mRNA_C-tenellus_contig1006.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1006.4.1
Unique NamemRNA_C-tenellus_contig1006.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1006.4.1 vs. uniprot
Match: D8LHK0_ECTSI (6-pyruvoyltetrahydropterin synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHK0_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 6.610e-74
Identity = 111/159 (69.81%), Postives = 133/159 (83.65%), Query Frame = 1
Query:    1 MARLLTLVIAFLACAW--AYHPVSGGGG----YSLGIRDSIMIAHSFKGEEFGPAQQVHGATYTVDVEFKSDALAPKSNWVIDIGAASDMLSEILAKYNFKNLDELFPEENTTTEFMCKVIFDEMAARC-KAFHGSLCIKLWESHKAWACYEGELEGEE 456
            M RLL +V   L      A++P +GGGG    YSLGIRDSIMIAHSF+G +FGPAQ++HGATYTVD EFK+DAL  KSNWV+DIGAAS+ML+ +L+KYNFKNL+E+FP +NTTTEFMCKVIFDE+AA+C K FHG+LCIKLWESHKAW CYEG++ GEE
Sbjct:    1 MMRLLAMVWVCLMAVLTSAHNPTAGGGGGHKGYSLGIRDSIMIAHSFEGPQFGPAQEMHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLAAVLSKYNFKNLNEIFPGQNTTTEFMCKVIFDELAAKCGKDFHGTLCIKLWESHKAWGCYEGDV-GEE 158          
BLAST of mRNA_C-tenellus_contig1006.4.1 vs. uniprot
Match: A0A7S2V5M2_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5M2_9STRA)

HSP 1 Score: 197 bits (500), Expect = 3.570e-62
Identity = 93/149 (62.42%), Postives = 118/149 (79.19%), Query Frame = 1
Query:    1 MARLLTLVIAFLACAWAYHPVSGGGGYSLGIRDSIMIAHSFKGEEFGPAQQVHGATYTVDVEFKSDALAPKSNWVIDIGAASDMLSEILAKYNFKNLDELFPEENTTTEFMCKVIFDEMAAR-CKAFHGSLCIKLWESHKAWACYEGEL 444
            M +++ ++      A+A+       GY+LG++DSIMIAHSF+GEEFGPAQ++HGATYTVDVEF +D L  K NWVIDIG AS++L ++LAKYNFKNLDELFP++NTTTEFMCKVIFD+M+A     F GSL +KLWESHKAWA Y+ +L
Sbjct:    9 MTQIIGILCIMFTLAYAHKK-----GYTLGVKDSIMIAHSFQGEEFGPAQKLHGATYTVDVEFMADVLESKCNWVIDIGLASEILGKVLAKYNFKNLDELFPDDNTTTEFMCKVIFDDMSAELANKFKGSLSVKLWESHKAWASYQDKL 152          
BLAST of mRNA_C-tenellus_contig1006.4.1 vs. uniprot
Match: A0A7S4DL62_HETAK (6-pyruvoyltetrahydropterin synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DL62_HETAK)

HSP 1 Score: 196 bits (498), Expect = 6.740e-62
Identity = 93/146 (63.70%), Postives = 115/146 (78.77%), Query Frame = 1
Query:    7 RLLTLVIAFLACAWAYHPVSGGGGYSLGIRDSIMIAHSFKGEEFGPAQQVHGATYTVDVEFKSDALAPKSNWVIDIGAASDMLSEILAKYNFKNLDELFPEENTTTEFMCKVIFDEMAARCKAFHGSLCIKLWESHKAWACYEGEL 444
            +L  LV+AF A             +SLG+RDSIMIAHSFKGEEFGPAQQ+HGATYTVDVEF+++ L  K NWV+DIG AS++LS +L KYNFKNL+ELFP++NTTTEFMCK IFD++AA  + F GS+C+KL ESHKAWA Y G++
Sbjct:   12 KLAALVLAFFASL-------AHAKFSLGVRDSIMIAHSFKGEEFGPAQQMHGATYTVDVEFEAEELVDKCNWVVDIGEASEILSNVLRKYNFKNLNELFPDDNTTTEFMCKAIFDDIAACLENFKGSMCVKLHESHKAWASYTGDV 150          
BLAST of mRNA_C-tenellus_contig1006.4.1 vs. uniprot
Match: W7T312_9STRA (6-pyruvoyltetrahydropterin synthase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T312_9STRA)

