mRNA_C-tenellus_contig10055.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10055.1.1
Unique NamemRNA_C-tenellus_contig10055.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10055.1.1 vs. uniprot
Match: D7FIK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK1_ECTSI)

HSP 1 Score: 311 bits (798), Expect = 8.480e-98
Identity = 171/239 (71.55%), Postives = 201/239 (84.10%), Query Frame = 3
Query:  456 YVILDYTVPGLGFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNK-TVQQIVIVVGVIATIIAIVLISVYAKQALSEALKDVEEDGIEGE 1169
            YVILDYTVPGLGFVADTL  FL+WVEDNPG G +AFA VYV TTVCFIPGSLLTLGAGL FGRALG  LG+L+GS AVL GAT+G++LAFLLGR+VLQ+QAQGLFN FK+L+AVN+AI++QGLKLV+LLRLSPVVPFSAFN+VMG+T V FRDYA+GC GFIPGTVA+VFIGT+AS LLG +  +          TVQ IV +VG IAT+IA+VLIS+YAK+AL++ L   EED +E E
Sbjct:   57 YVILDYTVPGLGFVADTLTSFLEWVEDNPGLGALAFALVYVFTTVCFIPGSLLTLGAGLVFGRALGTGLGILVGSLAVLAGATVGSILAFLLGRFVLQEQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFRDYAIGCVGFIPGTVAFVFIGTTASGLLGDDSEEXXXXXXXXXGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVL---EEDRVEQE 292          
BLAST of mRNA_C-tenellus_contig10055.1.1 vs. uniprot
Match: A0A7S2Y1P9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P9_9STRA)

HSP 1 Score: 284 bits (726), Expect = 2.530e-87
Identity = 167/270 (61.85%), Postives = 204/270 (75.56%), Query Frame = 3
Query:  399 KNDNLLKTGLLVVLVGLLVYVILDYTVPGLGFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDD------MDKDG-----GNKTVQQIVIVVGVIATIIAIVLISVYAKQALSEALKDVE-EDGIEGED 1172
            K + + K  L +VLVGL++YVI+DY+VP LG V   L +FL WVEDNP EG  AFA VY+  TV FIPGSLLTLGAGL FGRALGI  GV LGS AV+LGA+IGA++AF+LGRYVLQ  AQ LFN FKI++AV+KAIE+QGLKL LLLRLSPVVPF+AFN++MGLT +S +DY +GC G IPGTVAYVFIG+SAS +   + ND+       D DG      N TV  IVI+VG IAT+IA+ LIS YAK+AL+  L +VE E+  +G+D
Sbjct:   20 KKEKIRKLCLGLVLVGLIIYVIVDYSVPSLGNVNIVLSDFLAWVEDNPIEGVFAFACVYMFCTVAFIPGSLLTLGAGLVFGRALGIGRGVALGSFAVILGASIGAIIAFILGRYVLQDTAQVLFNKFKIMRAVDKAIESQGLKLCLLLRLSPVVPFNAFNYIMGLTAISLKDYTIGCLGIIPGTVAYVFIGSSASGIGDMKGNDEEQNDNTKDADGEESSSDNDTVFLIVIIVGAIATVIAVFLISWYAKKALNRILNEVELEENQDGKD 289          
BLAST of mRNA_C-tenellus_contig10055.1.1 vs. uniprot
Match: A0A7S3YEX9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEX9_HETAK)

HSP 1 Score: 248 bits (634), Expect = 8.430e-74
Identity = 141/258 (54.65%), Postives = 179/258 (69.38%), Query Frame = 3
Query:  399 KNDNLLKTGLLVVLVGLLVYVILDYTVPGLGFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGN------------KTVQQIVIVVGVIATIIAIVLISVYAKQALSEAL 1136
