mRNA_C-tenellus_contig10067.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig10067.1.1 vs. uniprot
Match: D7FLP3_ECTSI (DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLP3_ECTSI) HSP 1 Score: 256 bits (655), Expect = 7.600e-73 Identity = 132/226 (58.41%), Postives = 173/226 (76.55%), Query Frame = 3 Query: 324 GGYEMEDGLNPSQQEAVVSPVGPVRVVAGPGSGKTRVLTRRVAHLVRNLSAPPWSILAVTFTNKAAAEMRGRVAKILGKDVTGQITLGTFHSVCARLMRRFGEHLPALIPGLDRQFTIFDTDDSRKLVAEIIKEMGLDSTKVKPQWFISQMSWLKSQGKGPNDVME-----LNKGRGGGTISAEKKKMLKTLAELFPIYQRRLAESNAVDFDDLLLVTLRLLKENK 986 G ++D LN SQ++AV + VG VRVVAGPGSGKTRVLTRR+AHLVRN+ AP WSILAVTFT KA+ EMR RV K +G+DV+GQ+ LGTFHS+CARL+RR G+ LPA++PGLD +F+IFDT+DSR+L+ +IIKEMG D +VKP S +S LKSQG GP D+ + L +G+ G + K + K +AE++ YQ RL +SNA+DFDD++LV LRLL+++K Sbjct: 78 GASALDDELNESQRDAVFAEVGAVRVVAGPGSGKTRVLTRRIAHLVRNVGAPAWSILAVTFTKKASEEMRARVRKTVGEDVSGQVALGTFHSICARLLRRHGDALPAVVPGLDGRFSIFDTEDSRRLLTDIIKEMGQDIKEVKPNMMRSSISKLKSQGLGPQDIAKKSEDMLERGKSTGFVGG-KARHAKMVAEIYTKYQARLIQSNALDFDDIILVALRLLRQDK 302
BLAST of mRNA_C-tenellus_contig10067.1.1 vs. uniprot
Match: A0A1V2LZP9_9FIRM (DNA helicase n=1 Tax=Epulopiscium sp. SCG-B11WGA-EpuloA1 TaxID=1710701 RepID=A0A1V2LZP9_9FIRM) HSP 1 Score: 166 bits (421), Expect = 7.810e-46 Identity = 92/216 (42.59%), Postives = 135/216 (62.50%), Query Frame = 3 Query: 336 MEDGLNPSQQEAVVSPVGPVRVVAGPGSGKTRVLTRRVAHLVRNLSAPPWSILAVTFTNKAAAEMRGRVAKILGKDVTGQITLGTFHSVCARLMRRFGEHLPALIPGLDRQFTIFDTDDSRKLVAEIIKEMGLDSTKVKPQWFISQMSWLKSQGKGPNDVMELNKGRGGGTISAEKKKMLKTLAELFPIYQRRLAESNAVDFDDLLLVTLRLLKEN 983 M +GLN Q++AV+ GP+ V+AG GSGKT+VLT R+AHL+ N + PWSILA+TFTNK+A EM+ R++ ++G+ T + + TFHS+C R++RR GE L G ++ FTI+D+ D + LV E++K ++ +KP I+ +S K+Q PN+ + E K LAE++ YQ +L E+NA DFDDLLL T L + N Sbjct: 1 MLEGLNEMQKQAVLHTEGPLLVLAGAGSGKTKVLTHRIAHLINNKNVAPWSILAITFTNKSAKEMKERISGLIGEANTRDMWVSTFHSMCVRILRRDGERL-----GFNKYFTIYDSSDQKALVKEVMKSKNINEKTLKPSEVIAYISSNKNQFILPNEAI------------TESNFRTKILAEIYLTYQYKLKENNACDFDDLLLNTCVLFQNN 199
BLAST of mRNA_C-tenellus_contig10067.1.1 vs. uniprot
Match: A0A402AI73_9CHLR (DNA helicase n=5 Tax=Dictyobacter TaxID=2024965 RepID=A0A402AI73_9CHLR) HSP 1 Score: 176 bits (445), Expect = 5.650e-45 Identity = 94/209 (44.98%), Postives = 134/209 (64.11%), Query Frame = 3 Query: 345 GLNPSQQEAVVSPVGPVRVVAGPGSGKTRVLTRRVAHLVRNLSAPPWSILAVTFTNKAAAEMRGRVAKILGKDVTGQITLGTFHSVCARLMRRFGEHLPALIPGLDRQFTIFDTDDSRKLVAEIIKEMGLDSTKVKPQWFISQMSWLKSQGKGPNDVMELNKGRGGGTISAEKKKMLKTLAELFPIYQRRLAESNAVDFDDLLLVTLRL 971 GLN QQEAV + GPV ++AGPGSGKTRV+T R+AHLV+ PW ILAVTFTNKAA EMR R+ K++G + ++ +GTFH++CAR++R EHL L GL R F I DTDD L+ + IKE+ LD + +P + +S K+ GP+ + EL K + + A +F +YQ+ + ++N+VDFDDL+++T +L Sbjct: 11 GLNQPQQEAVTTTEGPVLILAGPGSGKTRVITHRIAHLVQQEQVSPWRILAVTFTNKAAREMRERMEKLVGVNEAKEMMIGTFHAICARVLRTEAEHLAPL--GLSRSFVILDTDDQNTLLKQAIKELNLDEKQYRPATIQALISRAKNDMHGPDQMAEL-----------ATKYIEEVAARVFKVYQKMMRKNNSVDFDDLIMLTEQL 206
