mRNA_C-tenellus_contig1009.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1009.1.1
Unique NamemRNA_C-tenellus_contig1009.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1009.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1009contigC-tenellus_contig1009:14..7210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1963
Hectar predicted targeting categoryother localisation
Exons6
Cds size1752
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1009.1.1prot_C-tenellus_contig1009.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1009 14..6999 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789114.3346572-CDS-C-tenellus_contig1009:13..831680789114.3346572-CDS-C-tenellus_contig1009:13..83Choristocarpus tenellus KU2346CDSC-tenellus_contig1009 14..83 -
1680789114.3465233-CDS-C-tenellus_contig1009:345..5911680789114.3465233-CDS-C-tenellus_contig1009:345..591Choristocarpus tenellus KU2346CDSC-tenellus_contig1009 346..591 -
1680789114.354863-CDS-C-tenellus_contig1009:2904..36301680789114.354863-CDS-C-tenellus_contig1009:2904..3630Choristocarpus tenellus KU2346CDSC-tenellus_contig1009 2905..3630 -
1680789114.3631008-CDS-C-tenellus_contig1009:4535..48941680789114.3631008-CDS-C-tenellus_contig1009:4535..4894Choristocarpus tenellus KU2346CDSC-tenellus_contig1009 4536..4894 -
1680789114.3761845-CDS-C-tenellus_contig1009:6131..62701680789114.3761845-CDS-C-tenellus_contig1009:6131..6270Choristocarpus tenellus KU2346CDSC-tenellus_contig1009 6132..6270 -
1680789114.3845701-CDS-C-tenellus_contig1009:6787..69991680789114.3845701-CDS-C-tenellus_contig1009:6787..6999Choristocarpus tenellus KU2346CDSC-tenellus_contig1009 6788..6999 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789114.3930583-UTR-C-tenellus_contig1009:6999..72101680789114.3930583-UTR-C-tenellus_contig1009:6999..7210Choristocarpus tenellus KU2346UTRC-tenellus_contig1009 7000..7210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1009.1.1

>prot_C-tenellus_contig1009.1.1 ID=prot_C-tenellus_contig1009.1.1|Name=mRNA_C-tenellus_contig1009.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=584bp