            + + L+K GLL +LVG+++YV+LDYT+P LG V   L  FL WVE++PGEG VAFA+VYVLTTV FIPGS+LTLGAGL FGRAL                      +AFLLGRYVLQ  AQ LFN F +L+AV+KAIE +GL+LV+LLRLSPV+PFSAFN+VMGLT+V FR Y LGC G +PGTVAYVFIGTSA+ LLG  D+   + +               + V  +V+VVG  AT++A+VLI+V +++AL   L
Sbjct:   44 RKNKLIKFGLLSLLVGIIIYVVLDYTLPSLGHVNRILTSFLLWVEEHPGEGVVAFASVYVLTTVLFIPGSILTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXXIAFLLGRYVLQDSAQKLFNKFSVLKAVDKAIENEGLRLVILLRLSPVIPFSAFNYVMGLTRVMFRQYVLGCVGMLPGTVAYVFIGTSAAGLLGDADDGSQESEXXXXXXXXXXXXXXXRLVNIVVLVVGAAATVLAVVLITVASRRALRRVL 301          
BLAST of mRNA_C-tenellus_contig10055.1.1 vs. uniprot
Match: A0A7S4JVV3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JVV3_9STRA)

HSP 1 Score: 206 bits (523), Expect = 6.440e-58
Identity = 114/257 (44.36%), Postives = 172/257 (66.93%), Query Frame = 3
Query:  381 ESHAFTKNDNLLKTGLLVVLVGLLVYVILDYTVPGLGFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNKTVQQIVIVVGVIATIIAIVLISVYAKQALSEALKDVEE 1151
            E+ +  +   + K  L +VL+G +V+VI+D T  G  ++ D ++ FL W+E+NP EGF  F  VYVL TV F+PG +LTLGAG  F  A G  LG+ +G+ +V +GA++G++LAFL+ RY+L++ A GL   F I +A+++A+E +GLK+++LLRLSPV+PF+A N+V G+T VSF+DY+L  F  +PGT+ YVF+G SA  L     + D      +K +    +VVGV+  I+A+ L S YAK+ L++ L   EE
Sbjct:    6 EARSALRRSRIKKLVLALVLIGFIVFVIIDSTTNG--YIKDGIQTFLRWIEENPIEGFFMFMGVYVLATVLFVPGLILTLGAGYVFSNAFGTGLGLFVGTISVFVGASLGSMLAFLISRYILREWAVGLTEKFPIFRAIDQALEEKGLKIIILLRLSPVIPFNALNYVCGVTAVSFKDYSLALFAMLPGTILYVFLGASAQSLATIGSSTD------SKALTISTVVVGVVLGIVAVALSSRYAKKELNKILDQEEE 254          
BLAST of mRNA_C-tenellus_contig10055.1.1 vs. uniprot
Match: A0A6H5JID7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID7_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 2.760e-56
Identity = 108/219 (49.32%), Postives = 155/219 (70.78%), Query Frame = 3
Query:  507 LKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNKT---VQQIVIVVGVIATIIAIVLISVYAKQALSEALKDVEED 1154
            L+   +W+EDNP  G V FA ++ L+T+ F+PG LLT+GAG+AFGRALG   GVL GS AVLLGA +  ++AF LGRYVL +QAQ     ++IL AVN AIE  G+K+++LLRLSP+VPFS FN + GLTKVS RDY LG  G +PGT+A+V+IG S +  +   + + M+    ++T   ++   ++VG +A ++AIV +++YA++AL +AL + E D
Sbjct:   93 LETSFEWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTM--NEQEAMNSGEADRTECIIRMATLIVGAVAAVLAIVAVTIYARRALKQALVESELD 309          
BLAST of mRNA_C-tenellus_contig10055.1.1 vs. uniprot
Match: A0A7S2A6Q3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6Q3_TRICV)

HSP 1 Score: 196 bits (498), Expect = 9.380e-54
Identity = 109/248 (43.95%), Postives = 161/248 (64.92%), Query Frame = 3