HSP 1 Score: 186 bits (473), Expect = 6.730e-58
Identity = 92/134 (68.66%), Postives = 107/134 (79.85%), Query Frame = 1
Query:   64 SGGGGYSLGIRDSIMIAHSFKGEEFGPAQQVHGATYTVDVEFKSDALAPKSNWVIDIGAASDMLSEILAKYNFKNLDELFPE-ENTTTEFMCKVIFDEMAA-----RCKA----FHGSLCIKLWESHKAWACYE 435
            + G  +SLGIRDSIMIAHSFKGE+FGPAQ +HGATYTVDV F+S  L PK+NWVIDIG AS  LS IL+KYNFKNLD++FPE ENTTTEFMC+ I  ++AA     R K+    F GS+C+KLWESHKAWACYE
Sbjct:   28 ASGFPFSLGIRDSIMIAHSFKGEQFGPAQNIHGATYTVDVTFRSKNLVPKNNWVIDIGEASTALSRILSKYNFKNLDQVFPEGENTTTEFMCRAIHRDLAAHFCTNRAKSKEERFKGSICVKLWESHKAWACYE 161          
BLAST of mRNA_C-tenellus_contig1006.4.1 vs. uniprot
Match: A0A836CJP8_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJP8_9STRA)

HSP 1 Score: 183 bits (464), Expect = 7.050e-57
Identity = 87/123 (70.73%), Postives = 101/123 (82.11%), Query Frame = 1
Query:   79 YSLGIRDSIMIAHSFKGEEFGPAQQVHGATYTVDVEFKSDALAPKSNWVIDIGAASDMLSEILAKYNFKNLDELFPEENTTTEFMCKVIFDEMAARCKA-FHGSLCIKLWESHKAWACYEGEL 444
            Y+LGIRDSIMIAHSFKG EFGPAQQ+HGATYT DVEF    L P  NWVIDIG AS+MLS +LA+YNFKNL+E+FP+ENTTTEFMC+ IFD +A  C   F G++ +KLWESHKAWA YEG +
Sbjct:   10 YTLGIRDSIMIAHSFKGAEFGPAQQMHGATYTCDVEFCCPELTPSLNWVIDIGEASNMLSGVLAEYNFKNLNEVFPDENTTTEFMCRRIFDGVARACAGRFCGTIRVKLWESHKAWASYEGAV 132          
BLAST of mRNA_C-tenellus_contig1006.4.1 vs. uniprot
Match: L1J9Q7_GUITC (6-pyruvoyltetrahydropterin synthase n=3 Tax=Guillardia theta TaxID=55529 RepID=L1J9Q7_GUITC)

HSP 1 Score: 179 bits (455), Expect = 8.330e-55
Identity = 84/135 (62.22%), Postives = 102/135 (75.56%), Query Frame = 1
Query:   43 AWAYHPVSGGGGYSLGIRDSIMIAHSFKGEEFGPAQQVHGATYTVDVEFKSDALAPKSNWVIDIGAASDMLSEILAKYNFKNLDELFPEENTTTEFMCKVIFDEMAARCKA-FHGSLCIKLWESHKAWACYEGEL 444
            A + H   GG  YSLG+RDSIMIAHSF G+EFGPAQ +HGATYTVDVEF  ++LAP+ NWV+DIG    ML ++L +YNFKNL+ELFP ENTTTEFMCK IF+ +    K  F GS+ +KLWESH AWA Y  ++
Sbjct:   51 ATSMHLRGGGERYSLGLRDSIMIAHSFTGKEFGPAQNMHGATYTVDVEFHVESLAPRLNWVLDIGEGMTMLKKVLGEYNFKNLNELFPGENTTTEFMCKKIFEGLCVELKGKFKGSITVKLWESHSAWASYTNDI 185          
BLAST of mRNA_C-tenellus_contig1006.4.1 vs. uniprot
Match: A0A7R9WRW2_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WRW2_9STRA)

