mRNA_C-tenellus_contig10075.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10075.1.1
Unique NamemRNA_C-tenellus_contig10075.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig10075.1.1 vs. uniprot
Match: A0A7V9T443_9RICK (Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Rickettsiaceae bacterium TaxID=2023360 RepID=A0A7V9T443_9RICK)

HSP 1 Score: 159 bits (402), Expect = 4.090e-48
Identity = 68/84 (80.95%), Postives = 78/84 (92.86%), Query Frame = 1 
Query:    1 GKPVFITHRTDEKIKEAVDTPLKDLIDPEEDSARVKPGHSKWLVTIGICTHLGCVPLSNKGYYDGWFCPCHGSHYDTSGRIRKG 252
            GKPVFIT+RTD +I+E V+TPLKDL+DP+ DSARVK GH+KWLVTIGICTHLGCVPL+NKG Y+GWFCPCHGSHYD SGR+RKG
Sbjct:   73 GKPVFITNRTDAEIQEVVNTPLKDLVDPQLDSARVKEGHTKWLVTIGICTHLGCVPLANKGDYEGWFCPCHGSHYDKSGRVRKG 156
[Close]
BLAST of mRNA_C-tenellus_contig10075.1.1 vs. uniprot
Match: A0A2A5AXE5_9RICK (Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2A5AXE5_9RICK)

HSP 1 Score: 158 bits (399), Expect = 1.170e-47
Identity = 68/84 (80.95%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:    1 GKPVFITHRTDEKIKEAVDTPLKDLIDPEEDSARVKPGHSKWLVTIGICTHLGCVPLSNKGYYDGWFCPCHGSHYDTSGRIRKG 252
            GKP+FI HRT+ +I+EA  TP+K+LIDPE DS RVKPG SKWLVTIGICTHLGCVP++NKG YDGWFCPCHGSHYDTSGRIRKG
Sbjct:   73 GKPIFIKHRTEAEIEEAEMTPMKELIDPEADSDRVKPGQSKWLVTIGICTHLGCVPIANKGEYDGWFCPCHGSHYDTSGRIRKG 156
[Close]
BLAST of mRNA_C-tenellus_contig10075.1.1 vs. uniprot
Match: A0A8K1N078_9RICK (Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Candidatus Megaira endosymbiont of Mesostigma viride TaxID=2866314 RepID=A0A8K1N078_9RICK)

HSP 1 Score: 155 bits (392), Expect = 1.350e-46
Identity = 67/84 (79.76%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:    1 GKPVFITHRTDEKIKEAVDTPLKDLIDPEEDSARVKPGHSKWLVTIGICTHLGCVPLSNKGYYDGWFCPCHGSHYDTSGRIRKG 252
            GKPVFI +RT+E+IKEA +TP+  L+DP+EDSARVK GH KWL+TIGICTHLGCVPL+NKG Y GWFCPCHGSHYDTSGRIRKG
Sbjct:   73 GKPVFIRNRTEEEIKEARETPMSALVDPQEDSARVKAGHDKWLITIGICTHLGCVPLANKGDYLGWFCPCHGSHYDTSGRIRKG 156
[Close]
BLAST of mRNA_C-tenellus_contig10075.1.1 vs. uniprot
Match: A0A431HEI4_9RICK (Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A431HEI4_9RICK)

HSP 1 Score: 153 bits (387), Expect = 7.790e-46
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    1 GKPVFITHRTDEKIKEAVDTPLKDLIDPEEDSARVKPGHSKWLVTIGICTHLGCVPLSNKGYYDGWFCPCHGSHYDTSGRIRKG 252
            GKPVFIT+RTDE+IKE   T +KDLIDP+ DS RVK GH KWL+TIGICTHLGCVP+SNKG ++GWFCPCHGSHYD SGR+RKG
Sbjct:   73 GKPVFITNRTDEEIKEVAATQMKDLIDPQPDSDRVKKGHEKWLITIGICTHLGCVPISNKGDFEGWFCPCHGSHYDKSGRVRKG 156
[Close]
BLAST of mRNA_C-tenellus_contig10075.1.1 vs. uniprot
Match: A0A4Q3DJ42_9RICK (Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Rickettsiaceae bacterium TaxID=2023360 RepID=A0A4Q3DJ42_9RICK)

