mRNA_C-tenellus_contig10062.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10062.1.1
Unique NamemRNA_C-tenellus_contig10062.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig10062.1.1 vs. uniprot
Match: A0A6H5L1P3_9PHAE (Valine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1P3_9PHAE)

HSP 1 Score: 373 bits (957), Expect = 3.680e-124
Identity = 179/226 (79.20%), Postives = 198/226 (87.61%), Query Frame = 1 
Query:    4 GLVYRGDYMVNWSPSLQTAVSDLEVEYTEEQGKLYYFKYMLGGEHGGKGEYLSVATTRPETILGDTAVCVHPEDPRYKHLVGGKVVVPIQGREISIIADEYVEREFGTGVLKITPGHDPNDYEIGKRHSLPTINIMERDATIGKEGGEAYQGLDRFVCRERLWADMEKEGLVIKVEPHTQRVPRSQRGGEVIEPLVSSQWFVRTEGMGAQALEAVKEKRVKILPER 681
            GLVYRGDYMVNWSPSLQTAVSDLEVEY+EE GKLYYFKYM+ G  G +GE+LSVATTRPETILGDTAVCVHPED R+KHLVGGKVVVP+ GREI IIAD+YV+ EFGTG LKITPGHDPNDYEIGKRHSL TIN+ME+D T+ K  G AY G DRF CR  +WADME  GL +K EP+ QRVPRSQRGGEVIEPLVSSQWFV+TEGMGA+AL AV+EK ++ILPER
Sbjct:  313 GLVYRGDYMVNWSPSLQTAVSDLEVEYSEEDGKLYYFKYMVAG--GKEGEHLSVATTRPETILGDTAVCVHPEDERFKHLVGGKVVVPLSGREIPIIADDYVDMEFGTGALKITPGHDPNDYEIGKRHSLQTINLMEKDGTMAKTAG-AYAGQDRFDCRNNMWADMEAAGLALKAEPYLQRVPRSQRGGEVIEPLVSSQWFVKTEGMGAKALAAVQEKDIQILPER 535
[Close]
BLAST of mRNA_C-tenellus_contig10062.1.1 vs. uniprot
Match: D7FV40_ECTSI (Valine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV40_ECTSI)

HSP 1 Score: 372 bits (954), Expect = 4.670e-119
Identity = 178/227 (78.41%), Postives = 199/227 (87.67%), Query Frame = 1 
Query:    1 QGLVYRGDYMVNWSPSLQTAVSDLEVEYTEEQGKLYYFKYMLGGEHGGKGEYLSVATTRPETILGDTAVCVHPEDPRYKHLVGGKVVVPIQGREISIIADEYVEREFGTGVLKITPGHDPNDYEIGKRHSLPTINIMERDATIGKEGGEAYQGLDRFVCRERLWADMEKEGLVIKVEPHTQRVPRSQRGGEVIEPLVSSQWFVRTEGMGAQALEAVKEKRVKILPER 681
            +GLVYRGDYMVNWSPSLQTAVSDLEVEY+EE GKLYYFKYM+ G  G +GE+LSVATTRPETILGDTAVCVHPED R+KHLVGGKVVVP+ GREI IIAD+YV+ EFGTG LKITPGHDPNDYEIGKRHSL TIN+ME+D T+ +  G AY G DRF CR  +WADME  GL +K EP+ QRVPRSQRGGEVIEPLVSSQWFV+TEGMGA+AL AV+EK ++ILPER
Sbjct:  285 KGLVYRGDYMVNWSPSLQTAVSDLEVEYSEEDGKLYYFKYMVAG--GKEGEHLSVATTRPETILGDTAVCVHPEDERFKHLVGGKVVVPLSGREIPIIADDYVDMEFGTGALKITPGHDPNDYEIGKRHSLQTINLMEKDGTMAETAG-AYAGQDRFDCRNNMWADMEAAGLALKAEPYQQRVPRSQRGGEVIEPLVSSQWFVKTEGMGAKALAAVQEKDIQILPER 508
[Close]
BLAST of mRNA_C-tenellus_contig10062.1.1 vs. uniprot
Match: A0A7S2A8Z3_TRICV (Valine--tRNA ligase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A8Z3_TRICV)

HSP 1 Score: 352 bits (902), Expect = 1.610e-115
Identity = 165/228 (72.37%), Postives = 199/228 (87.28%), Query Frame = 1 
