mRNA_C-tenellus_contig10106.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10106.3.1
Unique NamemRNA_C-tenellus_contig10106.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10106.3.1 vs. uniprot
Match: D7FIU1_ECTSI (S5A_REDUCTASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU1_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 2.270e-25
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    1 VKVVADEEKMSFRLDKANAGKFIDTGLWSHCRHPNYFGEMASARVLWFGMFIFCARGVLGTRGGWMAILGPLF 219
            ++VVAD +K +F+ D ANAGKFID GLWS CRHPNY GEM     LW G FIFC+RGV+    GW+A++GPLF
Sbjct:   21 LEVVADGQKRAFKADAANAGKFIDVGLWSRCRHPNYLGEM----TLWAGFFIFCSRGVV-AGSGWLALMGPLF 88          
BLAST of mRNA_C-tenellus_contig10106.3.1 vs. uniprot
Match: A0A6H5JH77_9PHAE (S5A_REDUCTASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH77_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.080e-22
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    1 VKVVADEEKMSFRLDKANAGKFIDTGLWSHCRHPNYFGEMASARVLWFGMFIFCARGVLGTRGGWMAILGPLF 219
            ++VVAD +K +F+ D ANAGKFID GLWS CRHPNY GEM     LW G FIFC+RGV+    GW+A++GPLF
Sbjct:  433 LEVVADGQKRAFKADAANAGKFIDVGLWSRCRHPNYLGEM----TLWAGFFIFCSRGVV-AGSGWLALVGPLF 500          
BLAST of mRNA_C-tenellus_contig10106.3.1 vs. uniprot
Match: A0A7Y3RNS9_9PROT (DUF1295 domain-containing protein n=1 Tax=Parvularcula mediterranea TaxID=2732508 RepID=A0A7Y3RNS9_9PROT)

HSP 1 Score: 81.3 bits (199), Expect = 9.230e-17
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 1
Query:    1 VKVVADEEKMSFRLDKANAGKFIDTGLWSHCRHPNYFGEMASARVLWFGMFIFCARGVLGTRGGWMAILGPLF 219
            ++V+ADE+K +FR D ANAGKFID GLWS  RHPNYFGE+    +LW GM +  A  VL T G W+ ++ PLF
Sbjct:  182 IEVIADEQKKAFRKDPANAGKFIDKGLWSRSRHPNYFGEI----LLWTGMAV-AAIPVL-TGGLWITLISPLF 248          
BLAST of mRNA_C-tenellus_contig10106.3.1 vs. uniprot
Match: A0A383WPW5_TETOB (S5A_REDUCTASE domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WPW5_TETOB)

HSP 1 Score: 81.3 bits (199), Expect = 1.570e-16
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    1 VKVVADEEKMSFRLDKANAGKFIDTGLWSHCRHPNYFGEMASARVLWFGMFIFCARGVLGTR 186
            V+  AD +K +F++D AN GKFID+GLWS+ R+PNYFGEM    ++W+GMFIFC+ G+ G +
Sbjct:  231 VEATADGQKFAFKMDPANKGKFIDSGLWSYARYPNYFGEM----MVWWGMFIFCSGGLQGAQ 288          
BLAST of mRNA_C-tenellus_contig10106.3.1 vs. uniprot
Match: A0A0D2M5S2_9CHLO (S5A_REDUCTASE domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2M5S2_9CHLO)

HSP 1 Score: 79.7 bits (195), Expect = 3.140e-16
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 VKVVADEEKMSFRLDKANAGKFIDTGLWSHCRHPNYFGEMASARVLWFGMFIFCARGVLGTRGGWMAILGPLF 219
            ++  AD +K +F++D AN G+FIDTGLWS+ R PNYFGEM     LW+G+FI C  G+ G +  ++++  PLF
Sbjct:  161 IEATADAQKFAFKMDPANKGRFIDTGLWSYSRFPNYFGEM----TLWWGIFITCTSGLSGAQ--FVSVASPLF 227          
BLAST of mRNA_C-tenellus_contig10106.3.1 vs. uniprot
Match: A0A7J7QD48_9CHLO (S5A_REDUCTASE domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QD48_9CHLO)

HSP 1 Score: 79.7 bits (195), Expect = 5.030e-16
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 1
Query:    1 VKVVADEEKMSFRLDKANAGKFIDTGLWSHCRHPNYFGEMASARVLWFGMFIFCARGVLGTRGGWMAILGPLF 219
            V+  AD +K +F+++ AN GKFID GLWS+ R+PNYFGEM    ++W+GMFIFCA G+ G +    ++  P+F
Sbjct:  213 VEATADGQKFTFKMEPANNGKFIDRGLWSYARYPNYFGEM----MVWWGMFIFCAGGLQGPQLA--SVASPVF 279          
BLAST of mRNA_C-tenellus_contig10106.3.1 vs. uniprot
Match: A0A2D4T7L7_9GAMM (S5A_REDUCTASE domain-containing protein n=2 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A2D4T7L7_9GAMM)

