mRNA_C-tenellus_contig10075.2.5 (mRNA) Choristocarpus tenellus KU2346
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Overview
Homology
BLAST of mRNA_C-tenellus_contig10075.2.5 vs. uniprot
Match: D7FZD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD7_ECTSI) HSP 1 Score: 119 bits (299), Expect = 3.460e-26 Identity = 83/308 (26.95%), Postives = 143/308 (46.43%), Query Frame = 1
Query: 283 RTSLREQVEECVRDVIFPEVGCDLPEDVNVDSVLPV--SSNRRCRFEAEDLKSENMKKVASMFHFRFIGDSTTRRLADSFESLYTGIKPTHPKEEINIDHRVGALDAVFKWTPMCSDFPAKIAESTLALDNPA---HKVVVIVTQFGIHDITHALKTPEGSWQGRVQASDVHAKDNQERSKSAMGRCLNVTQRLIDFAQ-----QQSREGLR---PIVLLMQGNPFMAGDVRCGWMDELHVQRLKVLQNGQIHSHAGNSTAGGPYMLEDTAGIFDKLECKRINDSIHFWEPVKLTQAKMLWHIMTIIA 1167
R L + V +C + P C+ + D +P+ S + C FE L + + +AS + F+GDST+RRL +SF S+ TG + H + + V L F W P C + + DN A + +IVT FG+ D +H ++A+G C + + L+ AQ + E + P+V L+Q NPF+ G + ++ +LH + +++ +G+ + Y++ D IF++L C R+++SIHF +PVKL + KMLW ++ ++A
Sbjct: 62 RGGLHDLVRQCAERLDLPGYTCE-KNSSSADFRIPLMGSGDLPCGFETR-LPTSTFEDLASRYAIHFMGDSTSRRLVESFISIATGNRSAHVYYHESRNLTVDGLQVNFHWAPYCRQVKNESLHEIM--DNQALDGGRRAIIVTAFGVWDSSHG-----------------------GGDEAALGVCADAVRSLVQVAQPPPAGSTTAENIAASPPLVFLLQNNPFLPGSEQDLFLRDLHQIQREIVDSGEQEA---------VYLVHDRESIFNRLSCYRMSESIHFNDPVKLVEGKMLWDLIELVA 333
BLAST of mRNA_C-tenellus_contig10075.2.5 vs. uniprot
Match: A0A6H5L6U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U4_9PHAE) HSP 1 Score: 122 bits (306), Expect = 4.630e-26 Identity = 93/332 (28.01%), Postives = 144/332 (43.37%), Query Frame = 1
Query: 406 CRFEAEDLKSENMKKVASMFHFRFIGDSTTRRLADSFESLYTGIKPTHPKEEINIDHRVGALDAVFKWTPMCSDFPAKIAESTLALDNPAH----KVVVIVTQFGIHDITHALKTPEGSWQGRVQAS---DVHAKDNQERSKSAMGRCLNVTQRLI---------------------------------------DFAQQQS--------REG---------------------LRPIVLLMQGNPFMAGDVRCGWMDELH-VQRLKVLQNGQIHSHAGNSTAGGPYMLEDTAGIFDKLECKRINDSIHFWEPVKLTQAKMLWHIMTIIADG 1173
C FE E L E M+ +AS + F FIGDST+RRL +SF S++TG THP + +I+ G L F W P+CS + A T +D K VI+T FG+HD G Q++ D+ KD + A+G C + T +L+ + +Q+Q+ R G L+P++ LMQ N + G V + ++LH +QR V + G+ G ++++D+ G++ L C R + IHF EPVKL + KMLW ++ ++ +G
Sbjct: 111 CGFE-ERLGKEAMEDIASKYSFHFIGDSTSRRLGESFVSIFTGRGSTHPVVQRDINFSSGNLKVHFYWAPLCSGPESVGAMLTTVMDAVLAAKDGKRAVIITAFGVHDAFELQHAANGHGSPSYQSTLPQDIVEKDGMRAA--ALGACRDATTQLVRTAAATAVPGTAAPPVEEEQSPGDAQHQLPNVSTQVGRHETSQKQAAGIPPNNVRGGSVGAGKEDALDASAPPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHRIQRQAVGEWEASEGSKGDDGERGLFLVDDSVGLYGNLSCYRSANPIHFDEPVKLMEGKMLWDLLVLVDNG 439
BLAST of mRNA_C-tenellus_contig10075.2.5 vs. uniprot
Match: D7G0T6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T6_ECTSI) HSP 1 Score: 112 bits (279), Expect = 6.940e-23 Identity = 95/352 (26.99%), Postives = 143/352 (40.62%), Query Frame = 1
Query: 289 SLREQVEECVRDVIFPEVGCDLPED--VNVDSVLP--VSSNRRCRFEAEDLKSENMKKVASMFHFRFIGDSTTRRLADSFESLYTGIKPTHPKEEINIDHRVGALDAVFKWTPMCSDFPAKIAESTLALDNP-----AHKVVVIVTQFGIHDITHALKTPEGSWQ-GRVQASDVHAKDNQERSKSAMGRCLNVTQRLIDFAQQQ----------------------------------------------SREGLRPIVLLMQGNPFMAGDVRCGWMDELHVQRLKVLQNGQIH---SHAGNSTA-GGPYMLEDTAGIFDKLECKRINDSIHFWEPVKLTQAKMLWHIMTII 1164