Query:    1 QGLVYRGDYMVNWSPSLQTAVSDLEVEYTEEQGKLYYFKYMLGGEHGGKGEYLSVATTRPETILGDTAVCVHPEDPRYKHLVGGKVVVPIQG-REISIIADEYVEREFGTGVLKITPGHDPNDYEIGKRHSLPTINIMERDATIGKEGGEAYQGLDRFVCRERLWADMEKEGLVIKVEPHTQRVPRSQRGGEVIEPLVSSQWFVRTEGMGAQALEAVKEKRVKILPER 681
            +GLVYRG+YMVNW+P L+TAVSDLEVEY+EE+GKLYYFKYM+ G  GG+ +YL VATTRPETI+GDTAVCVHPED R+KHL+G  VVVP+ G R I IIADEYV+ EFGTG LKITPGHDPNDY +GK++ L  IN+M +DAT+    G AY+G+DRF CRE+LW+DMEKEGLVIK +PHTQRVPRSQRGGE+IEPLVSSQWFV+TEGMGA+AL+AV++  +KI+P+R
Sbjct:   97 KGLVYRGEYMVNWAPLLKTAVSDLEVEYSEEEGKLYYFKYMVEG--GGEEDYLPVATTRPETIVGDTAVCVHPEDERFKHLIGKSVVVPMSGGRAIPIIADEYVDMEFGTGALKITPGHDPNDYALGKKYDLEIINVMNKDATMNGNAG-AYEGMDRFECREKLWSDMEKEGLVIKADPHTQRVPRSQRGGEIIEPLVSSQWFVKTEGMGAKALKAVEDGDIKIVPQR 321
[Close]
BLAST of mRNA_C-tenellus_contig10062.1.1 vs. uniprot
Match: A0A7S3XNU9_HETAK (Valine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNU9_HETAK)

HSP 1 Score: 361 bits (926), Expect = 2.430e-115
Identity = 170/228 (74.56%), Postives = 193/228 (84.65%), Query Frame = 1 
Query:    1 QGLVYRGDYMVNWSPSLQTAVSDLEVEYTEEQGKLYYFKYMLGGE-HGGKGEYLSVATTRPETILGDTAVCVHPEDPRYKHLVGGKVVVPIQGREISIIADEYVEREFGTGVLKITPGHDPNDYEIGKRHSLPTINIMERDATIGKEGGEAYQGLDRFVCRERLWADMEKEGLVIKVEPHTQRVPRSQRGGEVIEPLVSSQWFVRTEGMGAQALEAVKEKRVKILPER 681
            +GL+Y+GDYMVNWSP LQTAVSDLEVEY+EE+GKLYYFKYML     GG  ++L VATTRPETILGDTAVCVHPEDPRYKHL+G  VVVP QGREI IIADEYV+ EFGTG LKITPGHDPNDYE+GK+H+LPTINIM RDA+I + GG  Y GLDR  CRERLWADM   GLV+K +PHTQRVPRSQRGGEVIEP+VS+QWF R  GM  ++LEAV+   +KI+PER
Sbjct:  243 RGLIYKGDYMVNWSPHLQTAVSDLEVEYSEEEGKLYYFKYMLADPAEGGGADHLPVATTRPETILGDTAVCVHPEDPRYKHLIGKTVVVPTQGREIPIIADEYVDMEFGTGALKITPGHDPNDYELGKKHALPTINIMNRDASINEAGGP-YAGLDRIACRERLWADMGAAGLVLKADPHTQRVPRSQRGGEVIEPMVSTQWFCRMGGMAEKSLEAVRSGEIKIIPER 469
[Close]
BLAST of mRNA_C-tenellus_contig10062.1.1 vs. uniprot
Match: A0A7S3PW07_9STRA (Valine--tRNA ligase (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PW07_9STRA)

HSP 1 Score: 334 bits (856), Expect = 3.920e-112
Identity = 158/226 (69.91%), Postives = 191/226 (84.51%), Query Frame = 1 
Query:    7 LVYRGDYMVNWSPSLQTAVSDLEVEYTEEQGKLYYFKYMLGGEHGGKGEYLSVATTRPETILGDTAVCVHPEDPRYKHLVGGKVVVPIQG-REISIIADEYVEREFGTGVLKITPGHDPNDYEIGKRHSLPTINIMERDATIGKEGGEAYQGLDRFVCRERLWADMEKEGLVIKVEPHTQRVPRSQRGGEVIEPLVSSQWFVRTEGMGAQALEAVKEKRVKILPER 681
            LVYRG+YMVNW+P L+TAVSDLEVEYTEE+GKLY+FKYM+        E+L VATTRPETI+GDTAVCV+PED R+KHLVG  VVVP+ G R I +I+D+YV+ EFGTG LKITPGHDPNDY IGKR+ LP INIM +D ++ +  G+ Y GLDRF  R++LW DMEKEGLVIKV+PHTQR+PRSQRGGE+IEPLVSSQWFV+TEGMGA+A +AV++  +KI+PER