MSRGDREESGTEDQHSREAEKGRKRDRSKVRSKSTERDRERSRGKVREKG
RARSGDRGSDGSDDKSRDPERQSTSQRGSERKNGTKDSNENSNSLELETN
SGEGRVHGTSVKSGSAKVSKSSMKSSSSRSSKSGKSGKSGKSSKTTDNSH
KVDNNGHGSMGGSGAIEGHGHDVGTFKSSPSHGRDGKSSHGRGSREGSSS
TSKSRSKSHSKSHSKSHANKDQSKEQFKGEDSDARDRGTAGGVTDGERND
KGEGHDPHQSQQSKSRAGGRDSDSSKGSKSSKGKHKDKEKDKKEKDKTKR
SRKEHKDDKHKDAEKNKSRDRDRDRDNSRDADRDRDKSRDRDNSRDADRD
RDKSRDNSRDRDRDRVRDRDRAGEKDKEHDYDRGRGRGYDFDREHGRERD
YERGRHWGRDDNRDDRRDRRDSRDRDLRDRDSRDMEAARERGWSKKSTGG
DGRGSRSSIPWDGSPVGFYGPGTWQASSRDKARVSAERAPRKGSRDRDRG
DRGDKGARDNKLNKDKDKEKDSEDNPNPGPTVGGNGSGTLAGSAVPQGLS
PTKPIGLNRTRGDDGGGIRGRSRGGPGRGGMDGM
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mRNA from alignment at C-tenellus_contig1009:14..7210-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1009.1.1 ID=mRNA_C-tenellus_contig1009.1.1|Name=mRNA_C-tenellus_contig1009.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=7197bp|location=Sequence derived from alignment at C-tenellus_contig1009:14..7210- (Choristocarpus tenellus KU2346)
CTGAACTGTGGAGACAGGGACCAGGTACCTGTGTCTCCAACATTACATCA GTCAGCGCGAAGATGCCCTGTGCAGGATATAGTTGGTGGGTATGACCGTA TTAATCGTGATAGGTCACGGTCTTACTTTGTATGCTGTCGAAGGGAACTG TTTGGAGGGTGAGGGCAGGAAGAGAGGCGGCGCCTATCTGTTTTGAATTG CCACTAGGATAATGTCACGTGGGGACAGGGAGGAGAGTGGAACGGAAGAT CAGCATAGTCGGGAAGCGGAGAAGGGTCGGAAACGGGATCGTAGTAAAGT GCGAAGCAAGAGCACAGAGAGAGATAGAGAACGGAGCAGAGGTAAGGTTC GCGAAAAGGGAAGAGCAAGATCTGGTGATCGTGGAAGTGACGGGAGCGAC GACAAATCCAGGGATCCTGAAAGGCCAGTGCTGTTATGGAATCTTTCTCA AATGATGAAACCTACACGTTAGCTTTTACTCATTGGTCAAGCGGTTGACT CGCACGTGCATGATGTGTACAGCTACCTCATGGCACCTACTCGTTGGTAG GTACTGCACATGGGTATGCGTCAATGCAAACCATTGAATGCCAAAGTCAT GGTCAATAAGTACTGCAGCAGAATGCGTGGCTCGTAGTTTCTCCAATATT TTACCATCGAAGCAAGCATTGCTTGTAAGTCGGGGGATAGAAGGGTAAGG GGTTAGTTAATAGGTGCATCGCTGCACCAAACACGTTAGTCTTGAGATAA TGCTGGCAAATCAACTTGGTGCGTAAATGTGTTTTCAAGAGCTTCTCCAG GAGTCTTGAGTAATGAGCAGTGTGCTTACGATGCTTATGTATTGTGTTGG GTGATGCTCATGTGGTGGCATGTTTTGATTGACGACTATTGAGTTGGAGT TGCTGCCTTGGGTTAACTTGCCCTTTATTGCATGTAACAGACAGAGTACT TCACAACGAGGGAGTGAAAGGAAGAATGGAACGAAGGACTCCAATGAGAA CAGCAACAGCCTTGAGCTGGAGACCAACTCTGGGGAGGGCAGGGTGCATG GGACATCAGTAAAGTCAGGAAGTGCCAAGGTAGCTTAGAGTATGAGTGCC