mRNA_C-tenellus_contig1011.4.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Match: D8LEY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY1_ECTSI) HSP 1 Score: 104 bits (259), Expect = 1.360e-24 Identity = 62/124 (50.00%), Postives = 76/124 (61.29%), Query Frame = 1 Query: 7 NASVQEDQD--ALYLRSDDYQRTVMSGQILTASMFNMSRVTILPWHTGDVVMDPISTKESACPRLKDLKDEARHSKEYKDRLESAETKEFVQRAEKVWGSERK--HIIDCLMTTACTGKSLPEG 366 NA+ +E QD ALYLRSDD QRTVMSGQILTASM N+S +L WHTGD D ++ CPRL +L EA + + + S E + VW E ++DCLMTTACTG+ LPEG Sbjct: 175 NATAKELQDSGALYLRSDDEQRTVMSGQILTASMLNVSGA-VLDWHTGDDQYDYLAPNLETCPRLGELSGEALNDPSWIEVTSSWENTALNESMTSVWEQEVVWWDVLDCLMTTACTGRELPEG 297
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Match: A0A6H5KW44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW44_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 8.480e-22 Identity = 59/123 (47.97%), Postives = 73/123 (59.35%), Query Frame = 1 Query: 7 NASVQEDQD--ALYLRSDDYQRTVMSGQILTASMFNMSRVTILPWHTGDVVMDPISTKESACPRLKDLKDEARHSKEYKDRLESAETKEFVQRAEKVWGSERK--HIIDCLMTTACTGKSLPE 363 NA+ ++ QD ALYLRSDD QRTVMSGQILTASM N+S +L WHTGD D + CPRL +L EA + + + S E +W E ++DCLMTTACTG+ LPE Sbjct: 175 NATAKDLQDSGALYLRSDDEQRTVMSGQILTASMLNVSGA-VLDWHTGDDQYDYLEPNLETCPRLVELSGEALNDPSWTEVTNSWENTALNVSMTSIWEQEVVWWDVLDCLMTTACTGRELPE 296
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Match: A0A7S3GTC4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTC4_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.060e-18 Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = 1 Query: 7 NASVQEDQDALYLRSDDYQRTVMSGQILTASMFNMSRVTILPWHTGDVVMDPISTKESACPRLKDLKDEARHSKEYKDRLESAETKEFVQRAEKVWGS---ERKHIIDCLMTTACTGKSLPEG 366 N Q + YLRSDD QRT+MSGQIL + FN++ I+PWHTGD +D I + CPRL ++D+ + E+ S + +++WG+ +DC+MT CT + LP G Sbjct: 164 NWDEQYSANGFYLRSDDEQRTLMSGQILLHTFFNVTDEVIVPWHTGDYNLDQIYPNSNVCPRLNQIEDQGYATPEWIAENTSQAITQLTSDLDQIWGAGYWSWGTALDCMMTAVCTNRPLPSG 286
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Match: A0A6U5E404_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5E404_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 5.940e-14 Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 1 Query: 46 RSDDYQRTVMSGQILTASMFNMSRV---TILPWHTGDVVMDPISTKESACPRLKDLKDEARHSKEYKDRLESAETKEFVQ-RAEKVWGSERKHIIDCLMTTACTGKSLP 360 R DD QRT+MSGQ L S+F++ I+P+HT D +DPI CP+L DL+DEA S EY R S + +E + G ++I+DCLMT C +S+P Sbjct: 188 RGDDQQRTLMSGQTLVKSLFDVDTNGTNIIVPYHTADYPVDPIKPDTLICPKLTDLRDEAVKSDEYVARNFSEDVLVLENILSEDLGGGNWRNIMDCLMTQKCNKRSIP 296
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Match: A0A448ZSB5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSB5_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 3.900e-13 Identity = 43/120 (35.83%), Postives = 70/120 (58.33%), Query Frame = 1 Query: 37 LYLRSDDYQRTVMSGQILTASMFN--MSRVT-------ILPWHTGDVVMDPISTKESACPRLKDLKDEARHSKEYK---DRLESAETKEFVQRAEKVWGSERKHIIDCLMTTACTGKSLP 360 LY R+DDYQRTVMSGQIL +F+ M+++ ++P H D D + + CPRL+ ++D+A S +Y+ + S E ++++Q +KV + ++DC+M T CT + LP Sbjct: 237 LYFRADDYQRTVMSGQILLRGLFDPEMTKIQSTTNKNIVIPLHIADEDRDIVDPNKYVCPRLQAIEDKAVQSPDYQAFENSRNSKEIRDYMQ--DKVKMDDDASVLDCMMCTICTDRPLP 354
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Match: A0A7S3Q9U9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q9U9_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 6.430e-12 Identity = 48/123 (39.02%), Postives = 67/123 (54.47%), Query Frame = 1 Query: 37 LYLRSDDYQRTVMSGQILTASMFN------------MSRVTILPWHTGDVVMDPISTKESACPRLKDLKDEARHSKEYKDR-LESAETKEFVQRAEKVWGSE-RKHIIDCLMTTACTGKSLPE 363 LY R+DD QRT+MSGQ L +F + TI+ HT D V D +S ++ CPRL DL +EA S++Y + + S E+K Q E+ +G + R DCLMTT C + LP+ Sbjct: 258 LYYRADDDQRTIMSGQALLRGLFGDLIQQHSEELGTLVDPTIIV-HTADRVRDILSPNKAVCPRLSDLYEEATQSQDYVHQYVNSNESKLLNQFMEENFGGDFRDQAQDCLMTTICNDRELPQ 379
