mRNA_C-tenellus_contig10053.2.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10053.2.2
Unique NamemRNA_C-tenellus_contig10053.2.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10053.2.2 vs. uniprot
Match: A0A7S2X950_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X950_9EUKA)

HSP 1 Score: 84.3 bits (207), Expect = 1.060e-14
Identity = 50/137 (36.50%), Postives = 78/137 (56.93%), Query Frame = 1 
Query:   13 MTILGGSAVAAFVSWMAYETGDH-FAWHPFLMSVGPLAVSAASIYAIRTRKAISKPKGRIWRVKIHSFLFNLATLMMAGGFYAIYTFKSSKGKEHYTSWHSWLGLAAL---VLMLASWVTAMLNTVDVQGRRLRWLW 411
            M  L G+A++  + ++A   G++ F WHP LM+ G +    A+I  ++ RK+++K   R W V++H FL + A + M  G  AIY  K+    +H+T+ HSWLGLA L   VL L    T  L  V + G+ ++ LW
Sbjct:   54 MGALVGAAISFVLGYLALSKGNNLFVWHPILMTAGSVFACTAAIDTVKRRKSMAKASKRSWMVQLHWFLMDAALIAMGLGVLAIYANKNKPLAKHFTTAHSWLGLAGLALFVLNLMGGATTTLGPVFLCGK-MKLLW 189
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BLAST of mRNA_C-tenellus_contig10053.2.2 vs. uniprot
Match: A0A7S3NL26_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NL26_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.930e-9
Identity = 38/113 (33.63%), Postives = 60/113 (53.10%), Query Frame = 1 
Query:   28 GSAVAAFVSWMAYETGDHFAWHPFLMSVGPLAVSAASIYAIRTRKAISKPKGRIWRVKIHSFLFNLATLMMAGGFYAIYTFKSSKGKEHYTSWHSWLGLAALVLMLASWVTAM 366
            G AV+ ++    + T + F++HP LM +        S +++    A+ K +G     K+H +L  LAT+     FY IY+ K    K+H+TSWHSW GL AL+  L  +V  +
Sbjct:   22 GVAVSGYLG-TKFGTWNWFSFHPALMML--------SFFSLTGAAALIKKRGGYTNTKLHGYLMALATVAAGFAFYVIYSNKIMLQKDHFTSWHSWWGLTALLAYLLLFVVGL 125
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BLAST of mRNA_C-tenellus_contig10053.2.2 vs. uniprot
Match: A0A7S1IW80_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IW80_9EUGL)

HSP 1 Score: 64.7 bits (156), Expect = 1.540e-8
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:   82 FAWHPFLMSVGPLAVSAASIYAIRTRKAISKPKGRIWRVKIHSFLFNLATLMMAGGFYAIYTFKSSKGKEHYTSWHSWLGLAALV 336
            F+WHP +M VG + +  A+I        + K  G +   K+H +L   A L  +  +Y IY+ K +  K H TSWHSW+G+AAL+
Sbjct:   41 FSWHPLMMMVGFVWLGGAAI--------LQKKLGGLENTKLHGYLMGAAILASSFAWYVIYSNKEANQKPHLTSWHSWIGMAALL 117
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BLAST of mRNA_C-tenellus_contig10053.2.2 vs. uniprot
Match: B8C411_THAPS (Cytochrome b561 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C411_THAPS)

HSP 1 Score: 63.5 bits (153), Expect = 3.850e-8
Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 1 
Query:   79 HFAWHPFLMSVGPLAVSAASIYAIRTRKAISKPKGRIWRVKIHSFLFNLATLMMAGGFYAIYTFKSSKGKEHYTSWHSWLGLAALV 336
            +F+WHP LM  G + +   +        A++K KG     K+H  +  +  ++  GG Y IY  K   GK+H+T+ HSW GLA L+
Sbjct:   38 YFSWHPLLMMCGMVGLMGTA--------ALTKKKGGYTNTKLHGIMAWIGMMLSGGGLYVIYQNKVEMGKDHFTTLHSWAGLAVLI 115
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BLAST of mRNA_C-tenellus_contig10053.2.2 vs. uniprot
Match: A0A210R359_MIZYE (Ascorbate ferrireductase (transmembrane) n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210R359_MIZYE)