ACGAAGAAGTACACCCAGGTTGTGAGTCCCAAATGATTGTCACTTACTTT TGTTTTGCCAAGTTTATTTCTTGAGCAGTGCCGTGTTTGTAATAGTCTAC TTGTTCAATACTATTTTTTTCTCAGTACATTGAAGTGTGACAATACAAAG TATTTAAGTACGTGCACCAATACATAAGCTACACTGAAGAGGAGAGGGTG GCTAAAACAAACACTATTCATGGACTGATGCTAACTTTGATCATTGTTGT GCTCATAAACCCGTTGCTAATACACCAATACATCAACAAACGCACTTGAG TGGTACAGTACAGGAATACAGTTGGAATACAGTTGGAATACAGTTGTAGT GTGCAAGCTGTTTGATGAGGCTACGTTTCTACATGTATTTCGTTTTTTTT TTTGTTTAAATTTGTTTCGTTTTTTTCGTTTGATTGATTGCTTTACCGGG GAAGAGCTGCAAATGATGTATATGACCACAGTTTGTGATGTATATGAGCG CTCCCTTTCTTCTGTTTGCAGCAAGGTATTGCCATCCACACTGGATTATA TGTAGGTTAGGGTTAGGATCAGCAGTGCTTTCTTGGTATTATTTGTATAA ATATTGGGGAAGCATGTAAATGATGTATCTGTGACTGGTTCCAATTCATT TCAATCATTCGCCATTAAGATTAATTATACATTCCGAGGTGATAGAGCAG TATGTATTAGAACCTATTCAATGTATTAGAACCTATTCAATGTATTGTCA CATTACACTTGAGGAAGAAAAGCAGGCGATGTTTGGCAATAGCTAGATTG TGATTGGCATGGTGTATATTGAGTATCGTGGCCATTGCATACCTTTTCAA CATCTGTTCCTAACCCTAAATCTGATGTGCTAGTAAACACCTTCCCGGTC CCCTTTCACACTTTTAGTATGTAGTCTGGACTACATGGAAGCTCTCTTGC GCAATCACACACTGCAATTGTATTATTATTATTATTATTATTATTATTAG TGTTGTTATTATTATTTTCCATTATTATAGTGTGGTGTGTTAGAATATCC AATCCACTACTATAACATATGCTCAATTGTTTATCACCTAGTGATAGAAG TAGCCAATACTAACCCTACCACTACACTTGGATAATACCCAATAAACTAA CACTTAGTCAAACACATACGATGCATACAACACATACAACACATACAACA CATACAACACATACAGGTATCCAAGTCATCTATGAAGTCATCCAGTTCCA GGTCAAGTAAGTCAGGCAAGTCAGGCAAGTCAGGCAAGTCAAGCAAGACA ACGGACAATTCACACAAGGTAGACAACAATGGACATGGATCAATGGGAGG AAGTGGAGCTATTGAAGGACATGGACATGATGTAGGTACTTTCAAGTCAT CTCCCTCTCATGGCAGGGATGGCAAGAGTAGTCATGGCAGGGGCAGCAGG GAAGGGAGTAGTAGTACCTCTAAGAGTCGCAGCAAGAGTCACAGCAAGAG TCACAGCAAGAGCCATGCTAACAAGGACCAGTCCAAGGAACAATTCAAGG GAGAAGACAGTGATGCAAGAGACAGGCAAGCATTTCGGTGTCGAGTAACA ATATGTATACCATTATAATAAAAATATGTATACCATTATAATAAAAATAT GTATACCATTATAATAACAATATGTATACCATTATAATAACAATATTCAT ACCATTATAATAACAAAATGTATACCATTATAATAACAATATGTATACCA TTAAAAATATGTATACCATTATAATAACAATATGTATACCATTATAATAA CAATATTCATAGTATTATCGTGTTATGGCAGTTTCATGTCAAGCTCTTGT TGGTGATGAGTTATGCCAAGATTGATATTAGCAGTAACAATAATAATTAA AATACTATTAACAATAATAATAGTTAATATAGTAATGATACTTCCTATTG ATTTGGACATGTAGGGTTAGCCCAGCTGTGGTGGTGAGATGCCCCATTAA CTCTTGTTAATGGTATGGTACAGTTTCTATTAGCAAAAAAATTCCACCTC