HSP 1 Score: 149 bits (377), Expect = 2.500e-44
Identity = 63/84 (75.00%), Postives = 73/84 (86.90%), Query Frame = 1 
Query:    1 GKPVFITHRTDEKIKEAVDTPLKDLIDPEEDSARVKPGHSKWLVTIGICTHLGCVPLSNKGYYDGWFCPCHGSHYDTSGRIRKG 252
            GKP+FIT+RT EKI+EA    L +L DP+ED ARVKPGH  WLVTIGICTHLGCVP++N+G YDGWFCPCHGSHYD+SGR+RKG
Sbjct:   72 GKPIFITNRTQEKIQEAQGVNLHELRDPQEDKARVKPGHENWLVTIGICTHLGCVPIANQGDYDGWFCPCHGSHYDSSGRVRKG 155
[Close]
BLAST of mRNA_C-tenellus_contig10075.1.1 vs. uniprot
Match: A0A0F3MIL9_9RICK (Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Orientia chuto str. Dubai TaxID=1359168 RepID=A0A0F3MIL9_9RICK)

HSP 1 Score: 145 bits (366), Expect = 2.980e-42
Identity = 61/84 (72.62%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:    1 GKPVFITHRTDEKIKEAVDTPLKDLIDPEEDSARVKPGHSKWLVTIGICTHLGCVPLSNKGYYDGWFCPCHGSHYDTSGRIRKG 252
            GKPVFI HRT+++IKEA    L +LIDPEED ARVKPG+ +WLV +GICTHLGC+P    G Y+GWFCPCHGSHYDTSGRIRKG
Sbjct:  104 GKPVFIKHRTNDEIKEAQQVNLSELIDPEEDKARVKPGYDQWLVVVGICTHLGCIPTDRSGDYNGWFCPCHGSHYDTSGRIRKG 187
[Close]
BLAST of mRNA_C-tenellus_contig10075.1.1 vs. uniprot
Match: A0A261DBA5_9RICK (Ubiquinol-cytochrome c reductase iron-sulfur subunit n=3 Tax=unclassified Rickettsia TaxID=114295 RepID=A0A261DBA5_9RICK)

HSP 1 Score: 143 bits (360), Expect = 9.000e-42
Identity = 63/84 (75.00%), Postives = 71/84 (84.52%), Query Frame = 1 
Query:    1 GKPVFITHRTDEKIKEAVDTPLKDLIDPEEDSARVKPGHSKWLVTIGICTHLGCVPLSNKGYYDGWFCPCHGSHYDTSGRIRKG 252
            GKPVFIT+RT EKI EA +  L +L+DPE D  RVK GH KWLVTIGICTHLGCVPL+N+G YDGWFCPCHGS YD+SGR+RKG
Sbjct:   70 GKPVFITNRTPEKIAEARNVNLAELMDPELDQDRVKSGHDKWLVTIGICTHLGCVPLANQGDYDGWFCPCHGSQYDSSGRVRKG 153
[Close]
BLAST of mRNA_C-tenellus_contig10075.1.1 vs. uniprot
Match: A5CED6_ORITB (Ubiquinol-cytochrome c reductase iron-sulfur subunit n=12 Tax=Orientia tsutsugamushi TaxID=784 RepID=A5CED6_ORITB)

HSP 1 Score: 144 bits (364), Expect = 1.080e-41
Identity = 62/84 (73.81%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:    1 GKPVFITHRTDEKIKEAVDTPLKDLIDPEEDSARVKPGHSKWLVTIGICTHLGCVPLSNKGYYDGWFCPCHGSHYDTSGRIRKG 252
            GKPVFI HRTDE+IKEA    L +LIDPEED+ RVK G+ +WLV IGICTHLGC+P+   G Y+GWFCPCHGSHYDTSGRIRKG
Sbjct:  125 GKPVFIKHRTDEEIKEARAVNLSELIDPEEDNTRVKSGYDQWLVIIGICTHLGCIPIDRSGEYNGWFCPCHGSHYDTSGRIRKG 208
[Close]
BLAST of mRNA_C-tenellus_contig10075.1.1 vs. uniprot
Match: A0A429XSD0_9RICK (Ubiquinol-cytochrome c reductase iron-sulfur subunit n=3 Tax=cellular organisms TaxID=131567 RepID=A0A429XSD0_9RICK)

HSP 1 Score: 143 bits (360), Expect = 1.240e-41
Identity = 61/84 (72.62%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:    1 GKPVFITHRTDEKIKEAVDTPLKDLIDPEEDSARVKPGHSKWLVTIGICTHLGCVPLSNKGYYDGWFCPCHGSHYDTSGRIRKG 252
            GK +FITHRT+E+IKEA D  L DL DPE D  RVK G S+WL+T+GICTHLGCVP+ NKG + GWFCPCHGSHYD+SGRIRKG
Sbjct:   81 GKTIFITHRTEEEIKEAEDVNLADLRDPEPDKDRVKAGKSQWLITVGICTHLGCVPIGNKGEFGGWFCPCHGSHYDSSGRIRKG 164
[Close]
BLAST of mRNA_C-tenellus_contig10075.1.1 vs. uniprot
Match: A0A3L7A9H0_9HYPH (Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Xanthobacter tagetidis TaxID=60216 RepID=A0A3L7A9H0_9HYPH)

