mRNA_C-tenellus_contig10098.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10098.5.1
Unique NamemRNA_C-tenellus_contig10098.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10098.5.1 vs. uniprot
Match: A0A6H5K3C7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C7_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.480e-13
Identity = 125/480 (26.04%), Postives = 173/480 (36.04%), Query Frame = 1 
Query:    7 VVRLCKMHGLEATKSA--AGRDG-RVPVLPIVIA------EEANWKTGWPLPP--ERARASGVLGVIPQPSHLQVSSSRLFSPEEGWKPIAKSAVAAISKSSLGGGGTMVVEVDAMSSGRPQSLLLPLYVDPEGDEGERKSVKEKIIAMLAMLRFACFYLASRSTSGTSPRTLRMDTIGGDRLPQGMLGMDQAMWGLMALREAWNGRVAVSILSGAMR-PSVMKNERTRNYGSHVAGMGEEVVLIDARAAILSSVLTWAQQCKQDEEREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHAKQHRSSVPSGGGVGMREERNGDSQDVTAHVGSAEVWGGSGWLRGDGERNGIKGGEGVVTTRPDTQLLDAMGLVGQTLRKVLSPGWLLLGGVVRPIGSACDWLGSNWRKGVRDGGGNRTDEDKVLQKVLVYDTDDAGSF-----------WYVKEQVRCLKGRLRN 1377
            VVRLC   GLE    A  AGR G R P+LP+V++          W++  P P        S V  V P+P + ++   R+F  +E W+P+  SA+A    +S      +V+E DA+SS  PQ+L+ P                                          PR +     GG+    G LG DQA+WGL  LR A   R       GA R  SV+  ER            E  V IDARAA+L SVL WA QC+ D++                                               A        + G V   EE   D+  V           G    R D +  G      V       ++L  +  +G+ +R   +    +   + R +G+   WL  N R+         T  D  +++VLVYDT D  SF           W V+ Q      RLRN
Sbjct:   50 VVRLCGARGLEPALVAPVAGRGGYRTPILPVVVSGGGFRHRSGGWRSSDPAPCFLSEGALSAVAKVSPRPCYYRIGGDRVFC-QEAWQPVV-SALAEAGATSDSRERVLVMEADAVSSDAPQALMSP------------------------------------------PREVE----GGE----GRLGEDQAVWGLAMLRRALEERRREQ---GAGRLASVLLAERR-------LVCAEGSVSIDARAALLLSVLCWAGQCQGDDDA--------------------------------------LADEATTAAAVAGVLGTTEGSVAPGEESGADTAAVAEEEEDTMGVDGDATARADDDEQGRPASTAV-------RVLVVLERMGRGVRVAAARLGQVRSAMGRSLGAVSAWLAKNARR-------RPTTPDAAIKRVLVYDTHDDESFRWLAAKMLKVGWTVERQT---SERLRN 412
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BLAST of mRNA_C-tenellus_contig10098.5.1 vs. uniprot
Match: D8LF10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF10_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 6.360e-13
Identity = 85/267 (31.84%), Postives = 115/267 (43.07%), Query Frame = 1 
Query:    7 VVRLCKMHGLEATKSA--AGRDG-RVPVLPIVIA------EEANWKTGWPLPP--ERARASGVLGVIPQPSHLQVSSSRLFSPEEGWKPIAKSAVAAISKSSLGGGGTMVVEVDAMSSGRPQSLLLPLYVDPEGDEGERKSVKEKIIAMLAMLRFACFYLASRSTSGTSPRTLRMDTIGGDRLPQGMLGMDQAMWGLMALREAWNGRVAVSILSGAMR-PSVMKNERTRNYGSHVAGMGEEVVLIDARAAILSSVLTWAQQCKQDEE 771
