mRNA_C-tenellus_contig10057.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10057.1.1
Unique NamemRNA_C-tenellus_contig10057.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10057.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10057contigC-tenellus_contig10057:2..1730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1560
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789113.1306188-UTR-C-tenellus_contig10057:1..8391680789113.1306188-UTR-C-tenellus_contig10057:1..839Choristocarpus tenellus KU2346UTRC-tenellus_contig10057 2..839 -
1680789113.1599486-UTR-C-tenellus_contig10057:1311..17301680789113.1599486-UTR-C-tenellus_contig10057:1311..1730Choristocarpus tenellus KU2346UTRC-tenellus_contig10057 1312..1730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789113.1417866-CDS-C-tenellus_contig10057:839..11271680789113.1417866-CDS-C-tenellus_contig10057:839..1127Choristocarpus tenellus KU2346CDSC-tenellus_contig10057 840..1127 -
1680789113.1507084-CDS-C-tenellus_contig10057:1296..13111680789113.1507084-CDS-C-tenellus_contig10057:1296..1311Choristocarpus tenellus KU2346CDSC-tenellus_contig10057 1297..1311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10057.1.1prot_C-tenellus_contig10057.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10057 840..1311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10057.1.1

>prot_C-tenellus_contig10057.1.1 ID=prot_C-tenellus_contig10057.1.1|Name=mRNA_C-tenellus_contig10057.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=101bp
MGVERRCKVIFFEIGTERCLGSAFSSFLQHRGVQRRNLFIGLTFPKNFDF
HKSPKVTAERIRTTVSGKNYDPPLSCWIQAVSIVPFRICTLMTLIFHVFI
*
back to top

mRNA from alignment at C-tenellus_contig10057:2..1730-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10057.1.1 ID=mRNA_C-tenellus_contig10057.1.1|Name=mRNA_C-tenellus_contig10057.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1729bp|location=Sequence derived from alignment at C-tenellus_contig10057:2..1730- (Choristocarpus tenellus KU2346)
CAATGTCGAGTTGGGATTCACTTTCAAGCAGCTACCTCCAGCGGACGCCT
TACTGATCTCCTCGCGGTCGCAATAGCAGAACGGGTGAGGGAAAAGTTGC
GTTCACTCTACAGAAAACAAGAGCATAGTTTGCACTGGACCAACCAGGGC
TCGTGCCTTCCGTAGACTAACTAAGGTTTTCAACCCCAAAACATAAATAA
GTTTCGTGTCTGTTGGGGGGGGTCAATAGGACAGCAGGTCAAAGATCTTT
GAAGAACTCAATTATGTACTCCAAGTGTTGATACGAGATCGTACTACTGC
CAAAATCTGAGGAGGCACGGTTTTAGAGAGCAGGCATTTGAGTGACTGAT
CTATAAGGACGAAAAGGAAGAAGCCTGCAATTGATCGTACATGTTCACTC
AATATATTATTTTGGGAGAATGGGAGTGGAAAGGGTGAGACTCATTTCAG
TTCACATTGCAGAGGAGAATGCTAGCACAAGTCTTTGTTGAACTCAGTAT
GCCGCCAGATCTCGGGTTTGTTATTTCCGATTTGATACTTGATCGCCTGC
CTTCTTGCTCTTTCTCATATTCAGTATTCTGTTGTTGATGATGCTTGGAG
AAGAGGTGCAAGGTTATTTTCTTCGAGATAGGCACAGAACGCTGCCTTGG
GTCAGCTTTCTCCAGTTTTCTCCAGCATCGAGGAGTTCAACGGAGGAACC
TATTTATTGGACTCACCTTTCCCAAGAACTTCGATTTCCACAAATCACCG
AAAGTGACCGCCGAACGAATCAGAACCACTGTCTCCGGTAAGAACTATGA
CCCACCTTTGTCTTGCTGGATACAAGCAGTGTCTATCGTCCCTTTTCGGA
TTTGTACACTCATGACTTTGATATTTCATGTTTTCATATAGTCTGGAGCA
CATTTCAAGGTTGATGCGATTAGTGTGGGTTACCAGTTCACTTTAGAGCA
AGTGCTTTCCGCCTATATACCAGCAAGAGGAAGAAATACTGAGCAAGGCT
TACTTTTCTGACTGTCTGTAGGAGTCTGTTCCTCGAAAATACTGTTCTCC
GTCCACACTATATCACAGCTACTTTTCTTTCTTGACCTGCTTAGAGTAAC
CCTAACCCTTAAATATTTTTCATACTTTCCATGCTAACTTAAAGTAAATT
TTTCCAGCTCAATGATACCCTTACCTTACCCTATGTACAACCCGCCTTAA
AATGTGCTTCATTCCTCCAATCAGTTGCCCAATTGCTCCCCCTACCCTGT
CAGTTGATGATTAGTCATACTTGAATTCTGATGACAGATAGAGGCCTATA
GTATCTACAGTGCGGAGGGGGGTTAGATCAGGTCGTCTATTCGGGAATTG
ATGGGGTGTTGTAAAACACCCCAGTTTGATGCCCATTTTGTGAGCGAGCT
TCCTTCAAATTTGGCCTGGGTAGGGATATAGTAAAGGAAGGTGTGTTGGT
GCGTCCAGATGAAGGAGGTTGCCCTTACATCTGACATGTTCGTTGAGATG
ACACGAAAATCTCCGCAGGGTCACAGAGGGCCTGAATGGATGCCCAACCC
GCCCCCTCTAGGATATGCTGTAAGACAGAATCTGTCGCAACACAAGTAGA
TTTTGAGGTCATACTGATCAAGCCAATATTCACAGGAAGATATCAGTGTG
CTGTTAGGCGATACATAGAAGCAGTTACTTCCAAGTAACAGGCTCAAAGT
ATCTGGGAGGGGGTGGCGGCTGTCCATTT
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10057:2..1730-

>mRNA_C-tenellus_contig10057.1.1 ID=mRNA_C-tenellus_contig10057.1.1|Name=mRNA_C-tenellus_contig10057.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=303bp|location=Sequence derived from alignment at C-tenellus_contig10057:2..1730- (Choristocarpus tenellus KU2346)
ATGGGAGTGGAAAGGAGGTGCAAGGTTATTTTCTTCGAGATAGGCACAGA
ACGCTGCCTTGGGTCAGCTTTCTCCAGTTTTCTCCAGCATCGAGGAGTTC
AACGGAGGAACCTATTTATTGGACTCACCTTTCCCAAGAACTTCGATTTC
CACAAATCACCGAAAGTGACCGCCGAACGAATCAGAACCACTGTCTCCGG
TAAGAACTATGACCCACCTTTGTCTTGCTGGATACAAGCAGTGTCTATCG
TCCCTTTTCGGATTTGTACACTCATGACTTTGATATTTCATGTTTTCATA
TAG
back to top