BLAST of mRNA_C-tenellus_contig10067.1.1 vs. uniprot
Match: A0A3D4JH82_9CHLR (DNA helicase (Fragment) n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A3D4JH82_9CHLR) HSP 1 Score: 168 bits (426), Expect = 6.540e-45 Identity = 98/214 (45.79%), Postives = 133/214 (62.15%), Query Frame = 3 Query: 342 DGLNPSQQEAVVSPVGPVRVVAGPGSGKTRVLTRRVAHLVRNLSAPPWSILAVTFTNKAAAEMRGRVAKILGKDVTGQITLGTFHSVCARLMRRFGEHLPALIPGLDRQFTIFDTDDSRKLVAEIIKEMGLDSTKVKPQWFISQMSWLKSQGKGPNDVMELNKGRGGGTISAEKKKMLKTLAELFPIYQRRLAESNAVDFDDLLLVTLRLLKEN 983 D LNP Q++AV + GPV VVAGPGSGKTRVLT+R+ +L+ N PW ILAVTFTNKAA EM RV I+ + + +GTFHS+CAR++RR EHLP L+ F IFD+DD + LV II+EM L+ + + +S K+ P+D I+ + +++K ++ YQ+RL SNAVDFDD+L+ T RLL+EN Sbjct: 18 DKLNPGQRKAVTAQDGPVLVVAGPGSGKTRVLTQRIVYLIANQGIRPWQILAVTFTNKAAKEMGERVKAIINEQAIEGMMIGTFHSICARILRRESEHLP-----LESNFVIFDSDDQQSLVKSIIREMNLNEKLYRASSVHAAISRAKNDLIFPDDY----------PINTYRDEVVK---RVYTEYQKRLIASNAVDFDDILVYTARLLEEN 213
BLAST of mRNA_C-tenellus_contig10067.1.1 vs. uniprot
Match: A0A7C5N180_9DELT (DNA helicase (Fragment) n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7C5N180_9DELT) HSP 1 Score: 168 bits (425), Expect = 7.240e-45 Identity = 101/239 (42.26%), Postives = 143/239 (59.83%), Query Frame = 3 Query: 342 DGLNPSQQEAVVSPVGPVRVVAGPGSGKTRVLTRRVAHLVRNLSAPPWSILAVTFTNKAAAEMRGRVAKILGKDVTGQITLGTFHSVCARLMRRFGEHLPALIPGLDRQFTIFDTDDSRKLVAEIIKEMGLDSTKVKPQWFISQMSWLKSQGKGPNDVMELNKGRGGGTISAEKKKMLKTLAELFPIYQRRLAESNAVDFDDLLLVTLRLLKENKGES*KRNNSVDRHSSIVVSVFGSI 1058 D LN Q EAV GP+ V AG GSGKTRV+T R+A+LV + PP+ ILAVTFTNKAA EMR R+ KILG VT ++ +GTFH+VC RL+RR+ E + G+ + F I+D D + L+ ++ ++ LD ++ PQ ++++S K + +GP D M L+ R I + F YQ+RL +SNAVDF DLLL LR L+ + + K+ S R S ++V F + Sbjct: 13 DALNAPQAEAVAHVDGPMIVFAGAGSGKTRVITYRIANLVASHGVPPYRILAVTFTNKAAGEMRERLDKILGPSVTRELWIGTFHAVCVRLIRRYHESI-----GIGQNFVIYDDSDQKALMKRVLDDLNLDERRIAPQKVLARISREKQEARGPED-MSLD--RWDDEI----------IQRCFKAYQQRLRDSNAVDFSDLLLYVLRFLERDNDDDAKQLRS--RFSHVLVDEFQDV 231
BLAST of mRNA_C-tenellus_contig10067.1.1 vs. uniprot
