mRNA_C-tenellus_contig10071.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10071.1.1
Unique NamemRNA_C-tenellus_contig10071.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10071.1.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 5.770e-15
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:   19 RLLFYADKELNVTTEIKPTFQYMQNRGEFEMSDILAV--------CRVMVDWLGLSEDERTLEPLSSILEDVPVFLCKQLKKLK 246
            RL FYAD ELNVT+++K  FQ+   +GE EM  IL +          V V W G  EDE T +PLS I +D P FL ++L+K+K
Sbjct:   71 RLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMK 154
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BLAST of mRNA_C-tenellus_contig10071.1.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 7.280e-14
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:   19 RLLFYADKELNVTTEIKPTFQYMQNRGEFEMSDILAV--------CRVMVDWLGLSEDERTLEPLSSILEDVPVFLCKQLKKLK 246
            RL FYAD ELNVT+++K  FQ+   +GE EM  IL +          V V W G  EDE T +PLS I +D P FL ++L+K+K
Sbjct:  326 RLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMK 409
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BLAST of mRNA_C-tenellus_contig10071.1.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 8.190e-14
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:   19 RLLFYADKELNVTTEIKPTFQYMQNRGEFEMSDILAV--------CRVMVDWLGLSEDERTLEPLSSILEDVPVFLCKQLKKLK 246
            RL FYAD ELNVT+++K  FQ+   +GE EM  IL +          V V W G  EDE T +PLS I +D P FL ++L+K+K
Sbjct: 1549 RLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMK 1632
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BLAST of mRNA_C-tenellus_contig10071.1.1 vs. uniprot
Match: A0A3R6WKY8_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WKY8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 5.370e-8
Identity = 34/72 (47.22%), Postives = 42/72 (58.33%), Query Frame = 1 
Query:   19 RLLFYADKELNVTTEIKPTFQYMQNRGEFEMSDILAVCR----VMVDWLGLSEDERTLEPLSSILEDVPVFL 222
            RL FY DK+LNVT  I    +Y +          +   R    VMV WLGLS+DE T EPLS++LEDVP+ L
Sbjct:   34 RLRFYHDKDLNVTEGILSFARYNEGGHMVRAFGGVRPARDSFEVMVYWLGLSDDEATWEPLSTLLEDVPILL 105
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BLAST of mRNA_C-tenellus_contig10071.1.1 vs. uniprot
Match: A0A2P4Y8M4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y8M4_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.090e-5
Identity = 30/77 (38.96%), Postives = 40/77 (51.95%), Query Frame = 1 
Query:   13 LKRLLFYADKELNVTTEIKPTFQYMQNRG---------EFEMSDILAVCRVMVDWLGLSEDERTLEPLSSILEDVPV 216
            L RL FYAD  LN T EI    + + ++G         E   +     C ++V WLGL   E   EPLS++L+DVPV
Sbjct: 1203 LLRLKFYADAALNTTEEI---MELVSSQGMLLGVDKFIEHRYNQDFGGCELLVSWLGLQTIENAWEPLSTLLQDVPV 1276
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10071.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KAI3_9PHAE5.770e-1546.43Chromo domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JVS6_9PHAE7.280e-1446.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE8.190e-1446.43Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A3R6WKY8_9STRA5.370e-847.22Chromo domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A2P4Y8M4_9STRA2.090e-538.96Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10071contigC-tenellus_contig10071:236..502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size246
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789113.759948-CDS-C-tenellus_contig10071:235..3701680789113.759948-CDS-C-tenellus_contig10071:235..370Choristocarpus tenellus KU2346CDSC-tenellus_contig10071 236..370 +
1680789113.7693303-CDS-C-tenellus_contig10071:391..5021680789113.7693303-CDS-C-tenellus_contig10071:391..502Choristocarpus tenellus KU2346CDSC-tenellus_contig10071 392..502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10071.1.1prot_C-tenellus_contig10071.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10071 236..502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10071.1.1

>prot_C-tenellus_contig10071.1.1 ID=prot_C-tenellus_contig10071.1.1|Name=mRNA_C-tenellus_contig10071.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=82bp
MVQWLKRLLFYADKELNVTTEIKPTFQYMQNRGEFEMSDILAVCRVMVDW
LGLSEDERTLEPLSSILEDVPVFLCKQLKKLK
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mRNA from alignment at C-tenellus_contig10071:236..502+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10071.1.1 ID=mRNA_C-tenellus_contig10071.1.1|Name=mRNA_C-tenellus_contig10071.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=267bp|location=Sequence derived from alignment at C-tenellus_contig10071:236..502+ (Choristocarpus tenellus KU2346)
ATGGTGCAGTGGCTAAAGAGGTTGTTGTTCTATGCAGACAAGGAGCTGAA
CGTGACCACGGAGATAAAGCCAACATTCCAGTACATGCAGAACCGGGGAG
AATTTGAAATGTCTGATATTCTGGCAGTGTGCAGGGTAGAGGGATATGAA
TACTAGGTTATGGTGGATTGGTTGGGATTAAGTGAGGACGAGAGGACATT
GGAGCCACTCTCTTCCATTTTAGAGGATGTCCCTGTCTTTCTATGTAAAC
AGTTGAAGAAACTGAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10071:236..502+

>mRNA_C-tenellus_contig10071.1.1 ID=mRNA_C-tenellus_contig10071.1.1|Name=mRNA_C-tenellus_contig10071.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=246bp|location=Sequence derived from alignment at C-tenellus_contig10071:236..502+ (Choristocarpus tenellus KU2346)
ATGGTGCAGTGGCTAAAGAGGTTGTTGTTCTATGCAGACAAGGAGCTGAA
CGTGACCACGGAGATAAAGCCAACATTCCAGTACATGCAGAACCGGGGAG
AATTTGAAATGTCTGATATTCTGGCAGTGTGCAGGGTTATGGTGGATTGG
TTGGGATTAAGTGAGGACGAGAGGACATTGGAGCCACTCTCTTCCATTTT
AGAGGATGTCCCTGTCTTTCTATGTAAACAGTTGAAGAAACTGAAG
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