HSP 1 Score: 161 bits (408), Expect = 7.320e-48
Identity = 82/153 (53.59%), Postives = 110/153 (71.90%), Query Frame = 1
Query:    4 ARLLTLVIAFLACAWAYHPVSGGGG--YSLGIRDSIMIAHSF-KGEEFGPAQQVHGATYTVDVEFKSDALAPKSNWVIDIGAASDMLSEILAKYNFKNLDELFPEEN-TTTEFMCKVIFDEMAAR----CKAFHGSLCIKLWESHKAWACYEG 438
            A +LT VI F         VS  G   ++LG+RDS+MIAHSF +   FGPA ++HGATYT DVEF++D+L P++NWVIDIG AS+++S++L +YN +NLDE+FP++  TTTEFM + I D++ AR    C  F G +C+KLWESHKAWA Y G
Sbjct:   10 ASILTFVITFCWLCTGTLCVSAPGNMPFTLGVRDSLMIAHSFHQHPSFGPAGKMHGATYTCDVEFQTDSLHPETNWVIDIGKASEIVSDVLKRYNLQNLDEVFPDKTMTTTEFMARQIHDDIQARLATDCADFQGQVCVKLWESHKAWASYTG 162          
BLAST of mRNA_C-tenellus_contig1006.4.1 vs. uniprot
Match: A0A448ZT77_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZT77_9STRA)

HSP 1 Score: 157 bits (398), Expect = 2.060e-46
Identity = 76/126 (60.32%), Postives = 97/126 (76.98%), Query Frame = 1
Query:   79 YSLGIRDSIMIAHSFKGE-EFGPAQQVHGATYTVDVEFKSDALAPKSNWVIDIGAASDMLSEILAKYNFKNLDELFPEEN-TTTEFMCKVIFDE----MAARCKAFHGSLCIKLWESHKAWACYEG 438
            +SLG+RDS+MIAHSF G   FGPA  +HGATYT DV+F ++ L P++NWVIDIG A D+LS++L++YN KNLDE+FP++  TTTEFMCK I D+    +   CK F G++ IKLWESHKAWA Y G
Sbjct:   35 FSLGVRDSLMIAHSFHGHPSFGPAGGMHGATYTCDVDFLAEELHPETNWVIDIGKALDILSKVLSRYNLKNLDEVFPDKTMTTTEFMCKQIHDDIRELLETECKEFKGAVRIKLWESHKAWATYTG 160          
BLAST of mRNA_C-tenellus_contig1006.4.1 vs. uniprot
Match: A0A7S2A892_TRICV (6-pyruvoyltetrahydropterin synthase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A892_TRICV)

HSP 1 Score: 157 bits (397), Expect = 4.480e-46
Identity = 75/128 (58.59%), Postives = 97/128 (75.78%), Query Frame = 1
Query:   79 YSLGIRDSIMIAHSFKGE-EFGPAQQVHGATYTVDVEFKSDALAPKSNWVIDIGAASDMLSEILAKYNFKNLDELFPE-ENTTTEFMCKVIFDEMAARCKA----FHGSLCIKLWESHKAWACYEGEL 444
            ++LG+RDS+MIAHSF G   FGPA  +HGATYT DVEF++  L P+ NWVIDIG ASD+L+ +L++YN KNLDE+FP+ E TTTEFMC+VI +++  R K     F G + +KLWESHKAW  Y GE+
Sbjct:   58 FALGVRDSLMIAHSFHGHPSFGPAGGMHGATYTCDVEFRTSHLHPECNWVIDIGLASDVLTSVLSRYNMKNLDEVFPDGEMTTTEFMCRVIHEDLCRRLKEEGAEFEGEIRVKLWESHKAWGSYVGEV 185          
BLAST of mRNA_C-tenellus_contig1006.4.1 vs. uniprot
Match: A0A7S0WCE1_9CRYP (6-pyruvoyltetrahydropterin synthase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WCE1_9CRYP)