Query:  435 VLVGLLVYVILDYTVPGLGFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNKTVQQIVIVVGVIATIIAIVLISVYAKQALSEALKDVEEDGIEGEDKV 1178
            VLVGL+V++I+D    G  FV   ++  L W+E+NP  G   F AVY + TV F+PGSLLTLG+G  F  + G+  GVLL + AV +GAT+GAL+AF+LGRY+L+   + L   + + +A++KA+E +GL++++LLRLSP++PF+A N++ G+T VSF+ YA   F  +PGT+ +VF+G SA  L+      D    G    V    IVVGV+  +IAI L S YAK+ L++ L+  + D  E  D +
Sbjct:   52 VLVGLIVFIIVDSVTHG--FVKGAIEGLLQWIEENPIRGLFVFMAVYFVATVLFVPGSLLTLGSGFVFAESFGLGFGVLLATLAVFVGATLGALVAFILGRYLLRDWVENLTKKYNVFRAIDKALEEKGLRIMILLRLSPIIPFNALNYICGVTSVSFKHYAWANFAILPGTILFVFLGASAGSLV------DSGNGGDTPVVTIATIVVGVVFGVIAIALTSRYAKKELNKILEQEKTDETERTDNI 291          
BLAST of mRNA_C-tenellus_contig10055.1.1 vs. uniprot
Match: A0A7S2MII1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MII1_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.460e-52
Identity = 114/287 (39.72%), Postives = 179/287 (62.37%), Query Frame = 3
Query:  411 LLKTGLLVVLVGLLVYVILDYTVPGLGFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNKTVQQIVIVVGVIATIIAIVLISVYAKQALSEAL--KDVEEDGIEGEDKVLRLVTTEVKSTSPMEVDDPVCSQVVRNGI 1265
            L+K  L ++LVG ++YVI+D+       +   ++ FL+W+EDNP EG  AF  VY + T+ F PG +LTLGAG  F  ALG+ LGV+L + AV +GA+ G++ AFL+GRY+L+    GL   + I +AV+ A++ +GL++++LLRLSP++PF+A N+++G+T VSFRD+ +   G +PGT+ YVF+G+SA  L       D    G N  V+ + IV+G +  I+ + + S YA++ L   +  ++ E   +E ED    +   E+ S   MEV +   S   +NGI
Sbjct:   30 LIKIALGLLLVGFIIYVIVDFATSK--HLRTAMESFLNWIEDNPTEGVFAFMGVYFVATILFAPGLILTLGAGFVFANALGLGLGVVLATTAVFVGASTGSMAAFLIGRYLLRDWVVGLTKKYAIFEAVDVALKEKGLRIMILLRLSPLIPFNALNYIVGVTSVSFRDFTIAMIGILPGTLLYVFLGSSAGSLT------DSSSGGDNSAVRILTIVLGSVFGILGVCVTSYYARKELQNVISRREAEAAQLEVED----IGDKEMDSMLRMEVGESTESGENQNGI 304          
BLAST of mRNA_C-tenellus_contig10055.1.1 vs. uniprot
Match: A0A7S2PDT1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PDT1_9STRA)

HSP 1 Score: 191 bits (486), Expect = 1.650e-52
Identity = 108/230 (46.96%), Postives = 148/230 (64.35%), Query Frame = 3
Query:  435 VLVGLLVYVILDYTVPGLGFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNKTVQQIVIVVGVIATIIAIVLISVYAKQAL 1124
            +L+G + YVI D +  G G V DT+ +FL WVEDNP EG  AF  VY + TV FIPG++LTLGAG  F  A G+  GVLL SAAV +GA+ GA+ +FLLGRY+LQ     L   + + +A++ A+   G K++ LLRLSP++PF+A N++ G+T +SFRD  L  F  +PGT+ YVF+G+SA  L       D +  G ++T   I +V GVI   +AI   S YAK+ L
Sbjct:   30 ILIGFIAYVIYD-SASGEGRVTDTVDDFLQWVEDNPTEGVFAFIGVYFVATVLFIPGTILTLGAGFVFSSAFGLGPGVLLASAAVFVGASTGAIASFLLGRYLLQDWVTTLTQKYTVFEAIDGALTHNGFKIMSLLRLSPIIPFNALNYIAGVTSISFRDNTLALFFILPGTILYVFLGSSAGSL------SDSESSGSDQTTTIITVVFGVIFGFLAIAATSYYAKKEL 252          
