mRNA_C-tenellus_contig10045.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10045.2.1
Unique NamemRNA_C-tenellus_contig10045.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Match: UPI00080A3936 (uncharacterized protein LOC108327389 n=1 Tax=Phaseolus angularis TaxID=3914 RepID=UPI00080A3936)

HSP 1 Score: 90.1 bits (222), Expect = 7.210e-18
Identity = 44/82 (53.66%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 QWQEAMKKEMAGLWQKGTFSDKALPPGRKAIKTRFIFKIKHSADGSAERYKARLVAHGLTQNAGVDLLETFSPVVG*RHTTM 246
            +W +AM KE+  L   GT+    LPPG+K+I  ++++KIKH ADG+ ERYKARLVA G TQ  G+D L+TFSPV   +HTT+
Sbjct:  706 EWVDAMNKEIKALEDNGTWFLTKLPPGKKSIGCKWVYKIKHKADGTVERYKARLVAKGYTQQEGIDFLDTFSPVA--KHTTV 785          
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Match: A0A392MRN7_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MRN7_9FABA)

HSP 1 Score: 85.5 bits (210), Expect = 3.480e-17
Identity = 38/74 (51.35%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 QWQEAMKKEMAGLWQKGTFSDKALPPGRKAIKTRFIFKIKHSADGSAERYKARLVAHGLTQNAGVDLLETFSPV 222
            +W++AM +E+  L    T++ + LPPG+KA+  R+I+K+K+ ADG+ +RYKARLVA G TQ AG+D ++TFSPV
Sbjct:  134 EWRKAMAEEIVALESNNTWTVQPLPPGKKAVGCRWIYKVKYRADGTLDRYKARLVAQGFTQQAGIDFVDTFSPV 207          
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Match: M1C4J6_SOLTU (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1C4J6_SOLTU)

HSP 1 Score: 87.0 bits (214), Expect = 7.860e-17
Identity = 41/108 (37.96%), Postives = 69/108 (63.89%), Query Frame = 2
Query:  200 YWKPSARLLDNDTLRCIISVAAYRGWSIDALDLTQAYLNADLQEDIWLELPDG-------HTVKEEKAIYGLKQSAMEWYHELRNTILAEGWTSSQHDECLYFKKSED 502
            Y +  + ++   T+RC+++VAA + W I  LD+  A+L+ DLQE+++++ P G       H  K  K++YGLKQ++ +WY  L   +  +G++SS +D  L+FKKSED
Sbjct:   74 YTETFSPVVKMTTIRCLLTVAAKKCWPIFQLDVNNAFLHGDLQEEVYMKFPAGLASPSPNHVCKLRKSLYGLKQASRQWYARLAGALSFKGYSSSLNDYSLFFKKSED 181          
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Match: A0A5E4GFK0_PRUDU (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=7 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GFK0_PRUDU)

HSP 1 Score: 79.7 bits (195), Expect = 1.070e-16
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    4 WQEAMKKEMAGLWQKGTFSDKALPPGRKAIKTRFIFKIKHSADGSAERYKARLVAHGLTQNAGVDLLETFSPV 222
            W +A+K+EM  L +  T++ + +P G+K I+ R++F IKH+ADGS ERYKARLVA G T+  G+D  ETF+PV
Sbjct:    3 WVQAIKEEMKALEKNQTWTLETIPRGKKTIRCRWVFTIKHNADGSIERYKARLVAKGYTRTYGIDYEETFAPV 75          
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Match: UPI000904BBE9 (uncharacterized protein LOC109231500 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000904BBE9)

HSP 1 Score: 80.9 bits (198), Expect = 1.160e-16
Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    4 WQEAMKKEMAGLWQKGTFSDKALPPGRKAIKTRFIFKIKHSADGSAERYKARLVAHGLTQNAGVDLLETFSPVV 225
            WQ AM KE   L+   T+    LP G+KAI  ++++KIKH ADG+ ER+KARLV  G  Q AG+D  ETFSPVV
Sbjct:   22 WQAAMTKEFEALYANHTWDLVTLPAGKKAIGCKWVYKIKHKADGTVERFKARLVVKGYIQQAGIDYNETFSPVV 95          
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Match: A0A151U8R3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151U8R3_CAJCA)

HSP 1 Score: 82.4 bits (202), Expect = 1.160e-16
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    4 WQEAMKKEMAGLWQKGTFSDKALPPGRKAIKTRFIFKIKHSADGSAERYKARLVAHGLTQNAGVDLLETFSPVV 225
            W++AM  E+  L +  T++   LPPG+K +  R+++KIKH  DGS ER+KARLVA G TQ  GVD  ETFSPVV
Sbjct:   39 WKQAMASELQALDRNHTWTLVHLPPGKKLVGCRWVYKIKHKTDGSIERFKARLVAKGFTQTEGVDYFETFSPVV 112          
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Match: UPI00073A1E7B (uncharacterized protein LOC107061351 n=1 Tax=Solanum tuberosum TaxID=4113 RepID=UPI00073A1E7B)