HSP 1 Score: 76.6 bits (187), Expect = 5.000e-15
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 VKVVADEEKMSFRLDKANAGKFIDTGLWSHCRHPNYFGEMASARVLWFGMFIFCARGVLGTRGGWMAILGPLF 219
            ++V+AD +K  FR D ANAG+FI+ GLW+  RHPNYFGE+    +LW G+ +  A  + GT+  W+ +L PLF
Sbjct:  175 IEVIADRQKSRFREDSANAGQFINVGLWARSRHPNYFGEI----LLWAGIAVMAAPYLSGTQ--WVVLLSPLF 241          
BLAST of mRNA_C-tenellus_contig10106.3.1 vs. uniprot
Match: A0A2V0P741_9CHLO (S5A_REDUCTASE domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P741_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 8.030e-15
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 VKVVADEEKMSFRLDKANAGKFIDTGLWSHCRHPNYFGEMASARVLWFGMFIFCARGVLGTRGGWMAILGPLF 219
            ++ +AD +K +F++D AN G+FID+GLW++ R PNYFGEM     LW+G+FI C  G+ G +  +  +  PLF
Sbjct:  230 IEAIADGQKFAFKMDPANKGRFIDSGLWTYSRFPNYFGEM----TLWWGVFITCTSGLSGAQ--FATVASPLF 296          
BLAST of mRNA_C-tenellus_contig10106.3.1 vs. uniprot
Match: A0A8J2S9D2_9CRUS (Hypothetical protein n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2S9D2_9CRUS)

HSP 1 Score: 76.6 bits (187), Expect = 1.170e-14
Identity = 39/71 (54.93%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    7 VVADEEKMSFRLDKANAGKFIDTGLWSHCRHPNYFGEMASARVLWFGMFIFCARGVLGTRGGWMAILGPLF 219
            VVAD +K  FR D ANAGKFI+TGLWS  RHPNYFGE+    +LWFG+FI  A         ++ IL P+F
Sbjct:  764 VVADYQKSQFRSDPANAGKFINTGLWSLSRHPNYFGEI----LLWFGLFI-SASSTFTEWWEYLTILSPMF 829          
BLAST of mRNA_C-tenellus_contig10106.3.1 vs. uniprot
Match: A0A6A4VA12_AMPAM (S5A_REDUCTASE domain-containing protein n=3 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VA12_AMPAM)

HSP 1 Score: 74.7 bits (182), Expect = 1.970e-14
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    7 VVADEEKMSFRLDKANAGKFIDTGLWSHCRHPNYFGEMASARVLWFGMFIFCARGVLGTRGGWMAILGPLF 219
            V+AD +K  FR D AN G+FIDTGLWS  RHPNYFGE+    +LWFG+++  + G  G R   + +L PLF
Sbjct:  158 VIADYQKSVFRNDPANKGQFIDTGLWSISRHPNYFGEI----LLWFGLYVSASVGWSGRRH--LLVLCPLF 222          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10106.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIU1_ECTSI2.270e-2561.64S5A_REDUCTASE domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JH77_9PHAE1.080e-2261.64S5A_REDUCTASE domain-containing protein n=1 Tax=Ec... [more]
A0A7Y3RNS9_9PROT9.230e-1756.16DUF1295 domain-containing protein n=1 Tax=Parvular... [more]
A0A383WPW5_TETOB1.570e-1654.84S5A_REDUCTASE domain-containing protein n=1 Tax=Te... [more]
A0A0D2M5S2_9CHLO3.140e-1647.95S5A_REDUCTASE domain-containing protein n=1 Tax=Mo... [more]
A0A7J7QD48_9CHLO5.030e-1649.32S5A_REDUCTASE domain-containing protein n=1 Tax=Sc... [more]
A0A2D4T7L7_9GAMM5.000e-1547.95S5A_REDUCTASE domain-containing protein n=2 Tax=Ha... [more]
A0A2V0P741_9CHLO8.030e-1545.21S5A_REDUCTASE domain-containing protein n=1 Tax=Ra... [more]
A0A8J2S9D2_9CRUS1.170e-1454.93Hypothetical protein n=1 Tax=Daphnia galeata TaxID... [more]
A0A6A4VA12_AMPAM1.970e-1452.11S5A_REDUCTASE domain-containing protein n=3 Tax=Am... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10106contigC-tenellus_contig10106:4574..5491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FIU1
PFAMsDUF1295
Model size219
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.94e-23
EggNOG OGsCOG3752@1|root,KOG4650@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF1295
Ec32 orthologEc-20_002880.1
Descriptionoxidoreductase activity, acting on the CH-CH group of donors
Cds size192
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789115.0943093-CDS-C-tenellus_contig10106:4573..46601680789115.0943093-CDS-C-tenellus_contig10106:4573..4660Choristocarpus tenellus KU2346CDSC-tenellus_contig10106 4574..4660 -
1680789115.1065888-CDS-C-tenellus_contig10106:5359..54641680789115.1065888-CDS-C-tenellus_contig10106:5359..5464Choristocarpus tenellus KU2346CDSC-tenellus_contig10106 5360..5464 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789115.1187057-UTR-C-tenellus_contig10106:5464..54911680789115.1187057-UTR-C-tenellus_contig10106:5464..5491Choristocarpus tenellus KU2346UTRC-tenellus_contig10106 5465..5491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10106.3.1prot_C-tenellus_contig10106.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10106 4574..5464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10106.3.1