HSP 1 Score: 62.4 bits (150), Expect = 1.510e-7
Identity = 35/129 (27.13%), Postives = 67/129 (51.94%), Query Frame = 1 
Query:   22 LGGSAVAAFVSWMAYETGDHFAWHPFLMSVGPLAVSAASIYAIRTRKAISKPKGRIWRVKIHSFLFNLATLMMAGGFYAIYTFKSSKGKEHYTSWHSWLGLAALVLMLASWVTAMLNTVDVQGRRLRWL 408
            +  + + AF+ + A      F+WHP LM+V  + +   +I     + ++   + R ++ ++H+++  +A +  + GF AIY  K    K H+TSWH ++G+  L  +L   +  +L  +   G  LRWL
Sbjct:    5 IAATLLTAFMVYTAVPGSSLFSWHPTLMTVAFVLLMFEAILVFSGQSSMILSQTRAYKAEVHAWVMGVAAICASCGFAAIYINKDMNHKNHFTSWHGFMGVLTLSYVLLQMIGGIL--LKYSGI-LRWL 130
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BLAST of mRNA_C-tenellus_contig10053.2.2 vs. uniprot
Match: A0A2R5GWD5_9STRA (Cytochrome b561 domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWD5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.830e-7
Identity = 37/108 (34.26%), Postives = 53/108 (49.07%), Query Frame = 1 
Query:   10 WMTILGGSAVAAFVSWMAYETGDHFAWHPFLMSVGPLAVSAASIYAIRTRKAISKPKGRIWRVKIHSFLFNLATLMMAGGFYAIYTFKSSKGKEHYTSWHSWLGLAAL 333
            W  +  G  V A+ S M   +   F+WHP +MSV          + I T   + K  G +   + H+ L    T ++  GFY IYT K    KEH+ SWH+W+GL +L
Sbjct:   20 WPCVAFGVGVGAY-SAMLPGSWTWFSWHPLIMSV--------VCFVIATLGTLLKKIGGLENTRTHAKLLTGGTALLWFGFYVIYTNKEMARKEHFLSWHAWIGLMSL 118
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BLAST of mRNA_C-tenellus_contig10053.2.2 vs. uniprot
Match: A0A812RVE1_9DINO (Aste57867_9460 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812RVE1_9DINO)

HSP 1 Score: 59.3 bits (142), Expect = 1.490e-6
Identity = 46/166 (27.71%), Postives = 69/166 (41.57%), Query Frame = 1 
Query:   76 DHFAWHPFLMSVGPLAVSAASIYAIRTRKAISKPKGRIWR-----VKIHSFLFNLATLMMAG-GFYAIYTFKSSKGKEHYTSWHSWLGLAALVLMLASWVTAMLNTVDVQGRRLRWLWFSRNXXXXXXXXXXXXXXXVITGFRSNWGVYKFGRTGTWALTAEVLIV 555
            + F +   L  V  L +  A +  + T  A    +GR        + +   + N+A + ++  GF+AI+  K+  GK H+TSWHSW GLA L L L +    +   V +      W W                   V+TG  S WG    G    W LTA + +V
Sbjct:   28 EFFGFRVQLFLVHVLCMGLAGVVLLPTTTACIAMRGRAPAALRKVLAVSHGVTNIALVAVSAVGFWAIFQNKNLHGKAHFTSWHSWAGLATLALWLMNLALGLQRLVALGS----WQWRHVLHRLVGTLAGTISLGAVVTGIWSQWGQAALGAHLQWILTALIGLV 189
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BLAST of mRNA_C-tenellus_contig10053.2.2 vs. uniprot
Match: UPI001896E4BD (cytochrome b561 domain-containing protein 2-like n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI001896E4BD)