BLAST of mRNA_C-tenellus_contig10055.1.1 vs. uniprot
Match: A0A7S2JYW7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JYW7_9STRA)

HSP 1 Score: 191 bits (485), Expect = 1.920e-52
Identity = 107/246 (43.50%), Postives = 158/246 (64.23%), Query Frame = 3
Query:  435 VLVGLLVYVILDYTVPGLGFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNKTVQQIVIVVGVIATIIAIVLISVYAKQALSEALKDVEEDGIEGED 1172
            +L+  + YVI+D +  G G V  T+++FLDWVEDNP EG  AF  VY + TV FIPG++LTLGAG  F  A G+ +GVLL S AV +GA+ GAL +FLLGRY+L+     L + +++  A++ A+   G K++ LLRLSP++PF+A N++ G+T VSFRD AL     +PGTV YVF+G+SA  L       D +  G ++T   I +V G++  ++ I   S YAK+ L+  +   + + ++ ED
Sbjct:   27 ILLAFIAYVIVD-SASGDGRVTSTVEDFLDWVEDNPAEGVFAFIGVYFVATVLFIPGTILTLGAGFVFSSAFGLGVGVLLASIAVFVGASSGALASFLLGRYLLRDWVMTLTSKYQLFGAIDTALTNNGFKIMSLLRLSPIIPFNALNYIAGVTSVSFRDNALALLFILPGTVMYVFLGSSAGSL------SDSESSGDDQTTTIITVVFGIVFGLLGIAATSYYAKKELNAVIAQQDGERVDAED 265          
BLAST of mRNA_C-tenellus_contig10055.1.1 vs. uniprot
Match: A0A0G4EY60_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EY60_VITBC)

HSP 1 Score: 189 bits (479), Expect = 6.720e-51
Identity = 115/255 (45.10%), Postives = 165/255 (64.71%), Query Frame = 3
Query:  417 KTGLLVVLVGLLVYVILDYTVPGLGFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNKTVQQIVIVVGVIATIIAIVLISVYAKQAL-----SEALKDVEEDGIEG 1166
            K  + +V++ ++VY+I+D T      VA+ L  F +WV+DNP  G +A+ AVY++ TV FIPGS+LTLGAG  F  A G   G+  G  AVL+GA +GA LAF  GR++ +   QGL + FK+++A++K  ETQGLKL +LLRLSPVVPFSAFN++MG T+  +RDYA+G  G IPGT  YV+IG  A     G  +   +  G     Q + + VG++AT IA+ +++ +A++AL      EA +  + DG EG
Sbjct:   55 KLLVFLVIIAIIVYIIIDSTTGQR--VAEGLDIFKEWVQDNPATGILAYMAVYMVCTVAFIPGSILTLGAGFTFVCAFGNGPGMAAGIGAVLVGAFVGAQLAFFCGRFLFKSWVQGLTDKFKVMRAIDKVFETQGLKLNILLRLSPVVPFSAFNYIMGGTRTRYRDYAIGTLGIIPGTALYVYIG--AIPAFAGACSGKAE--GSGHWSQWVFLAVGLVATFIAVFIVTWFARKALREITEKEAAEASKADGKEG 303          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10055.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIK1_ECTSI8.480e-9871.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2Y1P9_9STRA2.530e-8761.85Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3YEX9_HETAK8.430e-7454.65Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4JVV3_9STRA6.440e-5844.36Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6H5JID7_9PHAE2.760e-5649.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2A6Q3_TRICV9.380e-5443.95Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2MII1_9STRA1.460e-5239.72Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2PDT1_9STRA1.650e-5246.96Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2JYW7_9STRA1.920e-5243.50Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A0G4EY60_VITBC6.720e-5145.10Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10055contigC-tenellus_contig10055:709..4138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FIK1