            VVRLC   GLE    A  AGR G R P+LP+V++          W++  P          S V  V P+P + ++   R+F   E W+P+  SA+A    +S      +V+E DA+SS  PQ+L+ P                                          PR ++    GG+    G LG DQA+WGL  LR A   R       GA R  SV+  ER         G     V IDARAA+L SVL+WA+QC  D++
Sbjct:  160 VVRLCGARGLEPALVAPMAGRGGYRTPILPVVVSGGGFGHRSGGWRSSDPASSFLSEGALSAVAKVSPRPCYYRIGGDRVFC-REAWQPVV-SALAEAGATSDSREIVLVMEADAVSSDAPQTLMSP------------------------------------------PREVK----GGE----GRLGEDQAVWGLAMLRRALEERRRER---GAGRLASVLLAERRLVCAE---GSTTTTVSIDARAALLLSVLSWAEQCHGDDD 368
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10098.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3C7_9PHAE1.480e-1326.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF10_ECTSI6.360e-1331.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10098contigC-tenellus_contig10098:1291..3846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2161
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_006280.1
Cds size1356
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789114.6563048-UTR-C-tenellus_contig10098:1290..13141680789114.6563048-UTR-C-tenellus_contig10098:1290..1314Choristocarpus tenellus KU2346UTRC-tenellus_contig10098 1291..1314 +
1680789114.6796923-UTR-C-tenellus_contig10098:2670..33671680789114.6796923-UTR-C-tenellus_contig10098:2670..3367Choristocarpus tenellus KU2346UTRC-tenellus_contig10098 2671..3367 +
1680789114.6897268-UTR-C-tenellus_contig10098:3762..38461680789114.6897268-UTR-C-tenellus_contig10098:3762..3846Choristocarpus tenellus KU2346UTRC-tenellus_contig10098 3763..3846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789114.6691823-CDS-C-tenellus_contig10098:1314..26701680789114.6691823-CDS-C-tenellus_contig10098:1314..2670Choristocarpus tenellus KU2346CDSC-tenellus_contig10098 1315..2670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10098.5.1prot_C-tenellus_contig10098.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10098 1315..2670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10098.5.1

>prot_C-tenellus_contig10098.5.1 ID=prot_C-tenellus_contig10098.5.1|Name=mRNA_C-tenellus_contig10098.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=452bp
MHGLEATKSAAGRDGRVPVLPIVIAEEANWKTGWPLPPERARASGVLGVI
PQPSHLQVSSSRLFSPEEGWKPIAKSAVAAISKSSLGGGGTMVVEVDAMS
SGRPQSLLLPLYVDPEGDEGERKSVKEKIIAMLAMLRFACFYLASRSTSG
TSPRTLRMDTIGGDRLPQGMLGMDQAMWGLMALREAWNGRVAVSILSGAM
RPSVMKNERTRNYGSHVAGMGEEVVLIDARAAILSSVLTWAQQCKQDEER
EIEARARAKAEVMAAKAKAAEARAAAAAASATAAAAAAGGGGGGVHAKQH
