mRNA_C-tenellus_contig10108.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10108.1.1
Unique NamemRNA_C-tenellus_contig10108.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10108.1.1 vs. uniprot
Match: D8LTP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP0_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.350e-5
Identity = 33/63 (52.38%), Postives = 34/63 (53.97%), Query Frame = 3 
Query:  633 LRKGYLLMXXXXXXXXXXV--------------EWLERFFYLSGHFLRYKKHSLNLTSVNLKQ 779
            +RKGYLLM                         EW ERFFYL GHFLRYKK S NLTSVNLKQ
Sbjct:  141 IRKGYLLMLTKPGQTWSGTAGGGGGVGVEAGSGEWSERFFYLLGHFLRYKKQSRNLTSVNLKQ 203
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10108.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTP0_ECTSI1.350e-552.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10108contigC-tenellus_contig10108:3350..4934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LTP0
PFAMsDUF1769
Model size779
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.15e-07
EggNOG OGs2CZJM@1|root,2SAPD@2759|Eukaryota
Cds size486
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789115.2321987-UTR-C-tenellus_contig10108:3349..36421680789115.2321987-UTR-C-tenellus_contig10108:3349..3642Choristocarpus tenellus KU2346UTRC-tenellus_contig10108 3350..3642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789115.2510808-CDS-C-tenellus_contig10108:3642..37981680789115.2510808-CDS-C-tenellus_contig10108:3642..3798Choristocarpus tenellus KU2346CDSC-tenellus_contig10108 3643..3798 +
1680789115.2658453-CDS-C-tenellus_contig10108:4193..43861680789115.2658453-CDS-C-tenellus_contig10108:4193..4386Choristocarpus tenellus KU2346CDSC-tenellus_contig10108 4194..4386 +
1680789115.2773342-CDS-C-tenellus_contig10108:4797..49341680789115.2773342-CDS-C-tenellus_contig10108:4797..4934Choristocarpus tenellus KU2346CDSC-tenellus_contig10108 4798..4934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10108.1.1prot_C-tenellus_contig10108.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10108 3643..4934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10108.1.1

>prot_C-tenellus_contig10108.1.1 ID=prot_C-tenellus_contig10108.1.1|Name=mRNA_C-tenellus_contig10108.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=162bp
MSGLGSEQSSPRLPLSRKLVAAGKAAIRGRTDGARATVGALRSHVSPQVN
NEDPLLSSRRRTLTHSNSSNGRIGDTWGAGSSVQRRSGSHTPGMMAGEGM
GTLVLANGKGISRLRKGYLLMMREGGGGGGGVEWLERFFYLSGHFLRYKK
HSLNLTSVNLKQ
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mRNA from alignment at C-tenellus_contig10108:3350..4934+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10108.1.1 ID=mRNA_C-tenellus_contig10108.1.1|Name=mRNA_C-tenellus_contig10108.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1585bp|location=Sequence derived from alignment at C-tenellus_contig10108:3350..4934+ (Choristocarpus tenellus KU2346)