PFAMsSNARE_assoc
Model size1921
Max annot lvl2759|Eukaryota
KEGG rclassRC00046
KEGG koko:K00486
KEGG ReactionR01960
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
Hectar predicted targeting categorysignal anchor
Exons7
Evalue2.43e-30
EggNOG OGsCOG0398@1|root,KOG3140@2759|Eukaryota
EC1.14.13.9
Descriptioncanonical Wnt signaling pathway involved in osteoblast differentiation
Cds size342
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10055.1.1prot_C-tenellus_contig10055.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10055 1026..1479 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789113.0027993-UTR-C-tenellus_contig10055:708..10251680789113.0027993-UTR-C-tenellus_contig10055:708..1025Choristocarpus tenellus KU2346UTRC-tenellus_contig10055 709..1025 +
1680789113.0361505-UTR-C-tenellus_contig10055:1479..15121680789113.0361505-UTR-C-tenellus_contig10055:1479..1512Choristocarpus tenellus KU2346UTRC-tenellus_contig10055 1480..1512 +
1680789113.046775-UTR-C-tenellus_contig10055:1782..19761680789113.046775-UTR-C-tenellus_contig10055:1782..1976Choristocarpus tenellus KU2346UTRC-tenellus_contig10055 1783..1976 +
1680789113.0591216-UTR-C-tenellus_contig10055:2200..22901680789113.0591216-UTR-C-tenellus_contig10055:2200..2290Choristocarpus tenellus KU2346UTRC-tenellus_contig10055 2201..2290 +
1680789113.0721529-UTR-C-tenellus_contig10055:2909..29951680789113.0721529-UTR-C-tenellus_contig10055:2909..2995Choristocarpus tenellus KU2346UTRC-tenellus_contig10055 2910..2995 +
1680789113.0806932-UTR-C-tenellus_contig10055:3249..35221680789113.0806932-UTR-C-tenellus_contig10055:3249..3522Choristocarpus tenellus KU2346UTRC-tenellus_contig10055 3250..3522 +
1680789113.0910385-UTR-C-tenellus_contig10055:3552..41381680789113.0910385-UTR-C-tenellus_contig10055:3552..4138Choristocarpus tenellus KU2346UTRC-tenellus_contig10055 3553..4138 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789113.0167925-CDS-C-tenellus_contig10055:1025..11841680789113.0167925-CDS-C-tenellus_contig10055:1025..1184Choristocarpus tenellus KU2346CDSC-tenellus_contig10055 1026..1184 +
1680789113.025657-CDS-C-tenellus_contig10055:1296..14791680789113.025657-CDS-C-tenellus_contig10055:1296..1479Choristocarpus tenellus KU2346CDSC-tenellus_contig10055 1297..1479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10055.1.1

