mRNA_C-tenellus_contig10107.2.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10107.2.2
Unique NamemRNA_C-tenellus_contig10107.2.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10107.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10107contigC-tenellus_contig10107:338..3678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size692
Hectar predicted targeting categoryother localisation
Exons4
Cds size582
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789115.1543767-CDS-C-tenellus_contig10107:337..5711680789115.1543767-CDS-C-tenellus_contig10107:337..571Choristocarpus tenellus KU2346CDSC-tenellus_contig10107 338..571 -
1680789115.167516-CDS-C-tenellus_contig10107:1304..14451680789115.167516-CDS-C-tenellus_contig10107:1304..1445Choristocarpus tenellus KU2346CDSC-tenellus_contig10107 1305..1445 -
1680789115.178478-CDS-C-tenellus_contig10107:2879..30571680789115.178478-CDS-C-tenellus_contig10107:2879..3057Choristocarpus tenellus KU2346CDSC-tenellus_contig10107 2880..3057 -
1680789115.1866322-CDS-C-tenellus_contig10107:3539..35681680789115.1866322-CDS-C-tenellus_contig10107:3539..3568Choristocarpus tenellus KU2346CDSC-tenellus_contig10107 3540..3568 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789115.1966813-UTR-C-tenellus_contig10107:3568..36781680789115.1966813-UTR-C-tenellus_contig10107:3568..3678Choristocarpus tenellus KU2346UTRC-tenellus_contig10107 3569..3678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10107.2.2prot_C-tenellus_contig10107.2.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10107 338..3568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10107.2.2

>prot_C-tenellus_contig10107.2.2 ID=prot_C-tenellus_contig10107.2.2|Name=mRNA_C-tenellus_contig10107.2.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=194bp
MTSLGAPTLSWRNIHIGDTNMTSSGKGTETRSFMDESELPFRKGERVIVV
DDDGDGSGNKIYRAATIIMVSFRSVKRQLVPAFKVYYAGTARGLADEFVE
LGRMLKTTEETLLLKKEYEDRVGIKAPGRQVHPSLTPAPVAVPTVAKPDR
SSAPAPDSSAMPPPAQVQGSGAAVASTGMKPSSSVSQPTTSSSR
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mRNA from alignment at C-tenellus_contig10107:338..3678-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10107.2.2 ID=mRNA_C-tenellus_contig10107.2.2|Name=mRNA_C-tenellus_contig10107.2.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3341bp|location=Sequence derived from alignment at C-tenellus_contig10107:338..3678- (Choristocarpus tenellus KU2346)
