCTTGGATGGATCAGGCTTCCAATGTAAAACTGTTACACCAG AATTAGCTTAGTAATCCGGAGTATTACAACAGGTACAAGCAGTCCAGGTG ATAAATTCAACTGTACGGTTGTGTCTCTTGCTGATGGGTCAATGAGGCAG ATGTTAGTTTTATGTTATTTCCTTCAAAGTATCCAGAGGAGTATACTATC CCAGTCATGCAGTTTCAATCTCTCCTTGTCCATATCATATGTTGATACAA ACAGTCTGGTCTTGTCCCCTCGACCAGATTTTAACAGCTAGCATGTTTAA CATGTCTAGGGTAACTATTCTCCCCTGGCACACTGGGGACGTGGTAATGG ACCCCATCTCTACGAAGGAGAGTGCATGCCCCCGCTTGAAGGATCTCAAG GATGAGGCCAGACATAGCAAGGAGTACAAAGATAGGTGAATGTTTCCATC TTGTTCACGTTTAGATATGCACAACAGAACTACACATAATATGTCGAAGT AGACCAATCCTGCTGCAACGGCCCTACTCTGCCTATGAAGTCTCTGCATG TGGACTTACTTCATTGCTTGCCTTCTCAATGCGCAGCCCCCAACTTATAT ATTTCATGCCACACACACACACACACACACATATGCGCGTGCGTGTGCAT GCAAAAGTATCCCCAGTTTTTCTACTGTGAATGCCATCAAACTGATTGAT GTTCATTAGTTTTTTCACTTGCGTACATATTAGTAATAAATATCATTCAC GTACAGTCTATTGTAATTGACTGGGGATGGTGAAGATTACGCATGAAATA TATCAGCAAGTTACATGTAGCAGAAAATAATTGAGCGCCTCAAATGCAGT AGATTTGCTCAGAAGTGACCGTGATATCGACAAACTTGATAGAAGGGAGG TCCGTACTGAGTGTAATGTGGTGCGCGTTCCTCTTCACATATCTACTTCA TTCTGGCCCATAATGCACAACATAAGGGAAACTAAACTTGAAAAGGAATT CCCTCACTCACCTATTGTTGGAGGGCTAAACCATCAGATGATGCTCCCGA GTGGGAGTGGTAGTACATTCCCAGGTGAAAACATGCCACATAAAACCTTC CACACTTAGATCAAACCTTTGGGATAGGGTCGAAGGTTTTGGTTCGATAC TACCATGACTAACACTTGTTGTCACACCTGCCAAATTGACCATTTATGGT AAGGGAAAGCAGTGCCTTTCATCAGCCTGAGTAGTTGGCTTGGCTGGGGT CCGTGCCATGTCCATGGGCCATCCTGTGGTCCAGTTATGTTGAAACCGGT GACGGCTATGGACCGACCCTGTTTGAACATGCTTGTACCGGATTGGCAGT CATTTTGAAACAGTTGGTGACCGTGAACAAGAAAGTATTTTTCACTGGAC TGACCCAGTCGTATGATCCCGAAATCATGCGGGAATAAGCACGTTTTTCA TATAGAGCTGTACCTGTCCCTTCAGCAACTGCTTTTTTGTTATTGTGTTA CATTGTTGGGATCAGACCGAACCGGTTTTGTATCACCAATGTTTTAAGGT TTGACTGCGGTTCAGTCCAGGTACAATCTCTGATGGCCCTGAGCTGGACA TGTCTAGAACTTGTCCAGTCTGTGCTCCAATACTCGGTATACCTGGTCTG GACATGTCACAAGACAACAGAACTGCTTTGGTCCATGGATCAGTCCCTTC ACATTTGCCCCACCTGGTGAAAACCCCTAGAACAAGGTGATAATGAGACG TAGTCTATGATATTGCTCTTTTTTTTTTATAGCCTGCAATCGAGGTCGCC CCCAATGCCCCCTTGTGACCCGATTTTCCTGCCAGCAGGCTAGAATCTGC CGAGACGAAGGAGTTTGTACAGCGAGCTGAAAAAGTCTGGGGTTCAGAGA GGAAGCACATTATAGATTGTCTAATGACAACAGCGTGCACTGGGAAGTCA CTACCTGAAGGTCAGAAATGA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig1011:8343..10613+

>mRNA_C-tenellus_contig1011.4.1 ID=mRNA_C-tenellus_contig1011.4.1|Name=mRNA_C-tenellus_contig1011.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=375bp|location=Sequence derived from alignment at C-tenellus_contig1011:8343..10613+ (Choristocarpus tenellus KU2346)
TTTGGAAACGCCTCTGTACAGGAGGATCAGGACGCGCTTTACTTAAGGAG
TGACGATTACCAAAGGACTGTAATGTCTGGCCAGATTTTAACAGCTAGCA
TGTTTAACATGTCTAGGGTAACTATTCTCCCCTGGCACACTGGGGACGTG
GTAATGGACCCCATCTCTACGAAGGAGAGTGCATGCCCCCGCTTGAAGGA
TCTCAAGGATGAGGCCAGACATAGCAAGGAGTACAAAGATAGGCTAGAAT
CTGCCGAGACGAAGGAGTTTGTACAGCGAGCTGAAAAAGTCTGGGGTTCA
GAGAGGAAGCACATTATAGATTGTCTAATGACAACAGCGTGCACTGGGAA
GTCACTACCTGAAGGTCAGAAATGA
back to top