HSP 1 Score: 57.0 bits (136), Expect = 1.030e-5
Identity = 39/115 (33.91%), Postives = 57/115 (49.57%), Query Frame = 1 
Query:   82 FAWHPFLMSVGPLAVSAASIYAIRTRKAISKPKGRIWRVKIHSFLFNLATLMMAGGFYAIYTFKSSKGKEHYTSWHSWLGLAALVLML---ASWVTAMLNTVDVQGRRLRWLWFS 417
            F WHP L         A   Y + T+ A+     R+ R ++H  L   +T     G +A +  K++ GK H+++WHSW GLAAL+L L   A  V AM       G+R  WL ++
Sbjct:   42 FPWHPTL---------AVLAYGLITQPAVLLV--RLGRTRLHWALQAASTACALLGCWAAFVHKAALGKPHFSTWHSWTGLAALLLTLLEAAVGVGAMTLRTSTVGKRYPWLKYA 145
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BLAST of mRNA_C-tenellus_contig10053.2.2 vs. uniprot
Match: UPI0014588462 (cytochrome b561 domain-containing protein 2-like isoform X1 n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI0014588462)

HSP 1 Score: 56.2 bits (134), Expect = 1.850e-5
Identity = 27/116 (23.28%), Postives = 58/116 (50.00%), Query Frame = 1 
Query:   22 LGGSAVAAFVSWMAYETGDHFAWHPFLMSVGPLAVSAASIYAIRTRKAISKPKGRIWRVKIHSFLFNLATLMMAGGFYAIYTFKSSKGKEHYTSWHSWLGLAALVLMLASWVTAML 369
            +  + + AF+ + A      F+WHP LM++  + +   +I       ++ + +    + +IH+++  +A    + GF +IY  K    K H+T+WH ++G+  L  +L   +  +L
Sbjct:    5 VAATLLTAFMVYTAVPGSSLFSWHPTLMTIAFVLLMFEAIIVFSRESSLFQSRTHATKAEIHAWVMGIAATCASCGFASIYINKDLNQKNHFTTWHGFIGVLTLSYVLLQLIGGIL 120
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10053.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A7S2X950_9EUKA1.060e-1436.50Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S3NL26_9STRA5.930e-933.63Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S1IW80_9EUGL1.540e-837.65Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
B8C411_THAPS3.850e-834.88Cytochrome b561 domain-containing protein n=1 Tax=... [more]
A0A210R359_MIZYE1.510e-727.13Ascorbate ferrireductase (transmembrane) n=1 Tax=M... [more]
A0A2R5GWD5_9STRA1.830e-734.26Cytochrome b561 domain-containing protein n=1 Tax=... [more]
A0A812RVE1_9DINO1.490e-627.71Aste57867_9460 protein n=1 Tax=Symbiodinium sp. KB... [more]
UPI001896E4BD1.030e-533.91cytochrome b561 domain-containing protein 2-like n... [more]
UPI00145884621.850e-523.28cytochrome b561 domain-containing protein 2-like i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10053contigC-tenellus_contig10053:3313..5612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZP2
PFAMsCytochrom_B561
Model size1238
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.47e-44
EggNOG OGs2D0D3@1|root,2SDR0@2759|Eukaryota
Ec32 ortholog descriptioncytochrome b-561 domain protein
Ec32 orthologEc-08_001190.1
DescriptionEukaryotic cytochrome b561
Cds size594
COG categoryU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789112.786964-UTR-C-tenellus_contig10053:3312..33241680789112.786964-UTR-C-tenellus_contig10053:3312..3324Choristocarpus tenellus KU2346UTRC-tenellus_contig10053 3313..3324 +
1680789112.8277695-UTR-C-tenellus_contig10053:4980..56121680789112.8277695-UTR-C-tenellus_contig10053:4980..5612Choristocarpus tenellus KU2346UTRC-tenellus_contig10053 4981..5612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789112.7983298-CDS-C-tenellus_contig10053:3324..35131680789112.7983298-CDS-C-tenellus_contig10053:3324..3513Choristocarpus tenellus KU2346CDSC-tenellus_contig10053 3325..3513 +
1680789112.8072803-CDS-C-tenellus_contig10053:3661..38881680789112.8072803-CDS-C-tenellus_contig10053:3661..3888Choristocarpus tenellus KU2346CDSC-tenellus_contig10053 3662..3888 +
1680789112.8180563-CDS-C-tenellus_contig10053:4802..49801680789112.8180563-CDS-C-tenellus_contig10053:4802..4980Choristocarpus tenellus KU2346CDSC-tenellus_contig10053 4803..4980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10053.2.2prot_C-tenellus_contig10053.2.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10053 3325..4980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10053.2.2

