mRNA_C-tenellus_contig10076.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10076.2.1
Unique NamemRNA_C-tenellus_contig10076.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10076.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10076contigC-tenellus_contig10076:1185..2144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size382
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_002820.1
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789113.9603903-CDS-C-tenellus_contig10076:1186..14831680789113.9603903-CDS-C-tenellus_contig10076:1186..1483Choristocarpus tenellus KU2346CDSC-tenellus_contig10076 1187..1483 -
1680789113.9708538-CDS-C-tenellus_contig10076:2063..21441680789113.9708538-CDS-C-tenellus_contig10076:2063..2144Choristocarpus tenellus KU2346CDSC-tenellus_contig10076 2064..2144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10076.2.1prot_C-tenellus_contig10076.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10076 1187..2144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10076.2.1

>prot_C-tenellus_contig10076.2.1 ID=prot_C-tenellus_contig10076.2.1|Name=mRNA_C-tenellus_contig10076.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=126bp
RNENRIHVEKKIKDFKGKEWTVDCSGEIIVVEPLPPESMPHLQEPQVEVR
DVQHPADIKERSQQRPSQRGRQRGKKGGAKRSVERARRKTLSGQGQWTGG
KMVGQGVQSRPSSGFFEIASTLQVHG
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mRNA from alignment at C-tenellus_contig10076:1185..2144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10076.2.1 ID=mRNA_C-tenellus_contig10076.2.1|Name=mRNA_C-tenellus_contig10076.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=960bp|location=Sequence derived from alignment at C-tenellus_contig10076:1185..2144- (Choristocarpus tenellus KU2346)
AGGAATGAGAACCGCATTCATGTGGAGAAGAAAATCAAGGACTTCAAGGG
GAAAGAATGGACCGTGGATTGCAGTGGAGAGGTAGGCGACCTCTTGTTGT
GCTGGTTGGGGGTTATTATCTTGTGAATCTCACCAGAGATATTGGATGAA
GATTAGAATAAATATTGCATTCTTGAACCTCCTTTCTTTCCCAGCAAACC
ACGATCTGAGAAGGGGAATACCAGTCCCCTACGCTGAACACCAATAGTGC
CACAAATCAAGTGATGTATGATTTTTCCACCACTTGGACATACCTTTTGT
TAAAATGTTACCAAGTGGTAGGGTGAGAAGTCCGCCACACGACCCTTACA
CTTTGATGTTTATTGATTCAGAGGGTATCAGAAGGATAACTCCGCATTAA
ATACATGTCGTTGATGGGATAAGACATTCCCTCCGCCCTCATCTGAGTAG
CATGCAGACCTACAAAGATTGCAGCTCTTACTCATGTGTTACTACACACC
ATCCTTGTCCTAACCTTTTATTTGTAAACACTCAGCAACTCTCCCTCTAT
GGGTTTTCGTGCAAGAACTACTCATTTCGATCGCCCTAGAAGAAGGAAAA
CTCACAAACACACACACAAAACCCTACCTTTGGCTCTACTCCTAACTTCA
ACCTGGAGAAGATAATTGTGGTTGAGCCACTCCCACCAGAGAGCATGCCC
CACCTGCAAGAGCCACAAGTAGAAGTCCGAGATGTACAACACCCAGCTGA
CATCAAGGAAAGGTCCCAGCAACGACCAAGCCAGAGGGGGCGGCAGAGGG
GTAAAAAAGGGGGAGCAAAGAGGAGTGTGGAACGGGCTAGAAGAAAAACC
TTGAGTGGTCAGGGCCAATGGACTGGCGGCAAAATGGTGGGGCAAGGTGT
CCAAAGCCGACCATCTTCCGGATTTTTTGAGATTGCATCAACACTTCAGG
TACATGGGGT
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Coding sequence (CDS) from alignment at C-tenellus_contig10076:1185..2144-

>mRNA_C-tenellus_contig10076.2.1 ID=mRNA_C-tenellus_contig10076.2.1|Name=mRNA_C-tenellus_contig10076.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=378bp|location=Sequence derived from alignment at C-tenellus_contig10076:1185..2144- (Choristocarpus tenellus KU2346)
AGGAATGAGAACCGCATTCATGTGGAGAAGAAAATCAAGGACTTCAAGGG
GAAAGAATGGACCGTGGATTGCAGTGGAGAGATAATTGTGGTTGAGCCAC
TCCCACCAGAGAGCATGCCCCACCTGCAAGAGCCACAAGTAGAAGTCCGA
GATGTACAACACCCAGCTGACATCAAGGAAAGGTCCCAGCAACGACCAAG
CCAGAGGGGGCGGCAGAGGGGTAAAAAAGGGGGAGCAAAGAGGAGTGTGG
AACGGGCTAGAAGAAAAACCTTGAGTGGTCAGGGCCAATGGACTGGCGGC
AAAATGGTGGGGCAAGGTGTCCAAAGCCGACCATCTTCCGGATTTTTTGA
GATTGCATCAACACTTCAGGTACATGGG
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