mRNA_C-tenellus_contig10045.2.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Match: UPI00080A3936 (uncharacterized protein LOC108327389 n=1 Tax=Phaseolus angularis TaxID=3914 RepID=UPI00080A3936) HSP 1 Score: 90.1 bits (222), Expect = 7.210e-18 Identity = 44/82 (53.66%), Postives = 59/82 (71.95%), Query Frame = 1 Query: 1 QWQEAMKKEMAGLWQKGTFSDKALPPGRKAIKTRFIFKIKHSADGSAERYKARLVAHGLTQNAGVDLLETFSPVVG*RHTTM 246 +W +AM KE+ L GT+ LPPG+K+I ++++KIKH ADG+ ERYKARLVA G TQ G+D L+TFSPV +HTT+ Sbjct: 706 EWVDAMNKEIKALEDNGTWFLTKLPPGKKSIGCKWVYKIKHKADGTVERYKARLVAKGYTQQEGIDFLDTFSPVA--KHTTV 785
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Match: A0A392MRN7_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MRN7_9FABA) HSP 1 Score: 85.5 bits (210), Expect = 3.480e-17 Identity = 38/74 (51.35%), Postives = 57/74 (77.03%), Query Frame = 1 Query: 1 QWQEAMKKEMAGLWQKGTFSDKALPPGRKAIKTRFIFKIKHSADGSAERYKARLVAHGLTQNAGVDLLETFSPV 222 +W++AM +E+ L T++ + LPPG+KA+ R+I+K+K+ ADG+ +RYKARLVA G TQ AG+D ++TFSPV Sbjct: 134 EWRKAMAEEIVALESNNTWTVQPLPPGKKAVGCRWIYKVKYRADGTLDRYKARLVAQGFTQQAGIDFVDTFSPV 207
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Match: M1C4J6_SOLTU (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1C4J6_SOLTU) HSP 1 Score: 87.0 bits (214), Expect = 7.860e-17 Identity = 41/108 (37.96%), Postives = 69/108 (63.89%), Query Frame = 2 Query: 200 YWKPSARLLDNDTLRCIISVAAYRGWSIDALDLTQAYLNADLQEDIWLELPDG-------HTVKEEKAIYGLKQSAMEWYHELRNTILAEGWTSSQHDECLYFKKSED 502 Y + + ++ T+RC+++VAA + W I LD+ A+L+ DLQE+++++ P G H K K++YGLKQ++ +WY L + +G++SS +D L+FKKSED Sbjct: 74 YTETFSPVVKMTTIRCLLTVAAKKCWPIFQLDVNNAFLHGDLQEEVYMKFPAGLASPSPNHVCKLRKSLYGLKQASRQWYARLAGALSFKGYSSSLNDYSLFFKKSED 181
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Match: A0A5E4GFK0_PRUDU (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=7 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GFK0_PRUDU) HSP 1 Score: 79.7 bits (195), Expect = 1.070e-16 Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1 Query: 4 WQEAMKKEMAGLWQKGTFSDKALPPGRKAIKTRFIFKIKHSADGSAERYKARLVAHGLTQNAGVDLLETFSPV 222 W +A+K+EM L + T++ + +P G+K I+ R++F IKH+ADGS ERYKARLVA G T+ G+D ETF+PV Sbjct: 3 WVQAIKEEMKALEKNQTWTLETIPRGKKTIRCRWVFTIKHNADGSIERYKARLVAKGYTRTYGIDYEETFAPV 75
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Match: UPI000904BBE9 (uncharacterized protein LOC109231500 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000904BBE9) HSP 1 Score: 80.9 bits (198), Expect = 1.160e-16 Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 1 Query: 4 WQEAMKKEMAGLWQKGTFSDKALPPGRKAIKTRFIFKIKHSADGSAERYKARLVAHGLTQNAGVDLLETFSPVV 225 WQ AM KE L+ T+ LP G+KAI ++++KIKH ADG+ ER+KARLV G Q AG+D ETFSPVV Sbjct: 22 WQAAMTKEFEALYANHTWDLVTLPAGKKAIGCKWVYKIKHKADGTVERFKARLVVKGYIQQAGIDYNETFSPVV 95
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Match: A0A151U8R3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151U8R3_CAJCA) HSP 1 Score: 82.4 bits (202), Expect = 1.160e-16 Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1 Query: 4 WQEAMKKEMAGLWQKGTFSDKALPPGRKAIKTRFIFKIKHSADGSAERYKARLVAHGLTQNAGVDLLETFSPVV 225 W++AM E+ L + T++ LPPG+K + R+++KIKH DGS ER+KARLVA G TQ GVD ETFSPVV Sbjct: 39 WKQAMASELQALDRNHTWTLVHLPPGKKLVGCRWVYKIKHKTDGSIERFKARLVAKGFTQTEGVDYFETFSPVV 112