Sbjct:    1 LVYRGEYMVNWAPLLKTAVSDLEVEYTEEEGKLYFFKYMIEDSD----EFLPVATTRPETIMGDTAVCVNPEDDRFKHLVGKNVVVPMSGGRTIPVISDDYVDIEFGTGALKITPGHDPNDYAIGKRYDLPIINIMNKDGSLNENAGD-YNGLDRFDARDKLWEDMEKEGLVIKVDPHTQRIPRSQRGGEIIEPLVSSQWFVKTEGMGAKAYKAVEDGNIKIVPER 221
[Close]
BLAST of mRNA_C-tenellus_contig10062.1.1 vs. uniprot
Match: A0A1E7EWR8_9STRA (Valine--tRNA ligase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EWR8_9STRA)

HSP 1 Score: 350 bits (898), Expect = 4.470e-112
Identity = 161/228 (70.61%), Postives = 194/228 (85.09%), Query Frame = 1 
Query:    1 QGLVYRGDYMVNWSPSLQTAVSDLEVEYTEEQGKLYYFKYMLGGEHGGKGEYLSVATTRPETILGDTAVCVHPEDPRYKHLVGGKVVVPI-QGREISIIADEYVEREFGTGVLKITPGHDPNDYEIGKRHSLPTINIMERDATIGKEGGEAYQGLDRFVCRERLWADMEKEGLVIKVEPHTQRVPRSQRGGEVIEPLVSSQWFVRTEGMGAQALEAVKEKRVKILPER 681
            +GL+YRG+YMVNW+P L+TAVSDLEVEYTEE+GKLYYFKYM+ G  GGK E+L VATTRPETI+GDTA+CVHP+D RYK LVG + +VP+  GR I IIAD+YV+ EFGTG LKITPGHDPNDY IGK++ LP INIM +D ++    GE Y GLDRFV RE+LW DME E L IKV+PHTQRVPRSQRGGE+IEPLVSSQWFV+TEGMGA+AL+AV++  ++I+P+R
Sbjct:  124 KGLIYRGEYMVNWAPLLKTAVSDLEVEYTEEEGKLYYFKYMVDGTDGGKFEFLPVATTRPETIMGDTAICVHPDDERYKDLVGKEAIVPMGNGRTIPIIADDYVDMEFGTGALKITPGHDPNDYAIGKKYDLPIINIMNKDGSLNGNAGEQYNGLDRFVAREQLWKDMEDESLTIKVDPHTQRVPRSQRGGEIIEPLVSSQWFVKTEGMGAKALKAVEDGDIEIVPKR 351
[Close]
BLAST of mRNA_C-tenellus_contig10062.1.1 vs. uniprot
Match: B8CEW1_THAPS (Valine--tRNA ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEW1_THAPS)

HSP 1 Score: 345 bits (886), Expect = 2.710e-110
Identity = 166/235 (70.64%), Postives = 191/235 (81.28%), Query Frame = 1 
Query:    1 QGLVYRGDYMVNWSPSLQTAVSDLEVEYTEEQGKLYYFKYMLGGEHGGKGEYLSVATTRPETILGDTAVCVHPEDPRYKHLVGGKVVVPIQG--------REISIIADEYVEREFGTGVLKITPGHDPNDYEIGKRHSLPTINIMERDATIGKEGGEAYQGLDRFVCRERLWADMEKEGLVIKVEPHTQRVPRSQRGGEVIEPLVSSQWFVRTEGMGAQALEAVKEKRVKILPER 681
            +GLVYRG YMVNWSP L TAVSDLEVEYTEE+GKLYYFKYM+ G  GG  EYL VATTRPETI GDTAVCV+P D RYKHL+G + +VP+          R I II+DEYV+ EFGTG LKITPGHDPNDYE+GK+  L  +NIM +DAT+ KE GE Y+GLDRF  R+RLW+DME EGLVIKVEPHTQRVPRSQRGGE+IEPLVS QWFV+TEGMGA+AL AVK+  ++I+P R
Sbjct:  122 KGLVYRGTYMVNWSPGLMTAVSDLEVEYTEEEGKLYYFKYMVEG--GGDDEYLPVATTRPETIFGDTAVCVNPNDDRYKHLIGKRALVPMSSLTSKDSKPRSIPIISDEYVDIEFGTGALKITPGHDPNDYELGKKFDLEIMNIMNKDATMNKECGEKYEGLDRFEARDRLWSDMEDEGLVIKVEPHTQRVPRSQRGGEIIEPLVSKQWFVKTEGMGAKALAAVKDGDIEIVPSR 354
[Close]
BLAST of mRNA_C-tenellus_contig10062.1.1 vs. uniprot
Match: A0A1Z5K4B9_FISSO (Valine--tRNA ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K4B9_FISSO)