+R V +C R + C E V D LP S C FE E +E ++ +AS F F FIGDST RRL +SF S++TG H ++D G L+ F W P C + A+ +D K VI+T FG+HD +GS + A DN + +G C T +L+ A + + + P+V LMQ N + +++E L+ +Q G++ + GN A GG Y+++D+ +F L C R + IHF EPVKL + KMLW ++ ++
Sbjct: 83 QVRTLVHDCARRLKVAGDLCGHSETPVVEDDYRLPHMESGVLPCGFE-ERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHDMVHSDLDFSTGNLETRFYWAPFCFGSESVGAKLATVMDGVKTAKRGDKRTVIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAWADPTAEKGQWSKAVHASPNTTTRSTTETNGVSFSFGAPGTTAATDPTPPLVFLMQNNRYPPNSPEDNYLEE-----LRRIQRGEVQEWEAGEGNEDAEGGIYLVDDSVSLFRNLSCYRERNPIHFHEPVKLVEGKMLWDLLALV 428
BLAST of mRNA_C-tenellus_contig10075.2.5 vs. uniprot
Match: D7G0V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V6_ECTSI) HSP 1 Score: 103 bits (257), Expect = 7.030e-20 Identity = 82/333 (24.62%), Postives = 137/333 (41.14%), Query Frame = 1
Query: 421 EDLKSENMKKVASMFHFRFIGDSTTRRLADSFESLYTGIKPTHPKEEINIDHRVGALDAVFKWTPMCSDFPAKIAESTLALDNPAH-----KVVVIVTQFGIHD---ITHALKTPEGSWQGRVQASDVHAKDNQERSKSAMGRCLNVTQRLIDFA---------------QQQSREG--------------------------------------------------------LRPIVLLMQGNPFMAGDVRCGWMDELHVQRLKVLQNGQIHSHAGNSTAGGP---YMLEDTAGIFDKLECKRINDSIHFWEPVKLTQAKMLWHIMTIIADG 1173
E L + M+ +AS + F IGDST+RRL +SF S++TG H + + D G L F W P+CS P + ++ + K VI+T +G+HD + HA DV KD + A+G C + T +L+ A +Q +G L+P++ LMQ N + G V + ++LH+ + +V+ G+ + G+ GG ++++++ G++ L C R + IHF EPVKL + KMLW ++ ++ +G
Sbjct: 82 ERLGKDAMEYIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHRIAQRDRDFSSGNLKVHFYWAPLCSG-PESVGAMLASVMDAVRAAKDGKRAVIITAYGVHDAFELHHAANGHGSPSYKSALPQDVVEKDGMRAA--ALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVSTKVEVGPHETSEKQAAGIPPHNVRGGSVGAGNEDTLLGASAPPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHIIQRQVV--GEWEASEGSKGDGGERGLFLVDNSVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLLVLVDNG 409
BLAST of mRNA_C-tenellus_contig10075.2.5 vs. uniprot
Match: A0A6H5JGU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU9_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 7.150e-17 Identity = 99/406 (24.38%), Postives = 142/406 (34.98%), Query Frame = 1
Query: 304 VEECVRDVIFPEVGCDLPEDVNVDSV-LPVSSNRRCRFEAEDLKSENMKKVASMFHFRFIGDSTTRRLADSFESLYTGIKPTHPKEEINIDHRVGALDAVFKWTPMCSDFPAKIAESTLAL---------------------DNPAHKVVVIVTQFGIHDITHALKT---PE-GSWQGRVQASDVHAKDNQERSKSAMGRCLNVTQRLIDFAQQQS----------------------------------------REGLRP------------------------------------------------IVLLMQGNPFMAGDVRCGWMDELHVQRLKVL------QNGQIHSHAGNSTAGGPYMLEDTAGIFDKLECKRINDSIHFWEPVKLTQAKMLWHIMTI 1161
V +C R ++ P CD P + V L S N C FE + E + +A + F FIGDSTTRRLA+SF S+ +G THP ID G L F W P CS A AL +N + + VI T FG+HD T K PE W + A Q + +A+ C + T+ L++ A R+G+ +V L+Q NPF ++ +LH + +V+ Q + ++L D ++ + C RI+ SIHF EPVKL + KMLWH++ I
Sbjct: 233 VSDCARQLMLPGFSCDEPVLQDQYRVPLMESGNASCGFETL-MPDEKLLDLALKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDGGISAAVRDALGFRSSTYGSGNNNDGXXXXXXENGSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVAA--QGPTAAALETCRDATRELVEVAAAXXXXXXXXXXXDGGGDVGNNPSLSEATGEGGEGQVVVNADGRRDGIADKKLRGGGGVSSEVAVHESDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXLVFLLQNNPFNPRSELDYFLQQLHRIQEQVIDEAAAKQGCEXXXXXXXXXXXRVFLLRDRDSLYSSMSCYRIDGSIHFHEPVKLVEGKMLWHLVEI 635