GATAGAGTTAAGGAACCCGCACAGAACTTCATATCAAGGAGAAGAAGAAC
AGAAACTGTAGGTGGAAGGTGGAATAGGATTGCCACTAGAAAATTACCCC
TCGGTACATCAGACACTCAGATATAGTTCCAGCATCCTAGTTTTTTTGGA
TTTTCCACCTTTGCATATTGCATAAATATAGTAAATAGTATAGTTGTAAA
AGGGTTGTGACTTAGATATGGTGTGAGGACTTGACAGGGGTTGCGTTCTA
CAACTATATTGATGTATGATCAGTGGAAAGATTCCCTGATGAGATGAGTG
GCTTGGGTTCAGAGCAGTCTTCCCCACGTTTACCGCTAAGTAGAAAATTG
GTTGCAGCGGGGAAGGCAGCTATTCGAGGAAGGACCGATGGAGCTAGGGC
AACCGTGGGCGCACTCCGCTCACATGTATCTCCCCAAGTAAACAACGAGG
TGATAAGCTGGACCAGTATCTGATGCACTCTAAGTGGGATCTAGACGTCC
TCATGTGGCTCTGGTATTCCGTGCTTTTTTTTGCCCATAACAACGAAGTC
GTTCCTTCTCCATGTCTTGTGCTCCCTTTCAATCCACACGCCTATAGCCA
AGGTACATGATGCAGAGTTTAGAAATTAGAGATATTGGCACACTCTTCGC
CAGGTAATGATATTTTCCACCTCTTTCACCCCTATTCCCTTCCCCATGAA
AACAGAGAATTCTCCTGGAGTCCTCAATGTTTTGTTTTTGCAGTGATACT
ACTCCAATTTTAGTCTCCGCCCATCTTTTGTCGCCGTCTAGAAACTACCT
AATTTTGATCCTTCTTGTCATCCGCACGTAATGGCATGGAGAAGGACCCA
CTACTCAGTAGTCGAAGGCGAACTCTAACTCACAGCAATAGTAGCAACGG
TAGAATAGGCGATACGTGGGGTGCTGGGTCATCTGTACAAAGGCGCAGCG
GTTCTCACACCCCTGGAATGATGGCAGGGGAGGGCATGGGGACCCTCGTA
CTTGCTAATGGCAAGGGAATCTCTAGGCTAAGAAAGGGTAAGTTCTGCAA
TAGTAGACTAATGGGGACGCGTGATTTGAGAGCATTTATATTGTTGTGTT
GCCAGTCGCGAATGAGAGAACATGTGGACGATGATCTGCCAAAGCAAAAT
GGTCATGTGCCCCTTCAGAAACTCTGAGAGTAGTATTTTGCAACTGATGA
TGCTTTTTCAAGCGAGGTCTGTGACAAGATTCCTCCAATCTCCCTGGACC
TGTCTCTTCTTTCCCCACTTCATATTTTCATGGTCAGACTGTTAGCGACT
ACCCCACCAAATCGCGCACAGTGTATTCTTCTTTCTCTGGCGCAGACAAC
GCACAGAATACAACGCAACACAAGGTTTACAACAACCTCAACGCATGATA
AGCACCCAAGACCAACTCCCGCAAAATGTGACTGTTGGAAATGTGCAGGC
TACCTCCTCATGATGCGGGAAGGGGGTGGCGGGGGTGGGGGTGTAGAGTG
GTTGGAGCGCTTCTTCTACCTTTCTGGCCACTTCCTGCGCTACAAGAAGC
ACTCTCTTAACCTCACCTCAGTCAACCTCAAACAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10108:3350..4934+

>mRNA_C-tenellus_contig10108.1.1 ID=mRNA_C-tenellus_contig10108.1.1|Name=mRNA_C-tenellus_contig10108.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=486bp|location=Sequence derived from alignment at C-tenellus_contig10108:3350..4934+ (Choristocarpus tenellus KU2346)
ATGAGTGGCTTGGGTTCAGAGCAGTCTTCCCCACGTTTACCGCTAAGTAG
AAAATTGGTTGCAGCGGGGAAGGCAGCTATTCGAGGAAGGACCGATGGAG
CTAGGGCAACCGTGGGCGCACTCCGCTCACATGTATCTCCCCAAGTAAAC
AACGAGGACCCACTACTCAGTAGTCGAAGGCGAACTCTAACTCACAGCAA
TAGTAGCAACGGTAGAATAGGCGATACGTGGGGTGCTGGGTCATCTGTAC
AAAGGCGCAGCGGTTCTCACACCCCTGGAATGATGGCAGGGGAGGGCATG
GGGACCCTCGTACTTGCTAATGGCAAGGGAATCTCTAGGCTAAGAAAGGG
CTACCTCCTCATGATGCGGGAAGGGGGTGGCGGGGGTGGGGGTGTAGAGT
GGTTGGAGCGCTTCTTCTACCTTTCTGGCCACTTCCTGCGCTACAAGAAG
CACTCTCTTAACCTCACCTCAGTCAACCTCAAACAG
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