HSP 1 Score: 348 bits (892), Expect = 3.420e-110
Identity = 165/228 (72.37%), Postives = 194/228 (85.09%), Query Frame = 1 
Query:    1 QGLVYRGDYMVNWSPSLQTAVSDLEVEYTEEQGKLYYFKYMLGGEHGGKGEYLSVATTRPETILGDTAVCVHPEDPRYKHLVGGKVVVPIQG-REISIIADEYVEREFGTGVLKITPGHDPNDYEIGKRHSLPTINIMERDATIGKEGGEAYQGLDRFVCRERLWADMEKEGLVIKVEPHTQRVPRSQRGGEVIEPLVSSQWFVRTEGMGAQALEAVKEKRVKILPER 681
            +GLVYRG+YMVNW+P L+TAVSDLEVEY+EEQGKLYYFKYM+ G      E+L VATTRPETI+GDTAVCVHPED RYKHLVG KVVVP+ G R I IIADEYV+ EFGTG LKITPGHDPNDY +GK+  LP IN+M RD ++    G+ Y+G DRF CRE LWADMEKEGLVIKV+PH QRVPRSQRGGE+IEPL+SSQWFV+TEGMGA+AL+AV++  ++I+P+R
Sbjct:  246 KGLVYRGEYMVNWAPQLKTAVSDLEVEYSEEQGKLYYFKYMVDGSE----EFLPVATTRPETIVGDTAVCVHPEDERYKHLVGKKVVVPMSGGRTIPIIADEYVDMEFGTGALKITPGHDPNDYTLGKKFDLPIINVMNRDGSMNANAGK-YEGQDRFECRESLWADMEKEGLVIKVDPHNQRVPRSQRGGEIIEPLISSQWFVKTEGMGAKALKAVQDGDIQIVPQR 468
[Close]
BLAST of mRNA_C-tenellus_contig10062.1.1 vs. uniprot
Match: A0A7S4MJV7_9STRA (Valine--tRNA ligase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MJV7_9STRA)

HSP 1 Score: 347 bits (889), Expect = 5.020e-110
Identity = 163/228 (71.49%), Postives = 196/228 (85.96%), Query Frame = 1 
Query:    1 QGLVYRGDYMVNWSPSLQTAVSDLEVEYTEEQGKLYYFKYMLGGEHGGKGEYLSVATTRPETILGDTAVCVHPEDPRYKHLVGGKVVVPIQG-REISIIADEYVEREFGTGVLKITPGHDPNDYEIGKRHSLPTINIMERDATIGKEGGEAYQGLDRFVCRERLWADMEKEGLVIKVEPHTQRVPRSQRGGEVIEPLVSSQWFVRTEGMGAQALEAVKEKRVKILPER 681
            +GLVYRG+YMVNW+P LQTAVSDLEVEY+EE+GKLYYFKYM+ G  G + +YL VATTRPETI+GDTAVCVHPED RYKHLVG + VVP+ G R I IIAD+YV+ EFGTG LKITPGHDPNDY +GK++ LP +N+M +D ++    G +Y GLDRF CRE+LW+DME EGLVIK EPHTQRVPRSQRGGEVIEPLVSSQWFV+TEGMGA+AL+AV++  ++I+P+R
Sbjct:  209 KGLVYRGEYMVNWAPMLQTAVSDLEVEYSEEEGKLYYFKYMVDG--GTEEDYLPVATTRPETIVGDTAVCVHPEDERYKHLVGKECVVPLSGGRTIPIIADDYVDMEFGTGALKITPGHDPNDYALGKKYDLPIVNVMNKDGSMNGNAG-SYDGLDRFECREKLWSDMEGEGLVIKAEPHTQRVPRSQRGGEVIEPLVSSQWFVKTEGMGAKALKAVEDGSIQIVPQR 433
[Close]
BLAST of mRNA_C-tenellus_contig10062.1.1 vs. uniprot
Match: I2CQT9_NANGC (Valine--tRNA ligase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQT9_NANGC)

HSP 1 Score: 337 bits (864), Expect = 8.700e-110
Identity = 163/227 (71.81%), Postives = 188/227 (82.82%), Query Frame = 1 
Query:    4 GLVYRGDYMVNWSPSLQTAVSDLEVEYTE-EQGKLYYFKYMLGGEHGGKGEYLSVATTRPETILGDTAVCVHPEDPRYKHLVGGKVVVPIQG-REISIIADEYVEREFGTGVLKITPGHDPNDYEIGKRHSLPTINIMERDATIGKEGGEAYQGLDRFVCRERLWADMEKEGLVIKVEPHTQRVPRSQRGGEVIEPLVSSQWFVRTEGMGAQALEAVKEKRVKILPE 678
