mRNA_C-tenellus_contig10047.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10047.1.1
Unique NamemRNA_C-tenellus_contig10047.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10047.1.1 vs. uniprot
Match: D7FV47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV47_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 9.570e-18
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 YKRTSFIILSIGSVVALSAVMMGSHSLYNFLVPSEDAEEDGGFCSAGE 144
            YKRTSFI+LSIG+VVALSAVMMG HSLYNF+ P+ D E  GGFCS GE
Sbjct:   58 YKRTSFIVLSIGAVVALSAVMMGGHSLYNFMFPNPDEEGGGGFCSVGE 105
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BLAST of mRNA_C-tenellus_contig10047.1.1 vs. uniprot
Match: A0A6H5JFJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ9_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.200e-15
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 YKRTSFIILSIGSVVALSAVMMGSHSLYNFLVPSEDAEEDGGFCSAGE 144
            YKRTSFI+LSIG+VVALSAVMMG HSLYNF+ P+ D E  GGFCS GE
Sbjct:  486 YKRTSFIVLSIGAVVALSAVMMGGHSLYNFMFPNPDEEGAGGFCSVGE 533
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BLAST of mRNA_C-tenellus_contig10047.1.1 vs. uniprot
Match: D8LFQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ1_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 4.420e-9
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 YKRTSFIILSIGSVVALSAVMMGSHSLYNFLVPSEDAEEDGGFCSAG 141
            +KR SFIILSI SVVALSA +MG + LY+ + P+   EE+ G CS G
Sbjct:   30 FKRPSFIILSIASVVALSAFLMGINGLYDIIHPTAGGEEENGICSVG 76
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BLAST of mRNA_C-tenellus_contig10047.1.1 vs. uniprot
Match: A0A836CFF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFF2_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.280e-9
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 YKRTSFIILSIGSVVALSAVMMGSHSLYNFLVPSEDAEEDGGFCSAGE 144
            Y+R+S II+SIG+VVALSA++MG  SLY    P +D +E GGFC+AGE
Sbjct:  177 YQRSSLIIVSIGAVVALSALLMGGQSLYFLAFPRQD-DESGGFCAAGE 223
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BLAST of mRNA_C-tenellus_contig10047.1.1 vs. uniprot
Match: A0A835ZGS5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 9.950e-9
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 YKRTSFIILSIGSVVALSAVMMGSHSLYNFLVPSEDAEEDGGFCSAGE 144
            Y+R+S II+SIG+VVALSA++MG  SLY    P +D +E GGFC+AGE
Sbjct:  477 YQRSSLIIVSIGAVVALSALLMGGQSLYFLAFPRQD-DESGGFCAAGE 523
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BLAST of mRNA_C-tenellus_contig10047.1.1 vs. uniprot
Match: A0A6H5JD73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD73_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 4.760e-8
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 YKRTSFIILSIGSVVALSAVMMGSHSLYNFLVPSEDAEEDGGFCSAG 141
            +KR SFIILSI SVVALSA +MG + LY+ L P+   +E+ G CSAG
Sbjct:  458 FKRPSFIILSIASVVALSAFLMGINGLYDILHPTAGGDEEDGICSAG 504
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10047.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FV47_ECTSI9.570e-1877.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFJ9_9PHAE1.200e-1577.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFQ1_ECTSI4.420e-957.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CFF2_9STRA5.280e-960.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZGS5_9STRA9.950e-960.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JD73_9PHAE4.760e-859.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10047contigC-tenellus_contig10047:355..501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size147
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_001320.1
Cds size147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789112.3128183-CDS-C-tenellus_contig10047:354..5011680789112.3128183-CDS-C-tenellus_contig10047:354..501Choristocarpus tenellus KU2346CDSC-tenellus_contig10047 355..501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10047.1.1prot_C-tenellus_contig10047.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10047 355..501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10047.1.1

>prot_C-tenellus_contig10047.1.1 ID=prot_C-tenellus_contig10047.1.1|Name=mRNA_C-tenellus_contig10047.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=49bp
YKRTSFIILSIGSVVALSAVMMGSHSLYNFLVPSEDAEEDGGFCSAGE*
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mRNA from alignment at C-tenellus_contig10047:355..501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10047.1.1 ID=mRNA_C-tenellus_contig10047.1.1|Name=mRNA_C-tenellus_contig10047.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=147bp|location=Sequence derived from alignment at C-tenellus_contig10047:355..501+ (Choristocarpus tenellus KU2346)
TACAAGCGCACGAGCTTCATCATCCTGTCCATCGGGTCCGTAGTGGCCTT
GAGCGCAGTGATGATGGGCAGCCATAGTTTGTACAACTTTTTAGTCCCTA
GTGAAGATGCCGAGGAAGATGGTGGGTTCTGCAGTGCGGGGGAGTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig10047:355..501+

>mRNA_C-tenellus_contig10047.1.1 ID=mRNA_C-tenellus_contig10047.1.1|Name=mRNA_C-tenellus_contig10047.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=147bp|location=Sequence derived from alignment at C-tenellus_contig10047:355..501+ (Choristocarpus tenellus KU2346)
TACAAGCGCACGAGCTTCATCATCCTGTCCATCGGGTCCGTAGTGGCCTT
GAGCGCAGTGATGATGGGCAGCCATAGTTTGTACAACTTTTTAGTCCCTA
GTGAAGATGCCGAGGAAGATGGTGGGTTCTGCAGTGCGGGGGAGTAA
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