>prot_C-tenellus_contig10053.2.2 ID=prot_C-tenellus_contig10053.2.2|Name=mRNA_C-tenellus_contig10053.2.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=198bp
MTILGGSAVAAFVSWMAYETGDHFAWHPFLMSVGPLAVSAASIYAIRTRK
AISKPKGRIWRVKIHSFLFNLATLMMAGGFYAIYTFKSSKGKEHYTSWHS
WLGLAALVLMLASWVTAMLNTVDVQGRRLRWLWFSRNHRWLGIAAYVVSL
GAVITGFRSNWGVYKFGRTGTWALTAEVLIVGCGVLLLGIARKKNNQ*
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mRNA from alignment at C-tenellus_contig10053:3313..5612+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10053.2.2 ID=mRNA_C-tenellus_contig10053.2.2|Name=mRNA_C-tenellus_contig10053.2.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2300bp|location=Sequence derived from alignment at C-tenellus_contig10053:3313..5612+ (Choristocarpus tenellus KU2346)
GCGTTGTCTTGGATGACAATTTTGGGGGGTAGTGCCGTAGCGGCTTTCGT
GTCTTGGATGGCTTATGAAACCGGGGATCATTTCGCCTGGCACCCCTTCC
TCATGTCGGTGGGCCCTTTGGCGGTGAGCGCGGCATCCATATACGCCATT
CGGACTCGCAAGGCCATATCGAAGCCCAAGGGGAGAATATGGCGGGTGAA
GGTGAGACCTGATATGGGTCGGTCGAATGGCATCTCATGTCAGGCAGAAA
TCGAGGGTACTTCATCTCAATCCTTCCAATGTTCCAGCCCAACAAACAAA
TTCATCGTATGCTGTAGTAAACACTCGTGGTTGTTTTGCACGACTACAGA
TTCACAGCTTCCTGTTTAATTTAGCAACCCTGATGATGGCTGGAGGTTTT
TATGCTATCTACACCTTCAAGTCCTCCAAGGGCAAGGAACACTACACCTC
ATGGCACTCTTGGCTGGGACTTGCGGCCTTGGTCCTCATGTTGGCATCTT
GGGTAACAGCAATGTTGAATACGGTTGATGTTCAGGGAAGGAGATTAAGG
TGGCTGTGGTTTTCGAGAAACCATAGGTAGGTGCCTACTTTGTTATACCT
CTATTTATTGGATTGGGAGATAACCTTGTGCAATTTTCATCCTCAAGAAA
CGGTCGTGGTAATCTCCAACTCCTCTATAGCTGTATCCACGTTTTAAAAT
GGGTGTATGTAGTGACTTAGATTGATACTGCAGCAGTCGAGTCCTTGTTT
ATTTGCTTTATTGGATTGTGTTGATATGTTCTTCGACTAAGCGACCCTTT
TAAGTTCAACGAAAATACACAAACTTACACACGTATCACTTCCAGGTGCA
CACACCTCTAAAATGTCAATTCCACTTTCCTATCACCACGGTTGCTGAGC
ATGTCCAAGTCTTGGCTCACTGTTCTGAATAAGCATTTCGTGCTGGATTG
CTTGTGTTGAATGTACTTTTAGATATGCAGAACAAAAAGGATGCTGGGTG
AAAAGGCACTGTCAATAGTTGCATAACTCAAAATGAATACAGTTTCAGAT
TGGTTGGTCGCTTTTCACCAGGAGATTTTTTTTGTGTGCAAGTACCTGTT
GGTTCTTGGGTTATGTGGAACAGGTACTTTTTATATTCTGCATTGCTGAG
TTTATTATGCAGCAATTCGTACCACAGACCCCTGACTGTTGGCATGGTGC
TTGTGCAAGTATTTGTAATTGAAGCATATGCCCAGCTCTCAAAAATGTGT
GTGGCAGAGTGAACAGTTTTGTGAGATGTTTCAGTCACATAGGTTTGCAA
CAACTTACTTACCATGTTCAGGCTATGAACTACACAGCTTGGTATCAGAC
TACTTACAGGTTGTACTAAGAGTCTGTTTACAACTCGTCCATATATGTAT
ATATATATATATATTTAACTGGACTAGCTCTTCTGTGTGCATTAGTATAT
CTTTGTGTGAAATCCCACCCTTCTGCTCTCCCTTCCAAAGGTGGCTTGGC
ATAGCAGCCTATGTTGTCAGTCTTGGGGCTGTTATCACCGGCTTTCGCAG
CAACTGGGGAGTGTACAAATTTGGAAGGACTGGGACTTGGGCACTCACAG
CCGAAGTGCTCATTGTGGGCTGTGGGGTCTTGCTACTGGGAATAGCAAGG
AAAAAAAATAATCAATAGGTAGGTGTTTTCGCCTTGAAAAGTGTAAGAAG
ATAACGGCATGGAAGGCGAGATCTGGTGGTTATTCAAGTGGCATGGAGAG
AGCCTGGACATTCAACTCAACTTCCCATAGCCCTTGCTTATTATTGTTTC
AGACAAGACAAGGGATTCATATAGGTGGGGGTGTAGGGCTCATCGTTTTT
TTTGTGGGCACGTATATGGGTAGGACGACAGCCCACGTGTTAATGTTAAA
GGAGATCCAAGCAATTCGAGGATGTTAGTCTTGAAGGAGATCCAAGCCAC
TCTTGACCTACTGATGAACAGCACTTCCATCCAAACGTACTCTGGATGAT
TTCGGATTGCCTGCTTGCAGGTTGCTATACACAACTTACAATATTATTTT
TGTTTTTTTATTGTGAAGCGAAGACTGTTTATACTCTTTCGAAGGACTTC
AACTTGCTTTTTTTTGGAGGAGAGAGGGAGAGGCGTTTTCGTTTTCGTTT
TCTTTCCGTGCGCTTGAAGAATCCATGCTCCGAAGTAACTGGCTGTCTGT
TGCGGGGTAGTCGCTGCAACCTAAATGGAACAGTGGTGAACTGCTCGATC
TCCAAAAGAATCTACGGGTGGAACCATCCTGGTGAGAATGTGTATATGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10053:3313..5612+