            GL+YRGDY+VNWSPSLQTAVSDLEVEY E E GKL++FKY +        ++L VATTRPETILGDTAVCVHPEDPRY+HL+G  V+VP  G REI IIAD YV+R+FGTG LKITPGHDPNDYE+GKRH+LP INIM RDA+I   GG+ YQG+DRF CRE LW DME EGL +KVE H QR+P SQRGGEVIEPLVSSQWFV+ +GM AQALE V++K ++ILPE
Sbjct:  306 GLIYRGDYLVNWSPSLQTAVSDLEVEYVEVEDGKLFFFKYPVANSD----DFLPVATTRPETILGDTAVCVHPEDPRYQHLIGKTVLVPRSGGREIPIIADTYVDRDFGTGALKITPGHDPNDYELGKRHNLPLINIMNRDASINANGGQ-YQGMDRFECREALWRDMEAEGLALKVEKHAQRLPVSQRGGEVIEPLVSSQWFVKMDGMAAQALEVVRKKELRILPE 527
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10062.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1P3_9PHAE3.680e-12479.20Valine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D7FV40_ECTSI4.670e-11978.41Valine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A7S2A8Z3_TRICV1.610e-11572.37Valine--tRNA ligase (Fragment) n=1 Tax=Trieres chi... [more]
A0A7S3XNU9_HETAK2.430e-11574.56Valine--tRNA ligase n=1 Tax=Heterosigma akashiwo T... [more]
A0A7S3PW07_9STRA3.920e-11269.91Valine--tRNA ligase (Fragment) n=1 Tax=Chaetoceros... [more]
A0A1E7EWR8_9STRA4.470e-11270.61Valine--tRNA ligase n=1 Tax=Fragilariopsis cylindr... [more]
B8CEW1_THAPS2.710e-11070.64Valine--tRNA ligase n=1 Tax=Thalassiosira pseudona... [more]
A0A1Z5K4B9_FISSO3.420e-11072.37Valine--tRNA ligase n=2 Tax=Fistulifera solaris Ta... [more]
A0A7S4MJV7_9STRA5.020e-11071.49Valine--tRNA ligase n=1 Tax=Odontella aurita TaxID... [more]
I2CQT9_NANGC8.700e-11071.81Valine--tRNA ligase n=1 Tax=Nannochloropsis gadita... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10062contigC-tenellus_contig10062:90..4859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FV40
PFAMsAnticodon_1,Val_tRNA-synt_C,tRNA-synt_1
Model size684
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01873
KEGG ReactionR03665
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Exons5
Evalue3e-113
EggNOG OGsCOG0525@1|root,KOG0432@2759|Eukaryota
EC6.1.1.9
Descriptionvalyl-tRNA aminoacylation
Cds size657
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10062.1.1prot_C-tenellus_contig10062.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10062 90..4832 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789113.5803025-CDS-C-tenellus_contig10062:89..2631680789113.5803025-CDS-C-tenellus_contig10062:89..263Choristocarpus tenellus KU2346CDSC-tenellus_contig10062 90..263 -
1680789113.5951116-CDS-C-tenellus_contig10062:1662..18231680789113.5951116-CDS-C-tenellus_contig10062:1662..1823Choristocarpus tenellus KU2346CDSC-tenellus_contig10062 1663..1823 -