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Match: UPI00073A1E7B (uncharacterized protein LOC107061351 n=1 Tax=Solanum tuberosum TaxID=4113 RepID=UPI00073A1E7B) HSP 1 Score: 86.3 bits (212), Expect = 1.590e-16 Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 1 Query: 4 WQEAMKKEMAGLWQKGTFSDKALPPGRKAIKTRFIFKIKHSADGSAERYKARLVAHGLTQNAGVDLLETFSPVV 225 WQ AM +E A L T+S LP G+KAI R+++KIKH ADGS ERYKARLV G TQ+ G+D ETFSPVV Sbjct: 934 WQTAMTQEFAALHDNNTWSLIPLPIGKKAIGCRWVYKIKHKADGSVERYKARLVVKGYTQHLGIDYTETFSPVV 1007
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Match: A0A392P0U1_9FABA (Retrovirus-related pol polyprotein from transposon (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392P0U1_9FABA) HSP 1 Score: 84.3 bits (207), Expect = 1.740e-16 Identity = 40/74 (54.05%), Postives = 56/74 (75.68%), Query Frame = 1 Query: 1 QWQEAMKKEMAGLWQKGTFSDKALPPGRKAIKTRFIFKIKHSADGSAERYKARLVAHGLTQNAGVDLLETFSPV 222 +W++AM +E+A L T+S + L G+KA+ R+I+K+K+ ADGS +RYKARLVA G TQ AG+D L+TFSPV Sbjct: 176 EWRKAMAEELAALEANNTWSVQPLQQGKKAVGCRWIYKVKYRADGSLDRYKARLVAQGFTQQAGIDFLDTFSPV 249
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Match: A0A2Z6NVR4_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NVR4_TRISU) HSP 1 Score: 85.9 bits (211), Expect = 2.140e-16 Identity = 41/127 (32.28%), Postives = 75/127 (59.06%), Query Frame = 2 Query: 161 SWHMGLPKMQE------WIYWKPSARLLDNDTLRCIISVAAYRGWSIDALDLTQAYLNADLQEDIWLELPDGHTVKEE-------KAIYGLKQSAMEWYHELRNTILAEGWTSSQHDECLYFKKSED 502 +W + LP + + W+Y K A + T+RC++SVA +GW + +D++ A+L+ DL+E++++++PDG+ V +E K++YGLKQ++ WY +L +++ G+ S D L ED Sbjct: 546 TWDVMLPPVGKKIVGCRWVY-KTFAPVAKMTTIRCLLSVAVAKGWELHQMDISNAFLHGDLEEEVYMQVPDGYQVPKEGMVCRLRKSLYGLKQASRNWYSKLSRSLINYGFQESNSDHSLVTYTKED 671
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Match: A0A5C3E5T1_9BASI (Uncharacterized protein n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3E5T1_9BASI) HSP 1 Score: 85.9 bits (211), Expect = 2.220e-16 Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 1 Query: 4 WQEAMKKEMAGLWQKGTFSDKALPPGRKAIKTRFIFKIKHSADGSAERYKARLVAHGLTQNAGVDLLETFSPVV 225 W+ A+KKE+A L + GT++ + LPPGR+A+ ++++FKIK ADG+ ++YKARLVA G TQ GVD ETF+PV+ Sbjct: 845 WETAIKKELASLSENGTWTLEDLPPGRRAVGSKWVFKIKLKADGTVDKYKARLVAQGFTQQHGVDYDETFAPVL 918 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10045.2.1 >prot_C-tenellus_contig10045.2.1 ID=prot_C-tenellus_contig10045.2.1|Name=mRNA_C-tenellus_contig10045.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=112bp MGLPKMQEWIYWKPSARLLDNDTLRCIISVAAYRGWSIDALDLTQAYLNAback to top mRNA from alignment at C-tenellus_contig10045:1451..1955+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10045.2.1 ID=mRNA_C-tenellus_contig10045.2.1|Name=mRNA_C-tenellus_contig10045.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=505bp|location=Sequence derived from alignment at C-tenellus_contig10045:1451..1955+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10045:1451..1955+ >mRNA_C-tenellus_contig10045.2.1 ID=mRNA_C-tenellus_contig10045.2.1|Name=mRNA_C-tenellus_contig10045.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=336bp|location=Sequence derived from alignment at C-tenellus_contig10045:1451..1955+ (Choristocarpus tenellus KU2346)back to top |