>prot_C-tenellus_contig10055.1.1 ID=prot_C-tenellus_contig10055.1.1|Name=mRNA_C-tenellus_contig10055.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=114bp
MNLKAQDLPKSNQAIAVDEGVESHAFTKNDNLLKTGLLVVLVGLLVYVIL
DYTVPGLGFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLT
LGAGLAFGRALGI*
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mRNA from alignment at C-tenellus_contig10055:709..4138+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10055.1.1 ID=mRNA_C-tenellus_contig10055.1.1|Name=mRNA_C-tenellus_contig10055.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3430bp|location=Sequence derived from alignment at C-tenellus_contig10055:709..4138+ (Choristocarpus tenellus KU2346)
GCTCGTTGGAAAAAAAGTATACTCATCTACAAAATGTGAGAGACCATACC ATAAGAATAAAGTACTCACCTACTAATTGTATGTCATTGGTCCCTTCTCC CTTTGTTTTATGAGATTGTGTGTTTCTGTGTTGTCAACCTGGTTTGAAAA TGATTGTCACATGGTTACTGTGTATCTCATCAGTCAGCCCCAAGTCTTCA ACAAAGCACAAGCAGAAAAATACATATTCTCCTCTCTCCCCTCTGTTTAA CGTTGAGGCCCCGTAATATCACGAACAAACATTTCAGCTCACTCCCCATC ACCTAGTTGACATCAACATGAACCTCAAGGCCCAAGATCTACCCAAGTCA AACCAAGCGATTGCTGTAGATGAAGGCGTGGAGTCGCATGCGTTTACCAA GAATGATAATCTCTTAAAGACTGGGCTGCTTGTGGTCTTGGTTGGGCTCC TCGTTTATGTCATACTTGACTACACGGTAGGTCAAGAAGTTGCTCGCATG TCTCGCCTGTTGTAGTTGTGAATATCCAATCACCCACAATACCATACCTT AGTACCTTCGTGGTTTCTCTCATCCTACTCTGTAACAGGTTCCTGGCCTT GGGTTCGTGGCTGACACACTCAAGGAATTCCTGGACTGGGTAGAGGACAA TCCAGGGGAAGGGTTCGTCGCCTTTGCAGCAGTCTACGTCCTAACAACCG TGTGTTTCATACCAGGATCATTGCTGACCCTGGGTGCAGGCCTTGCGTTT GGCCGGGCCTTAGGTATCTGACTTGGTGTTCTGCTAGGGTCAGCAGCGGT GCTGGTGAGACCTGGACACACTCGCTGGGATGTTGCCGTTGTGAATGTCT GAAGAATTGCTTGTGCCCTCTCTGTAGTTGTAATTATTTTCGATCTCGCC TTCAATATTCACGACCATTACTTTAATTGGCGTGGCTACCGAACCTGTTT CGGGAAAGGGTTGCGTTGTGGTGATAACGAACACGAGAAACCCTCCGGAT TGGCTGGCACGCAGGACAAGCATTCACGGAACACGTTGTATTCATGTGCC CGTTTCTTGTCGCTACTTTTGCAGCTAGGTGCCACCATAGGTGCTCTCCT AGCTTTCCTGCTTGGGCGGTACGTCTTGCAGCAACAGGCTCAAGGCCTAT TCAACACATTCAAAATCCTTCAAGCTGTGAACAAGGCGATTGAAACCCAG GGCCTGAAGCTAGTGCTCCTCCTCAGGCTCTCCCCAGTTGTCCCCTTTTC TGCCTTCAACCATGTCATGTGAGCAGACCCTCATCTACTATTGTAGAGGG AAGAGTAGATCTGTTTTAACCGGTGTAAATTATGCCCCTTTTCTAATCAT TACCGTACTTCGCCTGCTGTGATGCCTGACTTGACAGATGCGTAGTATAC GATAAGTTGGCAATTTATTTATGAGAACCTCACACCAGTGATTCCCCCTC TCACACATACTCTCTCCTCCATGCTGGCTGTCTCCAAACCAGGGGACTGA CCAAGGTATCTTTCCGAGACTATGCTCTGGGTTGCTTTGGGTTCATCCCA GGGACTGTTGCCTACGTTTTCATCGGCACAAGGTTAGACCCTCTATTGCT CACTAGTGCCAACCTTGAGGTAACATGCCCACGTCTTCTATTTCAGTACT TAGATTTGTCTCCCCTCCACATGGAGACATTTCAGTGTGGCACGCTGGGT