1680789113.6068902-CDS-C-tenellus_contig10062:2304..24311680789113.6068902-CDS-C-tenellus_contig10062:2304..2431Choristocarpus tenellus KU2346CDSC-tenellus_contig10062 2305..2431 -
1680789113.6144812-CDS-C-tenellus_contig10062:2930..30361680789113.6144812-CDS-C-tenellus_contig10062:2930..3036Choristocarpus tenellus KU2346CDSC-tenellus_contig10062 2931..3036 -
1680789113.626359-CDS-C-tenellus_contig10062:4743..48321680789113.626359-CDS-C-tenellus_contig10062:4743..4832Choristocarpus tenellus KU2346CDSC-tenellus_contig10062 4744..4832 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789113.6347208-UTR-C-tenellus_contig10062:4832..48591680789113.6347208-UTR-C-tenellus_contig10062:4832..4859Choristocarpus tenellus KU2346UTRC-tenellus_contig10062 4833..4859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10062.1.1

>prot_C-tenellus_contig10062.1.1 ID=prot_C-tenellus_contig10062.1.1|Name=mRNA_C-tenellus_contig10062.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=219bp
MVNWSPSLQTAVSDLEVEYTEEQGKLYYFKYMLGGEHGGKGEYLSVATTR
PETILGDTAVCVHPEDPRYKHLVGGKVVVPIQGREISIIADEYVEREFGT
GVLKITPGHDPNDYEIGKRHSLPTINIMERDATIGKEGGEAYQGLDRFVC
RERLWADMEKEGLVIKVEPHTQRVPRSQRGGEVIEPLVSSQWFVRTEGMG
AQALEAVKEKRVKILPER*
back to top

mRNA from alignment at C-tenellus_contig10062:90..4859-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10062.1.1 ID=mRNA_C-tenellus_contig10062.1.1|Name=mRNA_C-tenellus_contig10062.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4770bp|location=Sequence derived from alignment at C-tenellus_contig10062:90..4859- (Choristocarpus tenellus KU2346)
CAGGGACTTGTGTATCGTGGGGACTACATGGTGAATTGGAGTCCTTCGCT
GCAGACGGCAGTCAGTGATCTGGAGGTGGAGTACACTGAGGAGCAGGGAA
AGTTGTATTACTTCAAGTGAGATATCTTGGGCTACATAACGGGCTAGATA
ATGCCCTGCCACCCCTGCTCTCAACAATTACACACACACACACACACGTA
CCTATGTGTGCTGTGCCTCTCAGATAATAGGTTAAAGTAAGCAGGTAGGT
AGTCTCTTTTTCATCCCCACTCGTTCAGCACTCCCTCTACTTTGGACCAC
ACACACCTGGGAGCCTGTGATTCTGTTTTGGAAGGTGTTTGTTCTCTTGT
ATGGATTTTATTGCTGTGGTCAACCTCGTTTCATTGATTCATCCCGTCAG
CAAGCTCATCTGGTTTTGTACACCATGTTGTGTGTGAGTCTTGTCCCTTC
CTATTCAGGTGCTTAGAGTGTTTGGTACAATAGTGCCCAATGCAATGACA
TGCTCCCAACCTGGTGAAACACCTCCAACCCAATAACCACAACTTGGCAA
CGTAATATAACCTTATGCAGTGTTTATCCAATGTTTTGGTATTGCACATG
ATATAGCATTCCTGGGCTGCAGAGGTCGTAGAGCAATTGGCCATGAGTGT
TGTCTAGGACATCAGGTGTTACAGAACAAGTGAGGTTGAGCATTTGCTGG
GCAGTGGACCATATATATAGAGTAAATAGGGTTAAGCTTTTGCTGAGGAA
CGTAGTTGAGAGGAAATGGTCCTTGCATTGTCGTGCACAGTGGGTGTAAT
AGAGCTATGTTGTTCTGGAAAGAGTGTTGTAGAGCAAATGGTCCTCAGCA
CTCTTGTGCACAACGGATGTTATAGAGCAATAGTCCCAAGTGTTACTTAG