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Match: K0SP99_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SP99_THAOC) HSP 1 Score: 70.5 bits (171), Expect = 1.210e-11 Identity = 47/118 (39.83%), Postives = 60/118 (50.85%), Query Frame = 1 Query: 37 LYLRSDDYQRTVMSGQILTASMFNMS-------RVTILPWHTGDVVMDPISTKESACPRLKDLKDEARHSKEYKDRLES-AETKEFVQRAEKVWGSERKH--IIDCLMTTACTGKSLP 360 L RSDD QRT MSGQ+L +F I+ HT D V D +S + CPR DL EA S EYK+ ES +E K + + G + +DCLMTT CT ++LP Sbjct: 356 LRYRSDDEQRTAMSGQVLLRGLFEKEFLAVGDDETAIIRHHTADYVQDVLSVNDRICPRAHDLWLEAYESDEYKNWAESNSEVKVVKKFVKDELGLDEMPGATLDCLMTTICTDRTLP 473
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Match: A0A7S3Q432_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q432_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 1.630e-11 Identity = 43/129 (33.33%), Postives = 67/129 (51.94%), Query Frame = 1 Query: 25 DQDALYLRSDDYQRTVMSGQILTASMFN-----------MSRVTILPWHTGDVVMDPISTKESACPRLKDLKDEARHSKEYKDRLESAET----KEFVQRAEKVWG--SERKHIIDCLMTTACTGKSLP 360 D ++Y RSDD QRT+MSGQ L + MF ++ HT D D ++ E CPRL ++ EA+ S+++K+ E++E K+F W ++ +DC MTTAC+ ++LP Sbjct: 244 DDPSVYFRSDDDQRTIMSGQALLSEMFGDIMAHHLNLDANKHNPVIRVHTSDRNRDFLAPNEEICPRLAQVEHEAKQSQDWKNEFETSEEARTMKKFADEYLSGWWRYADSDVAMDCFMTTACSDRTLP 372
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Match: A0A7S4HYT3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HYT3_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 2.250e-11 Identity = 41/119 (34.45%), Postives = 62/119 (52.10%), Query Frame = 1 Query: 37 LYLRSDDYQRTVMSGQILTASMFN---------MSRVTILPWHTGDVVMDPISTKESACPRLKDLKDEARHSKEYKDRLESAETKEFVQRAEKVWGSE-RKHIIDCLMTTACTGKSLPE 363 L+ R DD QRT+MSGQ+L +F + ++ HT D D ++ +E CPRL DL++EA +S E+ S E + + G + + +DCLMTT CT + LP+ Sbjct: 266 LHYRVDDQQRTLMSGQVLLRGLFGDLLRSHKQELGEDPVIVAHTADYSRDILAPREKICPRLVDLREEAENSAEFAAFNSSDEAEVLGTMMVETMGRDFMDNAVDCLMTTLCTDRPLPD 384
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Match: A0A7S2HUA7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HUA7_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 4.100e-11 Identity = 42/119 (35.29%), Postives = 63/119 (52.94%), Query Frame = 1 Query: 37 LYLRSDDYQRTVMSGQILTASMFN---------MSRVTILPWHTGDVVMDPISTKESACPRLKDLKDEARHSKEYKDRLESAETKEF-VQRAEKVWGSERKHIIDCLMTTACTGKSLPE 363 L R+DD QRT+MSGQ+L M+ ++ HTGD +D ++ +ES CPRL +L++EA S+ ++ S E E++ +I DCLMTT CT + LP+ Sbjct: 225 LRYRADDEQRTMMSGQVLLRGMWGDIIAKDSAETGENPVIIVHTGDYSVDVLAPRESNCPRLSELREEAEQSETFQTFNTSEEANILRTLMVEELGNDFTDNIHDCLMTTMCTDRKLPD 343 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1011.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig1011.4.1 >prot_C-tenellus_contig1011.4.1 ID=prot_C-tenellus_contig1011.4.1|Name=mRNA_C-tenellus_contig1011.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=125bp FGNASVQEDQDALYLRSDDYQRTVMSGQILTASMFNMSRVTILPWHTGDVback to top mRNA from alignment at C-tenellus_contig1011:8343..10613+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig1011.4.1 ID=mRNA_C-tenellus_contig1011.4.1|Name=mRNA_C-tenellus_contig1011.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2271bp|location=Sequence derived from alignment at C-tenellus_contig1011:8343..10613+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig1011:8343..10613+ >mRNA_C-tenellus_contig1011.4.1 ID=mRNA_C-tenellus_contig1011.4.1|Name=mRNA_C-tenellus_contig1011.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=375bp|location=Sequence derived from alignment at C-tenellus_contig1011:8343..10613+ (Choristocarpus tenellus KU2346)back to top |