mRNA_C-tenellus_contig10096.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10096.1.1
Unique NamemRNA_C-tenellus_contig10096.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10096.1.1 vs. uniprot
Match: A0A6H5L0T1_9PHAE (PAP-associated domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T1_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.280e-26
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 1
Query:    7 RFDPLFIEDPLNFSNNVGRNCFRIYQIQRAWSDAHASLTRALDDDLQSGC----LLKCIISDPEP 189
            RFDPLFIEDP+N SNNVG NCFR+YQIQRAWSDAHASL RALDD+ Q       LL+CIISDPEP
Sbjct:  166 RFDPLFIEDPMNLSNNVGHNCFRVYQIQRAWSDAHASLARALDDESQLRASPYRLLRCIISDPEP 230          
BLAST of mRNA_C-tenellus_contig10096.1.1 vs. uniprot
Match: A0A835ZHQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ3_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.870e-17
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1
Query:    7 RFDPLFIEDPLNFSNNVGRNCFRIYQIQRAWSDAHASLTRALD 135
            RFDPLFIEDPL   NNVGRNCFRIYQI+RAWSDAHA+LTRA+D
Sbjct:  297 RFDPLFIEDPLALGNNVGRNCFRIYQIKRAWSDAHAALTRAMD 339          
BLAST of mRNA_C-tenellus_contig10096.1.1 vs. uniprot
Match: A0A7R9ZBE5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBE5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.400e-14
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1
Query:   10 FDPLFIEDPLNFSNNVGRNCFRIYQIQRAWSDAHASLTRALDDDLQSGCLLKC 168
            FDPLF+EDP+N  NNVGRN FRI+Q+QRA+SDAH +L  +L+ D  S   L C
Sbjct:   41 FDPLFVEDPMNAGNNVGRNAFRIFQVQRAFSDAHRALVASLEWDTNSTGGLNC 93          
BLAST of mRNA_C-tenellus_contig10096.1.1 vs. uniprot
Match: A0A448Z158_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z158_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.080e-14
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    4 ARFDPLFIEDPLNFSNNVGRNCFRIYQIQRAWSDAHASLTRALDDDLQSGC------LLKCIISD 180
            + FDPLF+EDPL+ +NNVGRN FRI Q+QRA+SDAH +L  +LD DLQS        LLKC++ +
Sbjct: 1549 STFDPLFVEDPLSATNNVGRNAFRINQVQRAFSDAHRALVASLDWDLQSADPSDKYPLLKCLLGN 1613          
BLAST of mRNA_C-tenellus_contig10096.1.1 vs. uniprot
Match: A0A7S2Q1J0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q1J0_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 5.100e-13
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    4 ARFDPLFIEDPLNFSNNVGRNCFRIYQIQRAWSDAHASLTRALDDDLQSGC---------LLKCIISDPE 186
             +FDP+++EDPLN  NNVGRN FRI+Q+QRA+SDAH +L  AL+ D+ S           LLKC++ + +
Sbjct: 1422 GKFDPIWVEDPLNPGNNVGRNAFRIFQVQRAFSDAHRALVAALEWDINSMSEFGEDGEYPLLKCLLQNED 1491          
BLAST of mRNA_C-tenellus_contig10096.1.1 vs. uniprot
Match: A0A7S2RE21_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RE21_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.300e-12
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    4 ARFDPLFIEDPLNFSNNVGRNCFRIYQIQRAWSDAHASLTRALDDDLQSG 153
             +FDPL IEDPLN  NNVGRNCFRI QIQR +SDA   + RA+D    SG
Sbjct:   42 CQFDPLHIEDPLNEGNNVGRNCFRIIQIQRVFSDARNKVFRAMDFQSTSG 91          
BLAST of mRNA_C-tenellus_contig10096.1.1 vs. uniprot
Match: A0A7S2U5F7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5F7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.420e-12
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   10 FDPLFIEDPLNFSNNVGRNCFRIYQIQRAWSDAHASLTRALD------DDLQSGC---LLKCIISDPE 186
            FDPLFIEDPL+  NNVGRN FRI+Q+QRA++DAH +L  +L+       DL  G    LLKC++ + +
Sbjct: 1111 FDPLFIEDPLSAGNNVGRNAFRIFQVQRAFADAHRALVASLEWDMGSEGDLNDGSKYPLLKCLLQNED 1178          
BLAST of mRNA_C-tenellus_contig10096.1.1 vs. uniprot
Match: A0A6U1NV11_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A6U1NV11_CYCTE)