ATTGAGGAGTTCATAAAACCTGCAGTGATAGTCGTATCAACAGAAGAGAG
TCCAAATTAGCGACGAAGACTAGGTCGAAGTTGAGGGTGTAAACCTCGAG
GGATGAAGACATGACTAGCCTCGGAGCACCAACCCTTAGGTTTGTGATAT
TTTGCGGGAGTTTTGCATGGCTGCGGCTCTCACACAGTTAGTCCCATTAA
TTATGTCGGGCACGTCTGTTCAGGAGGGGATCACGTTGTCGACTTCCTTT
AACTCTCGACAGAGTGGCAATCCATCCTGAAGGGGGTGGGATAATGGCTT
TGTATGAACATTCTCCTCTGTCTGGGTATTACTTCTGCGGTGGGGGTGCC
TAGAGGAGTCTCAGGAGGTCGTTTGTTTTTGATGACGACCACCTTGAACC
ATGATTTTGAATTGGTCCGTACAGCGTCAAACTTCACGTTTTGGTATCTA
CGCCGGACAACGACGCCTCAACTGAGACCATTGCCATAAAATCGAAGCTC
TGCCCGCTTCTTCACCAGAGGCCAAACACCGCTACCTCTCATCCCCACTT
CGCGTTCACTCATCGCCTCCTTGGTATCGCTTGTGCGTTGTACATGCTTA
TCTGTAACTGCTCGCATATAGCTGGAGGAATATACACATTGGAGATACCA
ACATGACCTCGAGTGGAAAGGGGACAGAGACTCGCTCGTTCATGGATGAA
AGTGAGCTTCCGTTCCGAAAAGGCGAGCGAGTAATCGTGGTAGACGATGA
TGGCGATGGAAGCGGGAACAAAATTTACAGGGCGGCAACGATCATCATGG
TGAGAGAGCTTTCCCCGCCTTTCCCGACCCAAGTGCCTGACCTGCTTGAC
CTTGGCATATGTCATGGACTCTGGTGCTAAAGATTTGGGGCTATAGATGA
CTGGCAGATTGAGATTCTTTCGATGTCGACGGTTAGAGAGCGGGTCACCT
TTGGTGTGGTCAGAGCAAGAACGTTTGGACGTGCTTGTTGTCCAGAGGGC
TTTCTCTGACGTGTTGGTGTTTTACTAGAAAAGCGTTATCTTTCCTTGAG
GTGAATACAAGATAACAAGAGAAACGAAAAGTGTGAAGAGGATGAGCAAC
CAGTGTTAGTTTGGTGTTGGAAGGTACTGGAAGGAGAACGAGGTCACAAC
CAGAGTATCTGGCGCCATATGTGGTTCCTTTTTTGTGTTGGGTTGGTAGG
TTGGTTGTATCCTCAGCGATTGTATCGATATTTCTCAACCTGATGATCAG
TGGGTCTCCTAAATCTCAGTTGTTACTGCCTCGCTTGTGTGTTGTGAGTG
TTATTGTGTCTGGGGATTTTTAGTTCACCTCGTTTATGATGTTCTATGTC
CCGTGCTGGTACATATCGACTCTGTACAATAGGGGTGAATTGCATGTTGT
CTCCAATCTAATTTCTTTTCTGAGAAAATAAGCAACAAACACCTTCTGTA
CTTTTTGTATCATTTTGTGAAGAACATGGACCGATTTTTGTCCTTTATTT
TGACTGCAGTCCAACAAAAAATTTATGCATTTGGTTGGTCCGAAGAGTAA
AGTGGTATGATACAGGATTCTGTGATACATCTGAAAAGAGAAAAGGGGAT
TATGATACGGTGGTGGGCTCAATTAGGGTCCCACACCCGGTGACCCTTGT
CTTTGGAGGAATGACCAAGTGATTTACAGAACAATGCAGTGATCGACATG
CTTAGCATTGTTACGCCCTGCAAGGATAACAGCCAGCAGGTGCTTAACTC
CTGTATTGGGCAGCACCACTGCTCCCCCCTCCCCCCCTCTCTTACATACC
TTTTCAATCCTTGCCTTCTGTCAAGCATTGATGTGCCATGCAAGCAACTG
TGGTGCCATGCAAGCAACTGTGGTGATTTGGACTTGATGCAGGATTAGGT
TTGTCCCTATTCTCACATACTACCAGTTGACACAGCGTACACGTGATGTT
CCTGTGAGGGAAGCAGATTTTTGTTTGACCTCCAAACTGGCGATTTTGAC
CTCCCAACCTCTTGAAAGCTCCCCGTGAGCCATACCTCGATGCTTGCCTG
ACCTTCCGCGAGCGCTTTTAGGTTGTGCCCAAGAACTCCGCCCCCCGCCT
GCAATGTGTAATCTGAACCGAAATGATAAAAAAAAAAAATGGACTTTGTG