RSSVPSGGGVGMREERNGDSQDVTAHVGSAEVWGGSGWLRGDGERNGIKG
GEGVVTTRPDTQLLDAMGLVGQTLRKVLSPGWLLLGGVVRPIGSACDWLG
SNWRKGVRDGGGNRTDEDKVLQKVLVYDTDDAGSFWYVKEQVRCLKGRLR
N*
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mRNA from alignment at C-tenellus_contig10098:1291..3846+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10098.5.1 ID=mRNA_C-tenellus_contig10098.5.1|Name=mRNA_C-tenellus_contig10098.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2556bp|location=Sequence derived from alignment at C-tenellus_contig10098:1291..3846+ (Choristocarpus tenellus KU2346)
AGCCCAGTTGTTCGACTTTGCAAGATGCATGGATTGGAGGCCACCAAGTC
AGCAGCAGGAAGGGATGGGCGAGTACCTGTTCTCCCCATTGTAATAGCAG
AAGAGGCTAACTGGAAAACAGGATGGCCATTGCCACCTGAACGGGCTCGT
GCCAGTGGGGTGCTGGGGGTAATACCCCAACCCTCACATCTCCAGGTTTC
CTCTAGTAGACTTTTCTCGCCAGAGGAGGGATGGAAGCCGATAGCAAAAT
CAGCTGTTGCAGCAATTTCAAAATCGTCGTTGGGAGGGGGGGGAACAATG
GTGGTAGAGGTGGATGCAATGTCATCAGGGAGGCCACAGTCCCTCCTACT
TCCCTTGTATGTCGATCCAGAAGGAGATGAAGGTGAAAGGAAGAGTGTGA
AAGAAAAGATAATAGCAATGTTAGCAATGTTAAGGTTTGCTTGCTTTTAT
CTTGCTTCCAGGTCTACATCAGGGACTTCTCCCAGGACTTTGAGGATGGA
CACAATTGGAGGAGACCGACTTCCCCAAGGAATGCTTGGTATGGACCAGG
CAATGTGGGGTTTGATGGCACTGAGGGAGGCGTGGAATGGTCGTGTTGCT
GTGAGCATTCTCTCTGGTGCCATGAGGCCGTCTGTCATGAAGAACGAAAG
AACCCGAAATTACGGAAGCCATGTGGCAGGTATGGGAGAGGAAGTGGTTT
TGATAGATGCCAGAGCGGCTATACTATCCTCTGTGCTCACCTGGGCTCAG
CAATGTAAACAAGATGAAGAGAGAGAGATAGAGGCCAGGGCCAGGGCCAA
GGCTGAGGTTATGGCCGCTAAGGCAAAAGCAGCAGAAGCCAGGGCAGCTG
CGGCAGCTGCTTCGGCTACTGCTGCTGCTGCAGCAGCAGGAGGAGGAGGA
GGAGGGGTACATGCTAAGCAGCATAGATCAAGTGTACCCAGTGGTGGAGG
AGTCGGCATGAGGGAGGAAAGGAATGGGGACTCTCAGGATGTCACTGCCC
ATGTTGGCTCTGCAGAGGTTTGGGGGGGGAGTGGCTGGTTGAGGGGCGAT
GGGGAGAGAAATGGGATCAAAGGTGGGGAAGGAGTTGTTACTACAAGGCC
TGATACTCAACTTCTAGATGCGATGGGCCTCGTGGGTCAAACGCTTCGGA
AAGTTCTTTCTCCAGGTTGGCTTCTACTTGGAGGCGTTGTGCGTCCCATT
GGATCAGCTTGTGATTGGCTGGGCAGCAACTGGAGGAAAGGAGTGAGGGA
TGGAGGTGGTAACAGGACTGATGAGGACAAGGTTTTGCAGAAGGTGCTCG
TTTACGACACAGATGATGCTGGCTCTTTTTGGTATGTGAAAGAGCAGGTG
AGATGTTTGAAGGGGAGGCTAAGAAATTGATCCCTGGTGAGTCATGATTA
CACTGCTTTATGTAGGGGGCAAGCAGGAGAGGGTTATATACTCAAGCTTC
CCCTGGACACCAAGAATGTAGCAATATAAGGCGGTGTGGTTCTTGGTGAA
GGTGTTCCTCAAAGTCTACGTATGCAAGGGTAGGTGTTCTTTTTTGTGTG
CACGTGCTTGTGTGTGATATTTTGGCCTCTTGAAGGATGTAATGATGTTA
AGTCAAGGACACGAAAAACACGAGGTAGGGGGGCTCTGTCTGATTGGGCA
AAAACCCTCTCCTTTTGCTTGTTAAGAAGAGATCCTGGAGCCTCTGGAGG
TGTCAGAGAGTTCACATGCAAACAGGAGTCCCCGGAGAACAGCATTCGCT
GTAGATGAGGTCTACAGTAAACCTCTCTGAACTCGCTTTACCTACAGATG
GCATCCCAAGGGTGGACTGTGCTGCTCCCGCCGAGTGATTCACAGGGTCT
GAATCAAGCAGTCGCAGGAGGAAAGGCGTCATCTTCTAATAGACCTGAGA
