mRNA_C-tenellus_contig10048.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10048.1.1
Unique NamemRNA_C-tenellus_contig10048.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10048.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10048contigC-tenellus_contig10048:549..1116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size568
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789112.3469384-UTR-C-tenellus_contig10048:548..6861680789112.3469384-UTR-C-tenellus_contig10048:548..686Choristocarpus tenellus KU2346UTRC-tenellus_contig10048 549..686 -
1680789112.368673-UTR-C-tenellus_contig10048:998..11161680789112.368673-UTR-C-tenellus_contig10048:998..1116Choristocarpus tenellus KU2346UTRC-tenellus_contig10048 999..1116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789112.359335-CDS-C-tenellus_contig10048:686..9981680789112.359335-CDS-C-tenellus_contig10048:686..998Choristocarpus tenellus KU2346CDSC-tenellus_contig10048 687..998 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10048.1.1prot_C-tenellus_contig10048.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10048 687..998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10048.1.1

>prot_C-tenellus_contig10048.1.1 ID=prot_C-tenellus_contig10048.1.1|Name=mRNA_C-tenellus_contig10048.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=104bp
MGTSYVEHHLPPQMGIYLSSTQPNFCSMKVLTPSYLTSSCTKCMLNSNLT
FGGPTRYGPQCRFGFKRGNNSEINSRGTLCVWGNAVGLNYVVCTISLWHI
TSL*
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mRNA from alignment at C-tenellus_contig10048:549..1116-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10048.1.1 ID=mRNA_C-tenellus_contig10048.1.1|Name=mRNA_C-tenellus_contig10048.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=568bp|location=Sequence derived from alignment at C-tenellus_contig10048:549..1116- (Choristocarpus tenellus KU2346)
CGGTAATCGTATGTTTTTACCCTACATGTGTAGCATATGTGCCTGTACAC
TCTGGATAACATGTAGGTAGTACCTAATATAACATAGATCTTCACATACA
CTCGTGTCTCCTTCAACCATGGGTACATCATACGTTGAACATCATTTACC
CCCTCAAATGGGCATATACTTGTCAAGCACCCAACCTAACTTCTGCTCAA
TGAAAGTTCTAACGCCAAGTTATCTGACATCATCTTGTACAAAATGCATG
TTGAACTCTAACCTGACCTTTGGTGGCCCGACAAGATATGGACCACAATG
CCGGTTTGGTTTTAAGAGAGGAAACAACTCAGAGATTAATTCTCGTGGTA
CGCTTTGCGTTTGGGGCAATGCAGTAGGGTTGAATTATGTAGTGTGCACA
ATCTCTCTATGGCATATCACCTCCCTCTGAAATGACAGTAGCATGGGTTT
TTAACCTCTGTCCCTACCCCAACCCTGCTCCCTCATCCATTTCCGCCACA
TCCATCATTTTATTGGCCATCATTAAATATTTTGTAATACTTCCACAAGA
CATTCATAGATGCATGTC
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Coding sequence (CDS) from alignment at C-tenellus_contig10048:549..1116-

>mRNA_C-tenellus_contig10048.1.1 ID=mRNA_C-tenellus_contig10048.1.1|Name=mRNA_C-tenellus_contig10048.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=312bp|location=Sequence derived from alignment at C-tenellus_contig10048:549..1116- (Choristocarpus tenellus KU2346)
ATGGGTACATCATACGTTGAACATCATTTACCCCCTCAAATGGGCATATA
CTTGTCAAGCACCCAACCTAACTTCTGCTCAATGAAAGTTCTAACGCCAA
GTTATCTGACATCATCTTGTACAAAATGCATGTTGAACTCTAACCTGACC
TTTGGTGGCCCGACAAGATATGGACCACAATGCCGGTTTGGTTTTAAGAG
AGGAAACAACTCAGAGATTAATTCTCGTGGTACGCTTTGCGTTTGGGGCA
ATGCAGTAGGGTTGAATTATGTAGTGTGCACAATCTCTCTATGGCATATC
ACCTCCCTCTGA
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