HSP 1 Score: 157 bits (397), Expect = 4.910e-46
Identity = 75/125 (60.00%), Postives = 92/125 (73.60%), Query Frame = 1
Query:   76 GYSLGIRDSIMIAHSFKGEEFGPAQQVHGATYTVDVEFKSDALAPKSNWVIDIGAASDMLSEILAKYNFKNLDELFPEENTTTEFMCKVIFDEMAARCKAFH--GSLCIKLWESHKAWACYEGEL 444
            GY+LG+RDSIMIAHSFKG EFGPAQ +HGATYTVD+E   + LA K NWV+DIG    +L E+L  YN+KNLDE+FP  NTTTEFM + I + +AA  K     GS+ +KLWESH AWA Y  ++
Sbjct:   64 GYTLGVRDSIMIAHSFKGPEFGPAQGMHGATYTVDLEVSVEKLADKLNWVVDIGVLLGILKEVLGVYNYKNLDEVFPGVNTTTEFMSQKIHEGVAAALKKHGVVGSMSVKLWESHNAWATYSNKI 188          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1006.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHK0_ECTSI6.610e-7469.816-pyruvoyltetrahydropterin synthase n=2 Tax=Ectoca... [more]
A0A7S2V5M2_9STRA3.570e-6262.426-pyruvoyltetrahydropterin synthase n=1 Tax=Fibroc... [more]
A0A7S4DL62_HETAK6.740e-6263.706-pyruvoyltetrahydropterin synthase n=1 Tax=Hetero... [more]
W7T312_9STRA6.730e-5868.666-pyruvoyltetrahydropterin synthase n=3 Tax=Monodo... [more]
A0A836CJP8_9STRA7.050e-5770.736-pyruvoyltetrahydropterin synthase n=1 Tax=Tribon... [more]
L1J9Q7_GUITC8.330e-5562.226-pyruvoyltetrahydropterin synthase n=3 Tax=Guilla... [more]
A0A7R9WRW2_9STRA7.320e-4853.596-pyruvoyltetrahydropterin synthase n=1 Tax=Craspe... [more]
A0A448ZT77_9STRA2.060e-4660.326-pyruvoyltetrahydropterin synthase n=1 Tax=Pseudo... [more]
A0A7S2A892_TRICV4.480e-4658.596-pyruvoyltetrahydropterin synthase n=1 Tax=Triere... [more]
A0A7S0WCE1_9CRYP4.910e-4660.006-pyruvoyltetrahydropterin synthase n=1 Tax=Hemise... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1006contigC-tenellus_contig1006:6874..7655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LHK0
PFAMsPTPS
Model size459
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons3
Evalue1.08e-74
EggNOG OGs2CYMG@1|root,2S557@2759|Eukaryota
Ec32 ortholog description6-pyruvoyl tetrahydropterin synthase/QueD family protein
Ec32 orthologEc-10_002190.1
Description6-pyruvoyl tetrahydropterin synthase
Cds size459
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789113.3422728-CDS-C-tenellus_contig1006:6873..70261680789113.3422728-CDS-C-tenellus_contig1006:6873..7026Choristocarpus tenellus KU2346CDSC-tenellus_contig1006 6874..7026 +
1680789113.357696-CDS-C-tenellus_contig1006:7217..74031680789113.357696-CDS-C-tenellus_contig1006:7217..7403Choristocarpus tenellus KU2346CDSC-tenellus_contig1006 7218..7403 +
1680789113.3659942-CDS-C-tenellus_contig1006:7535..76551680789113.3659942-CDS-C-tenellus_contig1006:7535..7655Choristocarpus tenellus KU2346CDSC-tenellus_contig1006 7536..7655 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1006.4.1prot_C-tenellus_contig1006.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1006 6874..7655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1006.4.1