Match: A0A139D7Z1_9FIRM (DNA helicase n=3 Tax=Halanaerobium TaxID=2330 RepID=A0A139D7Z1_9FIRM) HSP 1 Score: 164 bits (414), Expect = 1.780e-44 Identity = 95/216 (43.98%), Postives = 136/216 (62.96%), Query Frame = 3 Query: 333 EMEDGLNPSQQEAVVSPVGPVRVVAGPGSGKTRVLTRRVAHLVRNLSAPPWSILAVTFTNKAAAEMRGRVAKILGKDVTGQITLGTFHSVCARLMRRFGEHLPALIPGLDRQFTIFDTDDSRKLVAEIIKEMGLDSTKVKPQWFISQMSWLKSQGKGPNDVMELNKGRGGGTISAEKKKMLKTLAELFPIYQRRLAESNAVDFDDLLLVTLRLLKE 980 E+ LN +Q+EAV GP V+AG GSGKTRVLTRR+ +L+ + P++ILAVTFTNKAA EM+ RV +++G V + + TFHS C R++RR E L G ++ F IFD+ D RKLV E++K LD K+KP+ ++++S K++ K P + L+ G KT A+++ YQ+RL E+NA+DFDDL+ T+RL KE Sbjct: 5 EILKNLNQAQKEAVKHHQGPELVLAGAGSGKTRVLTRRIGYLINHYGVSPYNILAVTFTNKAANEMKERVKEMVG-GVNSSLWVSTFHSFCVRILRREAEKL-----GYNKNFVIFDSLDQRKLVKEVLKSKNLDPKKIKPRSVLNKISSAKNELKTPEQMSSLS----GSFFD-------KTAADIYEEYQKRLKENNAMDFDDLIQQTVRLFKE 203
BLAST of mRNA_C-tenellus_contig10067.1.1 vs. uniprot
Match: A0A419EHN5_9CHLR (DNA helicase n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A419EHN5_9CHLR) HSP 1 Score: 173 bits (439), Expect = 2.000e-44 Identity = 100/214 (46.73%), Postives = 138/214 (64.49%), Query Frame = 3 Query: 342 DGLNPSQQEAVVSPVGPVRVVAGPGSGKTRVLTRRVAHLVRNLSAPPWSILAVTFTNKAAAEMRGRVAKILGKDVTGQITLGTFHSVCARLMRRFGEHLPALIPGLDRQFTIFDTDDSRKLVAEIIKEMGLDSTKVKPQWFISQMSWLKSQGKGPNDVMELNKGRGGGTISAEKKKMLKTLAELFPIYQRRLAESNAVDFDDLLLVTLRLLKEN 983 D LN Q++AV + GPV V+AGPGSGKTRVLT+RVA+L+ + P+ ILAVTFTNKAA EM RV +LG++ T + LGTFHS+CARL+RR EHLP ++ F IFD DD ++V +IKE LD + +P + +S K ND+++ + I+ + +++K +F YQ+RL SNAVDFDDLL+ T RLL++N Sbjct: 5 DRLNAPQRKAVTAGTGPVLVLAGPGSGKTRVLTQRVAYLIASEGVRPYQILAVTFTNKAAREMEHRVQSLLGEEATQGMMLGTFHSICARLLRREAEHLP-----VESNFVIFDADDQERIVKSVIKEFNLDDKRFRPASVHASIS------KAKNDLIDAD----NYPITNYRDEVVK---RIFTEYQKRLITSNAVDFDDLLVYTARLLEDN 200
BLAST of mRNA_C-tenellus_contig10067.1.1 vs. uniprot
Match: A0A2I1V7Z4_9CORY (ATP-dependent DNA helicase n=5 Tax=Corynebacterium TaxID=1716 RepID=A0A2I1V7Z4_9CORY) HSP 1 Score: 174 bits (440), Expect = 2.170e-44 Identity = 98/212 (46.23%), Postives = 138/212 (65.09%), Query Frame = 3 Query: 345 GLNPSQQEAVVSPVGPVRVVAGPGSGKTRVLTRRVAHLVRNLSAPPWSILAVTFTNKAAAEMRGRVAKILGKDVTGQITLGTFHSVCARLMRRFGEHLPALIPGLDRQFTIFDTDDSRKLVAEIIKEMGLDSTKVKPQWFISQMSWLKSQGKGPNDVMELNKGRGGGTISAEKKKMLKTLAELFPIYQRRLAESNAVDFDDLLLVTLRLLKE 980 GLNP QQ AVV P+ +VAG GSGKT VLTRR+AHL++N S PW ILA+TFTNKAAAEMR RVA ++G + ++ + TFHSVC R++R+ + L+PGL+ FTI+D+DDSR+L+ I K+ LD K P+ + +S LK++ P D + N + T+A+++ YQRRL +SNA+DFDDL+ +R+ K+ Sbjct: 10 GLNPQQQAAVVHQGSPLLIVAGAGSGKTAVLTRRIAHLLQNRSVTPWQILAITFTNKAAAEMRERVAALVGPEAE-RMWVATFHSVCVRILRQQAQ----LVPGLNTNFTIYDSDDSRRLLGMIAKDFNLDLKKFTPRTLANAISNLKNELIDP-DTAQANAAQTHNPFET-------TVAQVYVEYQRRLRQSNALDFDDLIGEVVRIFKQ 208
BLAST of mRNA_C-tenellus_contig10067.1.1 vs. uniprot