>mRNA_C-tenellus_contig10053.2.2 ID=mRNA_C-tenellus_contig10053.2.2|Name=mRNA_C-tenellus_contig10053.2.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=594bp|location=Sequence derived from alignment at C-tenellus_contig10053:3313..5612+ (Choristocarpus tenellus KU2346)
ATGACAATTTTGGGGGGTAGTGCCGTAGCGGCTTTCGTGTCTTGGATGGC
TTATGAAACCGGGGATCATTTCGCCTGGCACCCCTTCCTCATGTCGGTGG
GCCCTTTGGCGGTGAGCGCGGCATCCATATACGCCATTCGGACTCGCAAG
GCCATATCGAAGCCCAAGGGGAGAATATGGCGGGTGAAGATTCACAGCTT
CCTGTTTAATTTAGCAACCCTGATGATGGCTGGAGGTTTTTATGCTATCT
ACACCTTCAAGTCCTCCAAGGGCAAGGAACACTACACCTCATGGCACTCT
TGGCTGGGACTTGCGGCCTTGGTCCTCATGTTGGCATCTTGGGTAACAGC
AATGTTGAATACGGTTGATGTTCAGGGAAGGAGATTAAGGTGGCTGTGGT
TTTCGAGAAACCATAGGTGGCTTGGCATAGCAGCCTATGTTGTCAGTCTT
GGGGCTGTTATCACCGGCTTTCGCAGCAACTGGGGAGTGTACAAATTTGG
AAGGACTGGGACTTGGGCACTCACAGCCGAAGTGCTCATTGTGGGCTGTG
GGGTCTTGCTACTGGGAATAGCAAGGAAAAAAAATAATCAATAG
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