>prot_C-tenellus_contig1006.4.1 ID=prot_C-tenellus_contig1006.4.1|Name=mRNA_C-tenellus_contig1006.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=153bp
MARLLTLVIAFLACAWAYHPVSGGGGYSLGIRDSIMIAHSFKGEEFGPAQ
QVHGATYTVDVEFKSDALAPKSNWVIDIGAASDMLSEILAKYNFKNLDEL
FPEENTTTEFMCKVIFDEMAARCKAFHGSLCIKLWESHKAWACYEGELEG
EE*
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mRNA from alignment at C-tenellus_contig1006:6874..7655+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1006.4.1 ID=mRNA_C-tenellus_contig1006.4.1|Name=mRNA_C-tenellus_contig1006.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=782bp|location=Sequence derived from alignment at C-tenellus_contig1006:6874..7655+ (Choristocarpus tenellus KU2346)
ATGGCGCGCTTGCTCACCCTAGTGATCGCATTTCTGGCATGTGCTTGGGC CTATCATCCTGTGAGCGGCGGCGGTGGCTATTCGTTGGGCATACGCGATT CAATCATGATCGCTCACAGTTTCAAGGGGGAGGAATTCGGCCCAGCCCAG CAGGTGTTTCCAACTTCCCAGTGCCTCAATGTAGATGTGTTTCTGGAGGA TGGCCAACGCGTACCCATCAACGCACACCCACTTCACTTTTGATACCATC CATTCTCGTTAATACTGGTACTGTTGTATCATTGGGGTGAATCTTAAAGA ACCACCTGATCTGCAACCCCCCCACCATTACGCTCTCTTCGTAGGTTCAC GGGGCGACGTATACGGTTGATGTCGAATTCAAGAGCGATGCGTTGGCCCC TAAGTCTAACTGGGTGATTGACATTGGAGCTGCTTCAGATATGCTTTCAG AAATTCTCGCCAAATACAACTTCAAGAACCTGGACGAGCTTTTCCCAGAA GAGAACACCACCACTGAGTTCATGTGCAAGGTTGGTTCAGACCTTGGAGC GTAAGAGATCTACTTGAAGCTATTGCTGTCTGTGAAGGGGACAAATCGGA CCTTCCTAACCTTGTGCCTTCGCTATCTTATTCGCACACACCCTGTTGGA TGCGCGTTCCAGGTTATCTTCGACGAGATGGCAGCCAGGTGTAAGGCTTT CCACGGGTCGCTCTGTATCAAGCTGTGGGAAAGTCATAAGGCGTGGGCAT GCTACGAGGGAGAACTTGAAGGAGAAGAATGA
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Coding sequence (CDS) from alignment at C-tenellus_contig1006:6874..7655+

>mRNA_C-tenellus_contig1006.4.1 ID=mRNA_C-tenellus_contig1006.4.1|Name=mRNA_C-tenellus_contig1006.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=459bp|location=Sequence derived from alignment at C-tenellus_contig1006:6874..7655+ (Choristocarpus tenellus KU2346)
ATGGCGCGCTTGCTCACCCTAGTGATCGCATTTCTGGCATGTGCTTGGGC
CTATCATCCTGTGAGCGGCGGCGGTGGCTATTCGTTGGGCATACGCGATT
CAATCATGATCGCTCACAGTTTCAAGGGGGAGGAATTCGGCCCAGCCCAG
CAGGTTCACGGGGCGACGTATACGGTTGATGTCGAATTCAAGAGCGATGC
GTTGGCCCCTAAGTCTAACTGGGTGATTGACATTGGAGCTGCTTCAGATA
TGCTTTCAGAAATTCTCGCCAAATACAACTTCAAGAACCTGGACGAGCTT
TTCCCAGAAGAGAACACCACCACTGAGTTCATGTGCAAGGTTATCTTCGA
CGAGATGGCAGCCAGGTGTAAGGCTTTCCACGGGTCGCTCTGTATCAAGC
TGTGGGAAAGTCATAAGGCGTGGGCATGCTACGAGGGAGAACTTGAAGGA
GAAGAATGA
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