GTACACTTGGTTCCCTCAATGGAGCAAGGCAGCAAACAACAATGTTGGTG
GTAGGCAATGGGAGTTCCTATGGTGCTGGTGGCGATGCTGGTGCTTCACC
TCCTGTCCTGGTGCACCGACACACAGATGAGGCCACCCTGAGGGTGGCTG
CCCAGCATCTTGCCGGACCTGGTCAAGGTGCAACCCATGTAGTTGAACTG
CAGGGATGAGAATTCATGACGACTTGTGTGAGTTTTTCTTCAAGGCGAAC
TATACAGTGTGAATTTTCCCTCTTGTGTGTGTTGTTCGATTGTCAGCTCC
AGACTAAAATTGCCCTTTCTGCCCCCAATGCCATATCCCGTTTCAACTGG
ATTTCCCTCTTTTCACAACAGCTCTACTGTGGACCCAATCACTCCCTTCT
CTATCTCTGTTTACTCTGGCACTAGCCCTAGTCCATCAACTGGGATCGTG
TGTTGTGTTGTTGAGTTCAAACAAGGACTATGTGAAGGGGTAAGCAGCTC
TCAAAGGACACCCTTTTTCCTCTCCCTCCTCTCCTGCGCTCGATTTTCGT
AATCAACTGCTTGTGCAACCAGCTCCACCTGTGTGTGTGGTGGTTCACAA
CTGGAACTGCGGGAGAGAAGCCTATGGTCTTCTCATGAATGCGTCTAAGG
CAAGAA
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Coding sequence (CDS) from alignment at C-tenellus_contig10098:1291..3846+

>mRNA_C-tenellus_contig10098.5.1 ID=mRNA_C-tenellus_contig10098.5.1|Name=mRNA_C-tenellus_contig10098.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1356bp|location=Sequence derived from alignment at C-tenellus_contig10098:1291..3846+ (Choristocarpus tenellus KU2346)
ATGCATGGATTGGAGGCCACCAAGTCAGCAGCAGGAAGGGATGGGCGAGT
ACCTGTTCTCCCCATTGTAATAGCAGAAGAGGCTAACTGGAAAACAGGAT
GGCCATTGCCACCTGAACGGGCTCGTGCCAGTGGGGTGCTGGGGGTAATA
CCCCAACCCTCACATCTCCAGGTTTCCTCTAGTAGACTTTTCTCGCCAGA
GGAGGGATGGAAGCCGATAGCAAAATCAGCTGTTGCAGCAATTTCAAAAT
CGTCGTTGGGAGGGGGGGGAACAATGGTGGTAGAGGTGGATGCAATGTCA
TCAGGGAGGCCACAGTCCCTCCTACTTCCCTTGTATGTCGATCCAGAAGG
AGATGAAGGTGAAAGGAAGAGTGTGAAAGAAAAGATAATAGCAATGTTAG
CAATGTTAAGGTTTGCTTGCTTTTATCTTGCTTCCAGGTCTACATCAGGG
ACTTCTCCCAGGACTTTGAGGATGGACACAATTGGAGGAGACCGACTTCC
CCAAGGAATGCTTGGTATGGACCAGGCAATGTGGGGTTTGATGGCACTGA
GGGAGGCGTGGAATGGTCGTGTTGCTGTGAGCATTCTCTCTGGTGCCATG
AGGCCGTCTGTCATGAAGAACGAAAGAACCCGAAATTACGGAAGCCATGT
GGCAGGTATGGGAGAGGAAGTGGTTTTGATAGATGCCAGAGCGGCTATAC
TATCCTCTGTGCTCACCTGGGCTCAGCAATGTAAACAAGATGAAGAGAGA
GAGATAGAGGCCAGGGCCAGGGCCAAGGCTGAGGTTATGGCCGCTAAGGC
AAAAGCAGCAGAAGCCAGGGCAGCTGCGGCAGCTGCTTCGGCTACTGCTG
CTGCTGCAGCAGCAGGAGGAGGAGGAGGAGGGGTACATGCTAAGCAGCAT
AGATCAAGTGTACCCAGTGGTGGAGGAGTCGGCATGAGGGAGGAAAGGAA
TGGGGACTCTCAGGATGTCACTGCCCATGTTGGCTCTGCAGAGGTTTGGG
GGGGGAGTGGCTGGTTGAGGGGCGATGGGGAGAGAAATGGGATCAAAGGT
GGGGAAGGAGTTGTTACTACAAGGCCTGATACTCAACTTCTAGATGCGAT
GGGCCTCGTGGGTCAAACGCTTCGGAAAGTTCTTTCTCCAGGTTGGCTTC
TACTTGGAGGCGTTGTGCGTCCCATTGGATCAGCTTGTGATTGGCTGGGC
AGCAACTGGAGGAAAGGAGTGAGGGATGGAGGTGGTAACAGGACTGATGA
GGACAAGGTTTTGCAGAAGGTGCTCGTTTACGACACAGATGATGCTGGCT
CTTTTTGGTATGTGAAAGAGCAGGTGAGATGTTTGAAGGGGAGGCTAAGA
AATTGA
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