GACAGTGAGTGTTGCAGAGCAAATGGGACTAAATATTTATTGGACAACAG
ATGCTACGGGTGATTGCAAGAGTCATACATATATTTTTTGTATTTGTAAT
GCTTTTGTCTTCTTTCTTCTTTCTTCTTTCTTCTTTCTTCTTTCTACCTG
CCAAATTTCTTGCTTATCTTGCTTTAGCTGCATGAAAACATCAAACTAAT
GCGCCAAAAGGTTTTCATTGAACGGACCGAAGCGATCGTTGTTCTGGACA
ACAGACATTATTTAGTTTGCAGGGCGAGGGGCAATGAATGTCGCTCTGAC
CATGGATGTTATAGAGCAGATGGACTTAGGGTATTATATGGACAATAGAC
TTCATAGTGCATCTAACCTGTGAACGTTGCTCTGGTTATTTGCGGGCCTT
CCAGGTCAAAATGCGCTGAAATTCCTATTATTAGGTTAATTATTGCCGAT
GTTGAACACTAATTTTTCAAGGTATGCTAAGGAGACAATACCAACCCAAG
AATACAGCATACCCCCCCCCTACTTCGAGTCCTCAATCCAAAGTTATACT
CTTGACTCAGGAATGTATGCTCAACTCGAAACAAAGCTCTAGCACAAGAG
TACCTCAGGGACACTCCTGCTGCCTGTCGAATAAGGTATTGTTATCCTTA
CGTTGTATGTACTGATGCAAGTATGTAATGTAGTTTCACGCACTTTTATC
TTTAGTTCTGTACGATACAAAGTAGTAATGTTCATAGCGGTATGATGGGT
CAGTCTTTGTTCAGAGATAATCGATGACTACGGCAAAGGCCCAGTGGATA
ATTAATATTCAATGTATGTCTACCATATAACTCAACCACCAGCTTTTGGG
CGATGAGCCTTACATGCGCCAAGTTCTTCAGCACTGCCTTTGGTGCATGA
CGCTGTTCTGTGTATTGCTGTAGGTATATGCTCGGGGGAGAACATGGAGG
AAAGGGGGAGTACTTGTCTGTGGCAACAACCAGGCCGGAGACTATCTTGG
GTGACACTGCTGTGTGCGTTCACCCAGAGGTGATGTGATGTGATGTGATG
TGATGTGTTGAATGCCTTTTTTTGCTTACTCTCAATATAGCATGTCTTTT
TATTATGTTTTATTGATTTTATTTTGAGAACCTGTATGTATTCGACTAAT
TTTTTGAAGGACTTTTATTGGTTTATTTGGTGATATGGTACGATGAAGAA
AAAGCTGTTGACGGTATATGTGGAAGCTGTTTTACCGATATGGGGTAAAT
GTGTACCATTATTTATGCCCCTCAGTCGACCTTCAGATTTTCCCTTGGTG
GATACCAGAATTTTCCGGATTAGTTGGCGGTCCGCTGCACTGTGTGTTCC
TATAGTTTATATGATTCAACTTGATGTGGCTTTCAATTTATTTTTTCTTC
CACTTAAAGTTTTTTTTGTTAATTAATGTTTTTTCCCTTTGTTATTAGAC
TTCTTTGATAGTGTCCCGTACACACACAGCTAACACACCCTCCAACCTTT
TTGTTTTATTCCCTTAATTTTTGTTCAGGACCCCCGGTACAAGCACCTAG
TTGGTGGCAAGGTTGTGGTACCCATTCAGGGGAGAGAGATCTCCATCATT
GCAGATGAGTATGTTGAGAGGGAGTTTGGAACAGGGGTGCTCAAGATAAC
ACCAGGTGTGCACATGTGTGTGTGTGTATATATATGTATAAATTTGTTGC
CTTGTCCATGTGTGTGCCTCTCTGTTGATTTTCAGTGTGCTGTGGCACTC
TAGAGCAATGAAACCAATCTGTAGGCGAAAGAGTCTTCCTCCACCCTGTG
CATTGGTGTGTGCTTTTGACGGTTTTATTATTCATGTTCCATAGATGCTG
TTTACAATTCGTTGCTGGTTAAGCCCCTCATTTTGTGTTAGCACCACAGA
GCCAGCTCCAGAGTGAGGGGTGTGATAGCTTGAAGCTTCAACGGTTTGTT
TTTATCTTTTTTCTAGTGGATACAACTATTCCTGTGGTACTGAGATATGC
CTGTGTCTCATTGTTTGATTATTTTTTTAATTACCTTTCGCAATGTTGTG
TTACCCCACAGAATATATCGTGTATATCCCGAATCCTATCACCAGTCAAC
ACACGACCCTAACCCTAGTTTTAACTCCCTGAAAAGGACACGATCCCAAC
GACTATGAGATTGGGAAGAGACACTCCCTCCCCACAATAAACATAATGGA
GAGGGACGCTACTATCGGCAAGGAGGGTGGGGAAGCATACCAGGGATTGG
ATCGGTTTGTTTGCAGGGAGAGGTTGTGGGCAGACATGGAGAAGGAGGTG
AAATATTTCATCATATTTTTAATTGTCAAGTGTTACTGTTATTGTCAATG
TTGTCAGTATTGATGTGCATTATTACCTTCATCATTAGTACAATTAAAAG
TGATGCAACACGGTTCAATCTATTTCTAAAACGGTATGGTACTTGTTACT
