mRNA_C-tenellus_contig10052.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10052.1.1
Unique NamemRNA_C-tenellus_contig10052.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10052.1.1 vs. uniprot
Match: A0A835ZLI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLI9_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.330e-17
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:  172 ETKFVRVIHNEKSHFIALYTGLNPEELSRLLRAAYSL-PHHVVGLMDEDSGPGHGMVVPISLACRTPEMLGEHTYSLLLSEKEVDWDR---SMGSFAGEHVKKEGSI 480
            +TK V V H   +H +ALY+G++P ELSRLL+AAY L   HVVGL   +S     +VVP+SLAC TP+++ + T+ LLL EKE+DWD    S  + AGE  +++  +
Sbjct:    2 DTKLVYVEHGGLAHHVALYSGISPTELSRLLKAAYQLRAQHVVGLQHMESR----VVVPLSLACHTPQVISQGTFGLLLCEKEIDWDARAVSARAGAGEQARQDSLV 104
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BLAST of mRNA_C-tenellus_contig10052.1.1 vs. uniprot
Match: A0A7S2MSW5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MSW5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.180e-7
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 1 
Query:  169 AETKFVRVIHNEKSHFIALYTGLNPEELSRLLRAAYSLPHH----VVGLMDEDSGPGHGMVVPISLACRTPEMLGEHTYSLLLSEKEV 420
            A  K VRV ++ +SHF+AL++G+N EELS L    + L       + GL D       G   P+SL C  PE L E +Y+L+L  ++V
Sbjct:    4 ASAKCVRVTYDGQSHFVALFSGVNVEELSSLFAVTFRLGKRGGAMIAGLED-----AQGRSTPLSLVCLYPECLREESYTLVLHARDV 86
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10052.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZLI9_9STRA1.330e-1746.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2MSW5_9STRA1.180e-738.64Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10052contigC-tenellus_contig10052:2996..4455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size760
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_005070.1
Cds size594
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789112.7020712-CDS-C-tenellus_contig10052:2995..32821680789112.7020712-CDS-C-tenellus_contig10052:2995..3282Choristocarpus tenellus KU2346CDSC-tenellus_contig10052 2996..3282 -
1680789112.7179978-CDS-C-tenellus_contig10052:3508..36081680789112.7179978-CDS-C-tenellus_contig10052:3508..3608Choristocarpus tenellus KU2346CDSC-tenellus_contig10052 3509..3608 -
1680789112.7286685-CDS-C-tenellus_contig10052:3913..40281680789112.7286685-CDS-C-tenellus_contig10052:3913..4028Choristocarpus tenellus KU2346CDSC-tenellus_contig10052 3914..4028 -
1680789112.7369432-CDS-C-tenellus_contig10052:4198..42901680789112.7369432-CDS-C-tenellus_contig10052:4198..4290Choristocarpus tenellus KU2346CDSC-tenellus_contig10052 4199..4290 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789112.755127-UTR-C-tenellus_contig10052:4290..44551680789112.755127-UTR-C-tenellus_contig10052:4290..4455Choristocarpus tenellus KU2346UTRC-tenellus_contig10052 4291..4455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10052.1.1prot_C-tenellus_contig10052.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10052 2996..4290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10052.1.1

>prot_C-tenellus_contig10052.1.1 ID=prot_C-tenellus_contig10052.1.1|Name=mRNA_C-tenellus_contig10052.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=198bp