CCATAATCTTAGTTGCAGTTCTTCCTCCTAATGCTGTGGTTCTTTTTCAA GTATCACTCATACCAACTTTAGGGTTAGGGTACTGCCAACTTTACTCCTA ATTCCTCTTGCATTGTTTTATGTGTATCTCTTGTCTTTGCGCTTCTAGGG TTAGGGTTAGTTTCTTCTTTTTTCTCATGGTTGTTTTGTTTCACTGTGTG TGCAAATATGTTCTATGTTCTATGTAGCTTGCTCATTTCTGCTTGATAAC AGTAAAAATCGTTCAATAAAAATGGATAATAATAAAAAAACTATTTTCAC TACGTGTCTTGACCTTTAGACCTTTAGACCTTTAGACCTTTGAGCATGTG TTTCTTTGTTTTTTTGTGTCCTTGATATTGATGGTGTATGTATGCATTGC AATTTCATTGTTCTTACTGGTTGTATGCAGGGGTACTGCAGGAGGCGTTA CTGACGGTGAACGGAATGACAAAGGAGAAGGTCATGATCCACACCAATCC CAACAATCAAAGAGCAGGGCAGGGGGAAGGGACAGTGACTCTTCAAAGGG TTCCAAGAGCTCCAAGGGGAAACACAAGGACAAGGAGAAGGACAAGAAGG AGAAGGACAAGACCAAACGGAGTAGAAAGGAACACAAAGATGACAAACAT AAAGATGCAGAAAAGAACAAAAGCAGAGACAGAGACAGAGACAGAGACAA CAGCAGGGATGCAGACAGAGACAGAGATAAGAGCAGAGACAGAGACAACA GCAGGGATGCAGACAGAGACAGAGATAAGAGCAGAGACAACAGCAGGGAT AGGGATAGGGATAGGGTGAGGGATAGAGACAGGGCAGGTGAAAAGGATAA AGAACATGACTATGACAGGGGCAGGGGCAGGGGCTATGACTTTGACAGGG AGCATGGAAGAGAGAGGGACTATGAGAGAGGAAGGCATTGGGGAAGAGAT GACAACAGGGATGACAGGAGGGATCGTAGGGACTCGAGGGATAGGGACTT GAGGGATAGGGACTCGAGGGATATGGAGGCGGCCAGAGAGAGAGGCTGGA GCAAGAAAAGTACTGGGGGGGACGGAAGGGGAAGTAGGAGTTCGATACCT TGGGATGGATCTCCTGTTGGATTCTATGGTCCAGGCACCTGGCAAGCATC CTCAAGGTGATGTATCGATTGGTGCATTGTTTGTACCTTGATAGGATGGG GGGCATTTTGAAGTATTATCATCATTATTATTATTATTATTATTATTATT GTTATTATTATCATTGTTATTATTTCTAGGTTTAGTATTATTGGTAGTGG TGATGTAGTAAGGGTTCGTATTGTTGATCTATTAGTACAATTTATTTGCT GTAATACTTTTTTATTGATTTCAAGCATAATTTTGATTAGAGTTAGGGCT AGGATCACATACTAGTTCGACTATTTGAAGAGTATGTACCAACCCTAACC TCATGATATTTTTACTGACCCTAACCCTAGGAGGTGAATTTTTATTTTTT TTGTATCCAGTGTTGTGCACTGACACCATTTTTATTTTTTCTGTATGACT GACTATCGTTAAAATGCTCTGTATGAATTACTCATAACAGGTGTGTAACA CTGCATCATTTTTTAGGGTTAGGGTTAGTACATTACTAACAAAAAAAAGA ATGTGTCAATCGATAGGTGTAAATAGATGCCGATAAATTTACAGTGGTAC ATCAGAGATGTATTAACATTGCTTAGAGCTTCTTGTGCTTTACTTAATTT AGTTTAATTCATTCAACCCACTCATCAACAACAACAGACCTGCCTTAGTG AATTTAGTTTAATTCAATCAATCTACTTATCACCAAAGAATAATAAAATT TGTTTTACAACTCTTCTGTACGGTTTTCCCATCCCTAACCCTAACCCTAA CCCCTTTTTTATTTTCTTGATTGTGAAGACGAGATGATAATGTAGACTAC ATTCCTTTCACTACTTTCAGTAGTAACGCATGCGGTATTTTCGTTTAGTT TATACATTTATACATACTCCACATATAACAAGAATAATAGTTGTAATAAT AATAATAATAATATAAATCATAGTAATAGTAATAGTAATAATAATAATAA