AACTATTGTAGGGTTGGTTGGAATCTCCTCAATGCAGATGGGGGCGAGGG
TGCTTGTGGGTGTTGTTCAACTAGGCACTTCCTTTGGTCCACTATATCTT
GAGAAGATTGCATTTTCTTGCTGCAACTTTTGCTCTGTTCTGTCTCTACC
TTTGTTTTGAGGGCGATAGGGAGGCATTGTCTGTTGTGTTGATGATGGCT
CATGTCCTGGCTCTAACTCTTAGCCTACAGGGGAATATTTTCTGCTGTAA
TGGATGGATCCTTCCCATAAACCTATCCCCAACTTATCTGTGCAAATATG
AACATTAAGTGCTAACCCTAGCCCTGACATGCACTTGTATCCCTATCCCT
AAGACATCTTTACATCCCTAACCCTTACCCTAAGTGCAGTGTATATATAG
TTAGGGATGCTAACCTGAATCGACCCTTGGTAGCTGCTACTGTTCACACC
AACGAAAGATTGTTGTCCTTACTGCGGTTGCACTACTTTGTTGGTGGGTT
GGATGGATGGATGGATAATGTATTTGTTTATCTGCTAGTTTCAAAAGGTT
ATGGTTTGTCCTTCTTCAGTATGTAGATTTGTAACTGGTGTTTGTAGGAA
AAAGGCGTGATTTCGATTTTTTCAAGACGATCTCAGTACCTGTACCAAGT
ACCTACTCGAGTACTGTACCACTTGAGTACTTCTAAAAGTACTGTACCAA
GTACTGGAAAGGAACTGTACTGTACTGTGTAACGCTCACTGTAGTTGAGA
GACAAAAACGTACTAGCACGTGTCATGCATCTTATCCCAAGTGCAAGGCA
TCTGTAACATATTTGATGCCTTCAGACAATCAATCCCAAAATGAACGTAA
CTCTTTTATGTTGTATCCGTAACATACAGCTTTTGTAATTGGAGTGCAAT
GTTGTCTGAGGCGCAGAACTTTGACGAGCTGATCGGTGATGATCTCCCGA
TAAACTGCGACAAACCAACATGATGCATTGCACCTGTTTTTGGTTGCTGT
GTGTCAAATTCAAATTCAAATATATGGAATGCAAAAAAAAAAAAACCGGT
TGGATGATGGAACAGGACCTACCTACCTGCCTCGATTGGCCTTTCAATCT
CAGGGAAATGGAACCCCACATTGTATTCCCCCACTTCTTACCTCTTCTTC
GGATGTTTTCCTGACCTGTGTCGACCGACCTGTCCTCTGCTCTGACCTCT
TGTCGTCTTACCCTACTTTTTATTTGTTTCTTTCAAATATTTAAAGGGTC
TGGTGATCAAGGTAGAGCCCCACACACAAAGGGTTCCACGGTCGCAGAGG
GGGGGTGAGGTGATTGAACCACTGGTATCTTCGCAGTGGTTTGTGCGTAC
GGAGGGGATGGGCGCCCAGGCGTTGGAGGCGGTCAAAGAGAAGAGGGTGA
AGATTCTGCCGGAGAGGTGA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10062:90..4859-

>mRNA_C-tenellus_contig10062.1.1 ID=mRNA_C-tenellus_contig10062.1.1|Name=mRNA_C-tenellus_contig10062.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=657bp|location=Sequence derived from alignment at C-tenellus_contig10062:90..4859- (Choristocarpus tenellus KU2346)
ATGGTGAATTGGAGTCCTTCGCTGCAGACGGCAGTCAGTGATCTGGAGGT
GGAGTACACTGAGGAGCAGGGAAAGTTGTATTACTTCAAGTATATGCTCG
GGGGAGAACATGGAGGAAAGGGGGAGTACTTGTCTGTGGCAACAACCAGG
CCGGAGACTATCTTGGGTGACACTGCTGTGTGCGTTCACCCAGAGGACCC
CCGGTACAAGCACCTAGTTGGTGGCAAGGTTGTGGTACCCATTCAGGGGA
GAGAGATCTCCATCATTGCAGATGAGTATGTTGAGAGGGAGTTTGGAACA
GGGGTGCTCAAGATAACACCAGGACACGATCCCAACGACTATGAGATTGG
GAAGAGACACTCCCTCCCCACAATAAACATAATGGAGAGGGACGCTACTA
TCGGCAAGGAGGGTGGGGAAGCATACCAGGGATTGGATCGGTTTGTTTGC
AGGGAGAGGTTGTGGGCAGACATGGAGAAGGAGGGTCTGGTGATCAAGGT
AGAGCCCCACACACAAAGGGTTCCACGGTCGCAGAGGGGGGGTGAGGTGA
TTGAACCACTGGTATCTTCGCAGTGGTTTGTGCGTACGGAGGGGATGGGC
GCCCAGGCGTTGGAGGCGGTCAAAGAGAAGAGGGTGAAGATTCTGCCGGA
GAGGTGA
back to top