Match: A0A3M1MU06_9CHLR (DNA helicase (Fragment) n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A3M1MU06_9CHLR) HSP 1 Score: 165 bits (417), Expect = 3.140e-44 Identity = 97/215 (45.12%), Postives = 133/215 (61.86%), Query Frame = 3 Query: 333 EMEDGLNPSQQEAVVSPVGPVRVVAGPGSGKTRVLTRRVAHLVRNLSAPPWSILAVTFTNKAAAEMRGRVAKILGKDVTGQITLGTFHSVCARLMRRFGEHLPALIPGLDRQFTIFDTDDSRKLVAEIIKEMGLDSTKVKPQWFISQMSWLKSQGKGPNDVMELNKGRGGGTISAEKKKMLKTLAELFPIYQRRLAESNAVDFDDLLLVTLRLLK 977 ++ +GLN QQ+AV + GPV V+AGPGSGKTRVLT R+A+L+ +L A P++ILAVTFTNKAA EM RV +LG G +T+GTFH+ CARL+RR E+LP +D + IFD DD LV + +K++ LD + +P + +S K++ +GP D N + ++ YQ+ L SNAVDFDDLLL T RLL+ Sbjct: 2 DLLNGLNIQQQQAVTAGTGPVLVLAGPGSGKTRVLTHRIAYLIGHLGARPYNILAVTFTNKAAREMNRRVEDLLGGQTRG-LTVGTFHAFCARLLRREAEYLP-----VDSNYVIFDADDQIGLVKQALKDLNLDEKRYRPYSLHAAISNAKNELRGPEDFPVENYRD-------------EVTRRVYEHYQKLLLASNAVDFDDLLLYTARLLE 197
BLAST of mRNA_C-tenellus_contig10067.1.1 vs. uniprot
Match: A0A4P6JYD1_9CHLR (DNA helicase n=2 Tax=Ktedonosporobacter rubrisoli TaxID=2509675 RepID=A0A4P6JYD1_9CHLR) HSP 1 Score: 173 bits (439), Expect = 3.470e-44 Identity = 95/209 (45.45%), Postives = 134/209 (64.11%), Query Frame = 3 Query: 345 GLNPSQQEAVVSPVGPVRVVAGPGSGKTRVLTRRVAHLVRNLSAPPWSILAVTFTNKAAAEMRGRVAKILGKDVTGQITLGTFHSVCARLMRRFGEHLPALIPGLDRQFTIFDTDDSRKLVAEIIKEMGLDSTKVKPQWFISQMSWLKSQGKGPNDVMELNKGRGGGTISAEKKKMLKTLAELFPIYQRRLAESNAVDFDDLLLVTLRL 971 GLN Q+EAV S GPV ++AGPGSGKTRV+T R+A+LV+ PW ILAVTFTNKAA EMR R+ K++G + ++ +GTFH++CAR++R ++L L GLDR F IFDTDD LV + +KE+ LD + +P + +S K++ P + E K + + A ++ +YQRRL +NAVDFDDLL++T +L Sbjct: 10 GLNEPQREAVTSTQGPVLILAGPGSGKTRVITHRIAYLVQREHIYPWRILAVTFTNKAAREMRERLEKLVGVSASKEMNIGTFHAICARVLRMEADYLAPL--GLDRSFVIFDTDDQASLVKQAVKELDLDEKQYRPPVMQAYISRAKNELLVPEQMAE-----------QASKYIEEVAARVYKVYQRRLRSNNAVDFDDLLMLTEQL 205 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10067.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10067.1.1 >prot_C-tenellus_contig10067.1.1 ID=prot_C-tenellus_contig10067.1.1|Name=mRNA_C-tenellus_contig10067.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=319bp MKQVLLATLAAAAVTLGSAFHRGLSSTLAPCRRHGIALLKVTRTTLLHGSback to top mRNA from alignment at C-tenellus_contig10067:3064..4749+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10067.1.1 ID=mRNA_C-tenellus_contig10067.1.1|Name=mRNA_C-tenellus_contig10067.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1686bp|location=Sequence derived from alignment at C-tenellus_contig10067:3064..4749+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10067:3064..4749+ >mRNA_C-tenellus_contig10067.1.1 ID=mRNA_C-tenellus_contig10067.1.1|Name=mRNA_C-tenellus_contig10067.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=957bp|location=Sequence derived from alignment at C-tenellus_contig10067:3064..4749+ (Choristocarpus tenellus KU2346)back to top |