TAATACACTACATTTTACTCAGTAATGTTTTACTTATACCTGCTGCTGTA ACCGCCACCCTGTCAAACCCAAACCTTAACCTTAACCTTCACCTTAACCC AAACCTTAACCTTAACCTTAACCTTAACCTTAACCTTGACCCATTTTTAT TTTTTGTACCACTTGTGATTAGTCTGTAATTTTATGTCTTTCTGTTACTA CTAATAGTACAGTAATATCCCCAAGTTTGTATTTTTATTTATTATATATG TCTGTGCATTCTATTCACATCATTTTTTATTTGTACCTGCTGCTGCATCC TTCACCCTGCCAAACCCAACCTTAACCCTAACCCATTTTTGTATAAGTAG TCATCATTGTCCCTTGCATTTCTCTTACCCTTCCTATTACTCGTCATGAA CTCTAACCCTAACCCTAACCTTAAAACCTTAAAATTATTATAATAATTAT AATAATTATCGTTATTATGGATCAATAATCTCACCTTCAAATTTCTTTTC TATTATCACTATTACTAGTACATCATTAACCCTAACCTTACAGCACAATG GGGACAGTGTTTTATTAATTTAGAGGAGTCAATAACTGACAATAACTGAT AATGACTGACAATAACTGACAATAACTGATAATAACTGACAATAACTGAC AATGACTGACAATAACTGACAATAACTGACAATGACTGACAATAACTGAT AATGATAATGATAATGACTGACAATAATGATAATAACTGACAATAATGAC AATAATGACAATAATAACTGATAATAATGACAATAATGACAATAACCACG GACAAATGACCATTGAACACAACTCAGTACTAGGCTATGTTGTGTATATA TTCAATCAGTTTTCAGTCAGTCATCAGCCATCAATCAGTCATCAATCAGT CATCAATCAGTCATCAATCAGTCACCAATCAATCATCAATCAATCCTGCT TGTACTCGTGTCATAACTGTCTATACTAGCACAAACACTAAAATATATAT AATAATTATTAATAGTAATATTAGTATATATTACTACATATTACTAGCAC TAAAATATATATAATAATTATTTATAGTAGTATTAGTATTACTAACCCTA ACCCTAATCAATAAACCAACTGTAGGAGCTAAATCCTAACCTTAACCCTA ACCCTAAGAGTGGCAGTCACTCACTTATCCATGTAGAAGTTAAATATTAC TCCCTTTTAACTGTTGCATTGCAGCATTAGCCCTAACCCTAAGACATACC CTAACCCTAAGACATACCCTAACCCTTATAGTATAGTATAGTATTAGTTC ACCATTGTCAACCCTCTGATCTCACAGCATTAGGTTTATCCCACAAATAC ACCTTTATGACCCTTGAAGGGATAAAGCAAGGGTTAGTGCTGAGAGAGCA CCAAGAAAGGGAAGCCGTGATCGTGATAGAGGTGATAGAGGTGATAAGGG AGCAAGAGACAACAAACTCAACAAGGACAAGGACAAGGAGAAGGACAGTG AAGATAACCCTAACCCTGGCCCCACGGTAGGAGGAAATGGATCCGGTACA CTGGCTGGATCTGCTGTGCCTCAAGGGCTTTCACCCACCAAACCAATAGG ACTGAATCGAACAAGGTATGTATAACTTCACCTCTTCACCTCTTCACCTG TAGAATTGAGTACATGTAGAATTGAGTACATGTAGAATTGAGTACATGTT ACATGTAGAATTGAGTACGCCCCAAAGCACAGTATACACCATGCTCATGT TCCTAACCCTAACCTTGATAGTAATGGTAGTGATAGTAATACTAAGAACA ATTGTACAGGGATTGCAGCAAACTAACCACTGGTATGGCTATGAATGAAA TTTCACCCTTCCTGTGGTGTGAATTAGGGGGGATGATGGGGGGGGGATCC GAGGCCGAAGTAGGGGCGGGCCTGGGAGGGGGGGGATGGATGGCATG
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Coding sequence (CDS) from alignment at C-tenellus_contig1009:14..7210-