HSP 1 Score: 142 bits (358), Expect = 1.810e-41
Identity = 62/84 (73.81%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:    1 GKPVFITHRTDEKIKEAVDTPLKDLIDPEEDSARVKPGHSKWLVTIGICTHLGCVPLSNKGYYDGWFCPCHGSHYDTSGRIRKG 252
            GKP+FI+HRT  +IK A DTPL DL DP+ DSARVKPG  +WLV IGICTHLGCVPL ++G Y+GWFCPCHGS YDTSGRIR G
Sbjct:   70 GKPIFISHRTPAEIKAAQDTPLSDLKDPQPDSARVKPGKDQWLVVIGICTHLGCVPLGHQGAYNGWFCPCHGSAYDTSGRIRVG 153
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10075.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V9T443_9RICK4.090e-4880.95Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
A0A2A5AXE5_9RICK1.170e-4780.95Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
A0A8K1N078_9RICK1.350e-4679.76Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
A0A431HEI4_9RICK7.790e-4677.38Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
A0A4Q3DJ42_9RICK2.500e-4475.00Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
A0A0F3MIL9_9RICK2.980e-4272.62Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
A0A261DBA5_9RICK9.000e-4275.00Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
A5CED6_ORITB1.080e-4173.81Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
A0A429XSD0_9RICK1.240e-4172.62Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
A0A3L7A9H0_9HYPH1.810e-4173.81Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10075contigC-tenellus_contig10075:60..311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog10228.TriadP34599
PFAMsRieske,UCR_Fe-S_N,UCR_TM
Model size252
Max annot lvl2759|Eukaryota
KEGG koko:K00411
KEGG Pathwayko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
Exons1
Evalue1.89e-44
EggNOG OGsCOG0723@1|root,KOG1671@2759|Eukaryota
EC1.10.2.2
Descriptionoxidoreductase activity, acting on diphenols and related substances as donors
Cds size252
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789113.8542008-CDS-C-tenellus_contig10075:59..3111680789113.8542008-CDS-C-tenellus_contig10075:59..311Choristocarpus tenellus KU2346CDSC-tenellus_contig10075 60..311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10075.1.1prot_C-tenellus_contig10075.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10075 60..311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10075.1.1

>prot_C-tenellus_contig10075.1.1 ID=prot_C-tenellus_contig10075.1.1|Name=mRNA_C-tenellus_contig10075.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=84bp
GKPVFITHRTDEKIKEAVDTPLKDLIDPEEDSARVKPGHSKWLVTIGICT
HLGCVPLSNKGYYDGWFCPCHGSHYDTSGRIRKG
back to top

mRNA from alignment at C-tenellus_contig10075:60..311-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10075.1.1 ID=mRNA_C-tenellus_contig10075.1.1|Name=mRNA_C-tenellus_contig10075.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=252bp|location=Sequence derived from alignment at C-tenellus_contig10075:60..311- (Choristocarpus tenellus KU2346)
GGGAAACCAGTGTTTATAACTCATAGAACTGATGAGAAAATAAAAGAAGC
TGTTGACACTCCACTGAAAGATTTAATTGACCCAGAAGAAGATTCTGCAA
GAGTTAAGCCTGGACATTCTAAATGGTTAGTAACAATCGGAATATGCACA
CATCTTGGCTGCGTTCCACTATCTAATAAAGGTTACTATGATGGCTGGTT
TTGTCCTTGTCATGGTTCTCATTATGATACATCGGGAAGAATTAGAAAAG
GT
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10075:60..311-

>mRNA_C-tenellus_contig10075.1.1 ID=mRNA_C-tenellus_contig10075.1.1|Name=mRNA_C-tenellus_contig10075.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=252bp|location=Sequence derived from alignment at C-tenellus_contig10075:60..311- (Choristocarpus tenellus KU2346)
GGGAAACCAGTGTTTATAACTCATAGAACTGATGAGAAAATAAAAGAAGC
TGTTGACACTCCACTGAAAGATTTAATTGACCCAGAAGAAGATTCTGCAA
GAGTTAAGCCTGGACATTCTAAATGGTTAGTAACAATCGGAATATGCACA
CATCTTGGCTGCGTTCCACTATCTAATAAAGGTTACTATGATGGCTGGTT
TTGTCCTTGTCATGGTTCTCATTATGATACATCGGGAAGAATTAGAAAAG
GT
back to top