TTACGATTGCTGCGCTCTCGGCGTGGGTACAAAACGAGGTTCTGAATGTG
ATTGAATGTTGGGGGTATGTTATGTGTGAAAAGGTGAGCTTCCGCAGCGT
CAAGCGGCAGCTCGTCCCGGCGTTTAAAGTGTACTATGCTGGCACTGCGC
GGGGACTGGCGGATGAATTTGTCGAGCTTGGGCGAATGCTCAAGACCACA
GAGGAGACACTGTTATTGAAAAAGGTCTGTGGCTGTTGTCGTATCTGAGG
TTGGTGCCAGTATTGGGCGTGTGTGGTTTGGTTTCATTGCTTTTTGTGAG
TCTTGTTCACACGCTGTAGGTCTACATTTTTTTTTTGTGTGTGTGTGTGT
TTGTGTGTGTGTGTGTTTTTTTTTATTGAGCTGGAGTGTTTATCCATCTC
CTCTCCTCAAAGCACCGTTTCTTTTGATGCCTAGTCTGGTTCCTTGTACA
CCCAGTGTACAAGTCAGTTCGCTGATCGTCGATTTTTCATTTGGCTCGGT
GTACTCTCCTTCTTGTTGTGCCCTAAATAGGATGGTGTAGATATATTATA
GACCGCAGCAGAGTGGGTGTATCGGAAATGGTTCTGCAGGTTAGGGTTTT
TACCTGTTTGCCTGCCCCTCCTCCCCCGCTTCTAACCCTAACTCCCCTGC
CCGTCATGTGTCTTGAGAGCCTCAAGGATGTAGGGACATGGAGAGGAAGG
CATCTCTCAGATTATCCTTGTGATGAACTCTTTCTCCAGTTTTATAGAGT
AGGTTGTTCCTCAGGCCTCAAGTTTCCTAGGACAGTCACCACCCCCTGTC
CACCTGAAACCAGTGTAACCCCCAGCGTAACACGTTGCGCCATGACTTGC
AGTAGTGTACCACATTCTTTCCTCTACAGATTCCTTGACTCCTCCCCCTT
CACCCCTCACCCCTTCCCTCACTTCTCATGGCACCCAATAATATATGTGA
CCTCCAGGAGTACGAAGACCGTGTGGGTATCAAGGCACCAGGCCGTCAGG
TCCACCCCTCGCTGACTCCAGCCCCCGTAGCCGTGCCCACAGTCGCCAAA
CCTGACAGAAGCTCTGCCCCTGCCCCAGACTCTTCCGCCATGCCTCCTCC
TGCCCAAGTGCAAGGCTCTGGGGCGGCTGTCGCCTCAACTGGCATGAAGC
CGTCCTCCTCGGTCTCCCAACCAACAACAAGCTCCTCACGC
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Coding sequence (CDS) from alignment at C-tenellus_contig10107:338..3678-

>mRNA_C-tenellus_contig10107.2.2 ID=mRNA_C-tenellus_contig10107.2.2|Name=mRNA_C-tenellus_contig10107.2.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=582bp|location=Sequence derived from alignment at C-tenellus_contig10107:338..3678- (Choristocarpus tenellus KU2346)
ATGACTAGCCTCGGAGCACCAACCCTTAGCTGGAGGAATATACACATTGG
AGATACCAACATGACCTCGAGTGGAAAGGGGACAGAGACTCGCTCGTTCA
TGGATGAAAGTGAGCTTCCGTTCCGAAAAGGCGAGCGAGTAATCGTGGTA
GACGATGATGGCGATGGAAGCGGGAACAAAATTTACAGGGCGGCAACGAT
CATCATGGTGAGCTTCCGCAGCGTCAAGCGGCAGCTCGTCCCGGCGTTTA
AAGTGTACTATGCTGGCACTGCGCGGGGACTGGCGGATGAATTTGTCGAG
CTTGGGCGAATGCTCAAGACCACAGAGGAGACACTGTTATTGAAAAAGGA
GTACGAAGACCGTGTGGGTATCAAGGCACCAGGCCGTCAGGTCCACCCCT
CGCTGACTCCAGCCCCCGTAGCCGTGCCCACAGTCGCCAAACCTGACAGA
AGCTCTGCCCCTGCCCCAGACTCTTCCGCCATGCCTCCTCCTGCCCAAGT
GCAAGGCTCTGGGGCGGCTGTCGCCTCAACTGGCATGAAGCCGTCCTCCT
CGGTCTCCCAACCAACAACAAGCTCCTCACGC
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