BLAST of mRNA_C-tenellus_contig10075.2.5 vs. uniprot
Match: D7FUL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL3_ECTSI) HSP 1 Score: 87.0 bits (214), Expect = 2.680e-14 Identity = 69/213 (32.39%), Postives = 93/213 (43.66%), Query Frame = 1
Query: 304 VEECVRDVIFPEVGCDLPEDVNVDSV-LPVSSNRRCRFEAEDLKSENMKKVASMFHFRFIGDSTTRRLADSFESLYTGIKPTHPKEEINIDHRVGALDAVFKWTPMCS---DFPAKIAE------STLALDN-------------PAHKVVVIVTQFGIHDITHALKT---PE-GSWQGRVQASDVHAKDNQERSKSAMGRCLNVTQRLIDFA 861
V +C R ++ P GCD P + V L S + C FE + E + +AS + F FIGDSTTRRLA+SF S+ +G THP ID G L F W P CS A + + ST DN + + VI T FG+HD T K PE W A D + +A+ C + T+ L++ A
Sbjct: 205 VSDCARQLVLPGFGCDEPVLADQYRVPLMESGDASCGFETR-MPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVGGGVSAAVRDALGFRSSTYGSDNNYDGDDXXXXXXXXSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQAAVATDGP--TAAALQTCRDATRELVEVA 414
BLAST of mRNA_C-tenellus_contig10075.2.5 vs. uniprot
Match: A0A6H5JFC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC3_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 1.820e-13 Identity = 68/257 (26.46%), Postives = 106/257 (41.25%), Query Frame = 1
Query: 442 MKKVASMFHFRFIGDSTTRRLADSFESLYTGIKPTHPKEEINIDHRVGALDAVFKWTPMCSDFPAKIAES----TLALDNPAHKVVVIVTQFGIHDITHALKTPEGSWQGRVQASDVHAKDNQERSKSA-MGRCLNVTQRLI-----------------------------------------------DFAQQQSREGLRPIVLLMQGNPFMAGDVRCGWMDELHVQRLKVLQNG--QIHSHAGNSTAGGPYMLED 1050
++ ++S + F F+GDSTTRRLA+SF S+ TG H ID G+L +F W PMC D +KI S A +I+T FG+H+ H L + R A H +E +++A + C VT +L+ D + EGL P+V L+Q N + G +++ LH + +V++ G I H N+ G ++L+D
Sbjct: 79 LEDLSSRYVFHFVGDSTTRRLAESFVSILTGQASPHFVVHERIDMSSGSLKVIFHWAPMCIDARSKIQASIDEIVAAQLRNGDARAIIITAFGVHN-AHRLYGDQAGTLPRYTAPSSHDTFREEDAEAAALNVCEEVTSQLVHVANLTAGRSASANQEKLYSPGHRGLDVADEGDPKFGRPRGTWTGGGDVSLSIDDEGLPPLVFLLQNNHYFPGSEEDRFLEHLHDVQDRVVRQGAKDIARHGENA---GVFVLDD 331 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10075.2.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10075.2.5 >prot_C-tenellus_contig10075.2.5 ID=prot_C-tenellus_contig10075.2.5|Name=mRNA_C-tenellus_contig10075.2.5|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=336bp MHSVMSLKILAGVVILLPLALFEPMTDALHVRTSLREQVEECVRDVIFPEback to top mRNA from alignment at C-tenellus_contig10075:435..5423+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10075.2.5 ID=mRNA_C-tenellus_contig10075.2.5|Name=mRNA_C-tenellus_contig10075.2.5|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4989bp|location=Sequence derived from alignment at C-tenellus_contig10075:435..5423+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10075:435..5423+ >mRNA_C-tenellus_contig10075.2.5 ID=mRNA_C-tenellus_contig10075.2.5|Name=mRNA_C-tenellus_contig10075.2.5|organism=Choristocarpus tenellus KU2346|type=CDS|length=1008bp|location=Sequence derived from alignment at C-tenellus_contig10075:435..5423+ (Choristocarpus tenellus KU2346)back to top |