>mRNA_C-tenellus_contig1009.1.1 ID=mRNA_C-tenellus_contig1009.1.1|Name=mRNA_C-tenellus_contig1009.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1752bp|location=Sequence derived from alignment at C-tenellus_contig1009:14..7210- (Choristocarpus tenellus KU2346)
ATGTCACGTGGGGACAGGGAGGAGAGTGGAACGGAAGATCAGCATAGTCG
GGAAGCGGAGAAGGGTCGGAAACGGGATCGTAGTAAAGTGCGAAGCAAGA
GCACAGAGAGAGATAGAGAACGGAGCAGAGGTAAGGTTCGCGAAAAGGGA
AGAGCAAGATCTGGTGATCGTGGAAGTGACGGGAGCGACGACAAATCCAG
GGATCCTGAAAGACAGAGTACTTCACAACGAGGGAGTGAAAGGAAGAATG
GAACGAAGGACTCCAATGAGAACAGCAACAGCCTTGAGCTGGAGACCAAC
TCTGGGGAGGGCAGGGTGCATGGGACATCAGTAAAGTCAGGAAGTGCCAA
GGTATCCAAGTCATCTATGAAGTCATCCAGTTCCAGGTCAAGTAAGTCAG
GCAAGTCAGGCAAGTCAGGCAAGTCAAGCAAGACAACGGACAATTCACAC
AAGGTAGACAACAATGGACATGGATCAATGGGAGGAAGTGGAGCTATTGA
AGGACATGGACATGATGTAGGTACTTTCAAGTCATCTCCCTCTCATGGCA
GGGATGGCAAGAGTAGTCATGGCAGGGGCAGCAGGGAAGGGAGTAGTAGT
ACCTCTAAGAGTCGCAGCAAGAGTCACAGCAAGAGTCACAGCAAGAGCCA
TGCTAACAAGGACCAGTCCAAGGAACAATTCAAGGGAGAAGACAGTGATG
CAAGAGACAGGGGTACTGCAGGAGGCGTTACTGACGGTGAACGGAATGAC
AAAGGAGAAGGTCATGATCCACACCAATCCCAACAATCAAAGAGCAGGGC
AGGGGGAAGGGACAGTGACTCTTCAAAGGGTTCCAAGAGCTCCAAGGGGA
AACACAAGGACAAGGAGAAGGACAAGAAGGAGAAGGACAAGACCAAACGG
AGTAGAAAGGAACACAAAGATGACAAACATAAAGATGCAGAAAAGAACAA
AAGCAGAGACAGAGACAGAGACAGAGACAACAGCAGGGATGCAGACAGAG
ACAGAGATAAGAGCAGAGACAGAGACAACAGCAGGGATGCAGACAGAGAC
AGAGATAAGAGCAGAGACAACAGCAGGGATAGGGATAGGGATAGGGTGAG
GGATAGAGACAGGGCAGGTGAAAAGGATAAAGAACATGACTATGACAGGG
GCAGGGGCAGGGGCTATGACTTTGACAGGGAGCATGGAAGAGAGAGGGAC
TATGAGAGAGGAAGGCATTGGGGAAGAGATGACAACAGGGATGACAGGAG
GGATCGTAGGGACTCGAGGGATAGGGACTTGAGGGATAGGGACTCGAGGG
ATATGGAGGCGGCCAGAGAGAGAGGCTGGAGCAAGAAAAGTACTGGGGGG
GACGGAAGGGGAAGTAGGAGTTCGATACCTTGGGATGGATCTCCTGTTGG
ATTCTATGGTCCAGGCACCTGGCAAGCATCCTCAAGGGATAAAGCAAGGG
TTAGTGCTGAGAGAGCACCAAGAAAGGGAAGCCGTGATCGTGATAGAGGT
GATAGAGGTGATAAGGGAGCAAGAGACAACAAACTCAACAAGGACAAGGA
CAAGGAGAAGGACAGTGAAGATAACCCTAACCCTGGCCCCACGGTAGGAG
GAAATGGATCCGGTACACTGGCTGGATCTGCTGTGCCTCAAGGGCTTTCA
CCCACCAAACCAATAGGACTGAATCGAACAAGGGGGGATGATGGGGGGGG
GATCCGAGGCCGAAGTAGGGGCGGGCCTGGGAGGGGGGGGATGGATGGCA
TG
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