MAETKFVRVIHNEKSHFIALYTGLNPEELSRLLRAAYSLPHHVVGLMDED
SGPGHGMVVPISLACRTPEMLGEHTYSLLLSEKEVDWDRSMGSFAGEHVK
KEGSIGQLPQFGKSEDPGLGWKNNDMLDSRGCFPGDPANHTPGGWNNRLY
GGPPGAPDVDQSVHARTRWGPNGIVSKEQGDEMEGGEGEKAAEEEKVE
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mRNA from alignment at C-tenellus_contig10052:2996..4455-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10052.1.1 ID=mRNA_C-tenellus_contig10052.1.1|Name=mRNA_C-tenellus_contig10052.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1460bp|location=Sequence derived from alignment at C-tenellus_contig10052:2996..4455- (Choristocarpus tenellus KU2346)
TACAGATTGTAGATTGGGAAAGACCCCAACCCATCTCTTCAATCAAGAAC
ATCCAAGTTAAGCAGCCTGTGGGATGCATATCACAGGACCCTCAGGGGCC
ACGCAATAGTGGTTAGGTACTCACAACCTGATAAGCCTCAGTGTATCAAG
AATATCCGCAACAATATGGCGGAGACAAAATTCGTTAGGGTTATCCACAA
TGAGAAGTCTCACTTCATTGCCCTCTACACTGGGCTAAACCCAGAGGAGC
TATCGCGGTGAGCTAGCTTTCCTCATTTTATTGAGCAGATCAGGCAATAA
TATTTCCCATGTCCAATCATTGCTCAAGAGCAAAACACTTTCGTCCAAAG
TGCTTTCCTTCAGCTTCAGCAACACGAGAAGTTGAACCCCCAAATCCACC
TCAACCATGGTCAACATCTTGACGAAGGTTGCTGCGAGCTGCCTACAGTC
TCCCGCACCATGTGGTGGGCCTTATGGATGAAGATTCTGGACCTGGACAT
GGTATGGTGGTGCCTATTTCTCTTGCATGCCGCACACCTGAGGTGACTGG
ATCATGATTTTGAATGGATATACTAATGTGTGTAAGGATGAAAGCAGACT
ACATAGCAGTCGAGATCAAATTATTGTACATCAACGAAAAATTAGCGGTG
GAAATGCCTGCTTGGGTGCTGTTTTCATTTTCGTATTATTTCGACCACTG
TTGGATCCACAATGCGTTCCAACTGTGATTTTGATCTTCAAAACCTCTTT
CGCTACGTTGGGTTCTCGAGTATCAAATCAATATTCCATATTACGACTAA
TCCTCAATTTCTTTCCTGCGGACCGATTGGCACACCTTGGTACTTAGATG
CTTGGAGAGCACACGTACTCGCTGCTCCTCAGTGAGAAGGAAGTGGACTG
GGACAGGTCGATGGGTAGCTTCGCGGGCGAGCACGTGAAGAAAGAAGGTA
TGGTTGTGCGTAGAATCGTCCATGAAATAATTCTATCCCCACCGCTCTCA
TCCTCTGACTCCGCTTGCCTCAATAATTCGTATGCACTAATATATTTGAG
TTGCATTGTTCCTCGGCGTACATTTATTTGCTCATCAAAATGGAGTGGCG
ATCTAAATGAAGGAGGAACCTTACAAATTCCTACTTTGCACACGCTATTT
TACACCGACTTGCGAGCGAGCAGGCAGCATAGGACAATTACCCCAATTTG
GTAAGAGTGAGGATCCAGGTTTGGGGTGGAAAAACAACGACATGTTGGAC
AGCCGAGGATGCTTCCCTGGAGATCCTGCAAATCACACCCCTGGAGGATG
GAACAACAGACTTTATGGCGGACCTCCTGGTGCTCCTGATGTTGACCAGA
GTGTACATGCTAGGACCAGGTGGGGACCCAATGGAATAGTGAGCAAGGAA
CAGGGAGATGAGATGGAAGGGGGGGAGGGTGAAAAAGCTGCAGAGGAAGA
GAAAGTAGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10052:2996..4455-

>mRNA_C-tenellus_contig10052.1.1 ID=mRNA_C-tenellus_contig10052.1.1|Name=mRNA_C-tenellus_contig10052.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=594bp|location=Sequence derived from alignment at C-tenellus_contig10052:2996..4455- (Choristocarpus tenellus KU2346)
ATGGCGGAGACAAAATTCGTTAGGGTTATCCACAATGAGAAGTCTCACTT
CATTGCCCTCTACACTGGGCTAAACCCAGAGGAGCTATCGCGGTTGCTGC
GAGCTGCCTACAGTCTCCCGCACCATGTGGTGGGCCTTATGGATGAAGAT
TCTGGACCTGGACATGGTATGGTGGTGCCTATTTCTCTTGCATGCCGCAC
ACCTGAGATGCTTGGAGAGCACACGTACTCGCTGCTCCTCAGTGAGAAGG
AAGTGGACTGGGACAGGTCGATGGGTAGCTTCGCGGGCGAGCACGTGAAG
AAAGAAGGCAGCATAGGACAATTACCCCAATTTGGTAAGAGTGAGGATCC
AGGTTTGGGGTGGAAAAACAACGACATGTTGGACAGCCGAGGATGCTTCC
CTGGAGATCCTGCAAATCACACCCCTGGAGGATGGAACAACAGACTTTAT
GGCGGACCTCCTGGTGCTCCTGATGTTGACCAGAGTGTACATGCTAGGAC
CAGGTGGGGACCCAATGGAATAGTGAGCAAGGAACAGGGAGATGAGATGG
AAGGGGGGGAGGGTGAAAAAGCTGCAGAGGAAGAGAAAGTAGAG
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