HSP 1 Score: 67.0 bits (162), Expect = 2.910e-12
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   10 FDPLFIEDPLNFSNNVGRNCFRIYQIQRAWSDAHASLTRALD------DDLQSGC---LLKCII 174
            FDPLF+EDPL+  NNVGRN FRI+Q+QRA+SDAH +L  +L+       DL S     LL+C++
Sbjct:   93 FDPLFVEDPLSVGNNVGRNAFRIFQVQRAFSDAHRALVASLEWEHSSTGDLNSETDYPLLQCLL 156          
BLAST of mRNA_C-tenellus_contig10096.1.1 vs. uniprot
Match: A0A7R9WW00_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WW00_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 7.430e-12
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1
Query:   10 FDPLFIEDPLNFSNNVGRNCFRIYQIQRAWSDAHASLTRALDDDLQS 150
            FDPLF+EDPL+  NNVGRN FR++QIQRA+SDAH +L  +L+ D  S
Sbjct:  117 FDPLFVEDPLSPGNNVGRNAFRVFQIQRAFSDAHRALLASLEWDSHS 163          
BLAST of mRNA_C-tenellus_contig10096.1.1 vs. uniprot
Match: A0A7S2PBI3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PBI3_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.490e-11
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 1
Query:   10 FDPLFIEDPLNFSNNVGRNCFRIYQIQRAWSDAHASLTRALDDDLQSG-----C---LLKCIISDPE 186
            FDPLF+EDPL+ SNN+GRN FRI+Q++RA++DAH +L   L+ D+        C   LLKC++ + +
Sbjct:  235 FDPLFVEDPLSESNNIGRNAFRIFQVKRAFADAHRALIATLEWDMHDTPEDEKCQYPLLKCLLQNED 301          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10096.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0T1_9PHAE1.280e-2676.92PAP-associated domain-containing protein n=1 Tax=E... [more]
A0A835ZHQ3_9STRA1.870e-1786.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9ZBE5_9STRA2.400e-1460.38Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A448Z158_9STRA3.080e-1456.92Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2Q1J0_9STRA5.100e-1348.57Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2RE21_9STRA2.300e-1264.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2U5F7_9STRA2.420e-1251.47Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6U1NV11_CYCTE2.910e-1253.13Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7R9WW00_9STRA7.430e-1263.83Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2PBI3_9STRA1.490e-1147.76Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10096contigC-tenellus_contig10096:700..897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4787.PITG_06913T0
PFAMsNTP_transf_2,PAP_assoc
Model size198
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.06e-12
EggNOG OGsCOG5260@1|root,KOG1906@2759|Eukaryota,3QEC0@4776|Peronosporales
DescriptionNucleotidyltransferase domain
Cds size198
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789114.6267734-CDS-C-tenellus_contig10096:699..8971680789114.6267734-CDS-C-tenellus_contig10096:699..897Choristocarpus tenellus KU2346CDSC-tenellus_contig10096 700..897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10096.1.1prot_C-tenellus_contig10096.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10096 700..897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10096.1.1

>prot_C-tenellus_contig10096.1.1 ID=prot_C-tenellus_contig10096.1.1|Name=mRNA_C-tenellus_contig10096.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=66bp
MARFDPLFIEDPLNFSNNVGRNCFRIYQIQRAWSDAHASLTRALDDDLQS
GCLLKCIISDPEPES*
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mRNA from alignment at C-tenellus_contig10096:700..897+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10096.1.1 ID=mRNA_C-tenellus_contig10096.1.1|Name=mRNA_C-tenellus_contig10096.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=198bp|location=Sequence derived from alignment at C-tenellus_contig10096:700..897+ (Choristocarpus tenellus KU2346)
ATGGCCAGGTTTGACCCTCTCTTCATTGAAGACCCCCTAAATTTCAGCAA CAATGTGGGGCGCAATTGTTTCCGCATTTACCAGATACAAAGGGCATGGA GTGATGCCCATGCCTCACTGACCAGAGCGCTAGACGATGACCTTCAGTCA GGCTGCCTACTCAAGTGCATCATATCCGACCCTGAGCCGGAGTCTTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10096:700..897+

>mRNA_C-tenellus_contig10096.1.1 ID=mRNA_C-tenellus_contig10096.1.1|Name=mRNA_C-tenellus_contig10096.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=198bp|location=Sequence derived from alignment at C-tenellus_contig10096:700..897+ (Choristocarpus tenellus KU2346)
ATGGCCAGGTTTGACCCTCTCTTCATTGAAGACCCCCTAAATTTCAGCAA
CAATGTGGGGCGCAATTGTTTCCGCATTTACCAGATACAAAGGGCATGGA
GTGATGCCCATGCCTCACTGACCAGAGCGCTAGACGATGACCTTCAGTCA
GGCTGCCTACTCAAGTGCATCATATCCGACCCTGAGCCGGAGTCTTGA
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