TGAGATATCATGTGCACTCAGCATGGTCTCCACTAAGCATTGCTTGTTGG TGAGGCTGTCAATTTCTGGAGATTGCATGCCACAGTTCTAGTTGCATGTT AGTGAGACCTATGAAGTATCTGGTGTTTGAAAGAGGTGGAGCGACTTGTT GGCACAACATCATAACAGGATAATAGTGGACATCATAATCAGGAACGTCT TTGAACATGCTAGGTTCCTACTGTACATCAAGCACCAATTTCAACATGAC TGGTAAGATCTAGTTTCCCACGTGGTTTGCTTGTTTGTAGACTAAACCCC AACATGAGATAGGGTTTGTCTTTAGGGGCAGGAGAAGCCGAGGAACAGAT TATGTAGGCTGTATCCTTACACTGTTGTGGAGTTAGGTAGCGCTCATCAC ACACCTTGCAGGATGGCGAGTTCCTTGACCATTGGCTTATTTCTGTTTCC TCTTGCAAACTGTGTCTACTCTCACCCCCTGATCTGTTCTACTCTGGACA GTGCCTCACATCTCTTGGGAGGTGAAGACAATGATGACATGGACAAAGAT GGTGGGAATAAAACTGTGCAACAGATTGTCATTGTTGGTAAGTGCAGTGT GGTTGTGCACAAGGGAAGTGGTGTTATGGAAAAATAGTGTGAAGTGCAAA TCTGTACTTTGGTCAGTGACCTTAAAGAAACGCGCTGTCGATGTTGTAGT TACTACAGCCTGTATGATCAGAATTTTTCCATTTCTATCTATTCCATCCC AAACCACAACCTAACCTGTCCCTCTCTAAAAGTTTTCCTTTTCTCCTTGT CTGTCCCCTGACCTCCCCACCTCCCTTGCCTGACTTTGCAGTGGGGGTGA TTGCCACCATCATTGCAATAGTGCTTATCAGTGTTTATGCCAAGCAAGCA TTGAGCGAGGCTCTGAAGGATGTGGAAGAAGATGGCATTGAGGGAGAGGA CAAGGTACTCAGACTAGTTACTACGGAGGTCAAAAGCACATCACCTATGG AAGTTGATGATCCAGTTTGTAGCCAAGTTGTACGAAATGGAATAGAAATT TTGTTGTTTGTGTTAGAAAATTCTAGGTACTATGTGATTTTTCAGGTTTT GTGAATATAATTGAAGACCCTACGATCTAGGTCTTAGTAACTTTGAGTTT GTGTTGCATTGAGAATAGAATAGCAATGGTCTAGACATGTTACCTCCCTC CCCATTGCTATATTCTTTCTTGAGGTGGATGTAAGCAAATCTTCCTCATG GAAGTGAGTTTCTCCTCTGTGTGTACTCCTTCAGCTATTGTTAGTTCAGT TGTTGGTACTTCTAGTGTAGGAGTGCTGAAGAAAATGAGAGATTATCCCA CTTCAGAACTCTGTGGCAAAGATGTGGCACATACATTCAGGCAATTGGAT CAAACTTGCTTCCTTGCACTTAGGCCAATGCTATTGACTACATTGGATCA GATGTGTTTGGAATATGTTTAATAAATTTTTCTGTAGTTTTAAAAGCCAT GTGTGTGTGGGTTTGATATTTTTGCCAAGAATATTCCAGGTTGACGAATC CTCTCAGTATGATGGGCAATCTTTTCTTTTCTTCAGTGTGACGAGTTTCT TGAACCCCTCATACTATCAAAGATACTCAGCCTGTTGTAGTAGACTTTTT ACGGAGGCGTTCCTCTGATGGTATCAGGTACCACTATAGTGCATCTTCTC AGTGCATACACTATAGTGGATAAACCTCCA
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Coding sequence (CDS) from alignment at C-tenellus_contig10055:709..4138+

>mRNA_C-tenellus_contig10055.1.1 ID=mRNA_C-tenellus_contig10055.1.1|Name=mRNA_C-tenellus_contig10055.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=342bp|location=Sequence derived from alignment at C-tenellus_contig10055:709..4138+ (Choristocarpus tenellus KU2346)
ATGAACCTCAAGGCCCAAGATCTACCCAAGTCAAACCAAGCGATTGCTGT
AGATGAAGGCGTGGAGTCGCATGCGTTTACCAAGAATGATAATCTCTTAA
AGACTGGGCTGCTTGTGGTCTTGGTTGGGCTCCTCGTTTATGTCATACTT
GACTACACGGTTCCTGGCCTTGGGTTCGTGGCTGACACACTCAAGGAATT
CCTGGACTGGGTAGAGGACAATCCAGGGGAAGGGTTCGTCGCCTTTGCAG
CAGTCTACGTCCTAACAACCGTGTGTTTCATACCAGGATCATTGCTGACC
CTGGGTGCAGGCCTTGCGTTTGGCCGGGCCTTAGGTATCTGA
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