>prot_C-tenellus_contig10106.3.1 ID=prot_C-tenellus_contig10106.3.1|Name=mRNA_C-tenellus_contig10106.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=64bp
MSFRLDKANAGKFIDTGLWSHCRHPNYFGEMASARVLWFGMFIFCARGVL
GTRGGWMAILGPLF
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mRNA from alignment at C-tenellus_contig10106:4574..5491-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10106.3.1 ID=mRNA_C-tenellus_contig10106.3.1|Name=mRNA_C-tenellus_contig10106.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=918bp|location=Sequence derived from alignment at C-tenellus_contig10106:4574..5491- (Choristocarpus tenellus KU2346)
GTGAAGGTGGTAGCAGACGAGGAAAAGATGTCATTTCGCCTTGACAAGGC CAATGCTGGGAAGTTCATTGACACAGGCCTCTGGTCGCATTGCCGACACC CCAACTACTTTGGAGAGATGGCAAGTGCTCGAGTCAGGGAGTCTTTCATA GTGGAACGTGTTGTATCAAGTGCAGAGCTTTGAAATGAAATGAAAGAGAT GAGAAATATTTGACACTTTGAAGTACTTTGCGATTGCTGGTAGGCGTTTG TATTCCAGATTTAGCATTACTTGCAGATATTACTGCTGAGACTCCTGGCA TTTACACAGTCTTTTCTACCTTCAACAACCTCGCAGCACCTTTGCAGTCC CATCCCTCCATCAATGACTGACAGTATTCACCTCTATTTATTCCTTTGTC GCTTGCTACCTAATGCAACAGTGGGAAACCATGACGAACATGCTTGCAAA TAGACCTCTCCTCCCACCACCACCCCCTCCACCTCAACAGACCAAGCAAT AATGCACCTGGATGATGCCCTGAGCACCTTGATCTGAACCTTCACATCCA AGACCCTACTCCAAGCCTTCCCTTAGTATGCCACCACCCGGGCCAACCCG AACCTAATTCATCGCATATCCCAACACTCGCTTGTATAACATGTTGAGGC ATCTTATCCCCCCTCTCTGGCAGCTGTTTCCGTTCATTAATCACTCTCCT GTCTTCCCTTCTTCTTCGCCCTGTTTACGGGCAATGCCGCCCTTCCTGTA CTCTTTGTCTCTAGCTACCTACCTGTGTTCATCACTCCTCCAACAGTTTC TACTCTGTTGTACTGTATCTTGCGATCACAGGTTCTGTGGTTTGGTATGT TTATTTTTTGTGCTCGGGGTGTGCTGGGAACCAGGGGTGGGTGGATGGCT ATTCTGGGACCCCTGTTT
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Coding sequence (CDS) from alignment at C-tenellus_contig10106:4574..5491-

>mRNA_C-tenellus_contig10106.3.1 ID=mRNA_C-tenellus_contig10106.3.1|Name=mRNA_C-tenellus_contig10106.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=192bp|location=Sequence derived from alignment at C-tenellus_contig10106:4574..5491- (Choristocarpus tenellus KU2346)
ATGTCATTTCGCCTTGACAAGGCCAATGCTGGGAAGTTCATTGACACAGG
CCTCTGGTCGCATTGCCGACACCCCAACTACTTTGGAGAGATGGCAAGTG
CTCGAGTTCTGTGGTTTGGTATGTTTATTTTTTGTGCTCGGGGTGTGCTG
GGAACCAGGGGTGGGTGGATGGCTATTCTGGGACCCCTGTTT
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