HSP 1 Score: 86.3 bits (212), Expect = 1.590e-16
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    4 WQEAMKKEMAGLWQKGTFSDKALPPGRKAIKTRFIFKIKHSADGSAERYKARLVAHGLTQNAGVDLLETFSPVV 225
            WQ AM +E A L    T+S   LP G+KAI  R+++KIKH ADGS ERYKARLV  G TQ+ G+D  ETFSPVV
Sbjct:  934 WQTAMTQEFAALHDNNTWSLIPLPIGKKAIGCRWVYKIKHKADGSVERYKARLVVKGYTQHLGIDYTETFSPVV 1007          
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Match: A0A392P0U1_9FABA (Retrovirus-related pol polyprotein from transposon (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392P0U1_9FABA)

HSP 1 Score: 84.3 bits (207), Expect = 1.740e-16
Identity = 40/74 (54.05%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    1 QWQEAMKKEMAGLWQKGTFSDKALPPGRKAIKTRFIFKIKHSADGSAERYKARLVAHGLTQNAGVDLLETFSPV 222
            +W++AM +E+A L    T+S + L  G+KA+  R+I+K+K+ ADGS +RYKARLVA G TQ AG+D L+TFSPV
Sbjct:  176 EWRKAMAEELAALEANNTWSVQPLQQGKKAVGCRWIYKVKYRADGSLDRYKARLVAQGFTQQAGIDFLDTFSPV 249          
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Match: A0A2Z6NVR4_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NVR4_TRISU)

HSP 1 Score: 85.9 bits (211), Expect = 2.140e-16
Identity = 41/127 (32.28%), Postives = 75/127 (59.06%), Query Frame = 2
Query:  161 SWHMGLPKMQE------WIYWKPSARLLDNDTLRCIISVAAYRGWSIDALDLTQAYLNADLQEDIWLELPDGHTVKEE-------KAIYGLKQSAMEWYHELRNTILAEGWTSSQHDECLYFKKSED 502
            +W + LP + +      W+Y K  A +    T+RC++SVA  +GW +  +D++ A+L+ DL+E++++++PDG+ V +E       K++YGLKQ++  WY +L  +++  G+  S  D  L     ED
Sbjct:  546 TWDVMLPPVGKKIVGCRWVY-KTFAPVAKMTTIRCLLSVAVAKGWELHQMDISNAFLHGDLEEEVYMQVPDGYQVPKEGMVCRLRKSLYGLKQASRNWYSKLSRSLINYGFQESNSDHSLVTYTKED 671          
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Match: A0A5C3E5T1_9BASI (Uncharacterized protein n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3E5T1_9BASI)

HSP 1 Score: 85.9 bits (211), Expect = 2.220e-16
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    4 WQEAMKKEMAGLWQKGTFSDKALPPGRKAIKTRFIFKIKHSADGSAERYKARLVAHGLTQNAGVDLLETFSPVV 225
            W+ A+KKE+A L + GT++ + LPPGR+A+ ++++FKIK  ADG+ ++YKARLVA G TQ  GVD  ETF+PV+
Sbjct:  845 WETAIKKELASLSENGTWTLEDLPPGRRAVGSKWVFKIKLKADGTVDKYKARLVAQGFTQQHGVDYDETFAPVL 918          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10045.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00080A39367.210e-1853.66uncharacterized protein LOC108327389 n=1 Tax=Phase... [more]
A0A392MRN7_9FABA3.480e-1751.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
M1C4J6_SOLTU7.860e-1737.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E4GFK0_PRUDU1.070e-1652.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI000904BBE91.160e-1654.05uncharacterized protein LOC109231500 n=1 Tax=Nicot... [more]
A0A151U8R3_CAJCA1.160e-1654.05Retrovirus-related Pol polyprotein from transposon... [more]
UPI00073A1E7B1.590e-1659.46uncharacterized protein LOC107061351 n=1 Tax=Solan... [more]
A0A392P0U1_9FABA1.740e-1654.05Retrovirus-related pol polyprotein from transposon... [more]
A0A2Z6NVR4_TRISU2.140e-1632.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A5C3E5T1_9BASI2.220e-1654.05Uncharacterized protein n=2 Tax=Ustilago trichopho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10045contigC-tenellus_contig10045:1451..1955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4113.PGSC0003DMT400059660
PFAMsRVT_2
Model size505
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.93e-18
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,383NS@33090|Viridiplantae,3GVP7@35493|Streptophyta,44NWX@71274|asterids
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size336
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789112.2691243-UTR-C-tenellus_contig10045:1450..16191680789112.2691243-UTR-C-tenellus_contig10045:1450..1619Choristocarpus tenellus KU2346UTRC-tenellus_contig10045 1451..1619 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789112.2804296-CDS-C-tenellus_contig10045:1619..19551680789112.2804296-CDS-C-tenellus_contig10045:1619..1955Choristocarpus tenellus KU2346CDSC-tenellus_contig10045 1620..1955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10045.2.1prot_C-tenellus_contig10045.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10045 1620..1955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10045.2.1

>prot_C-tenellus_contig10045.2.1 ID=prot_C-tenellus_contig10045.2.1|Name=mRNA_C-tenellus_contig10045.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=112bp
MGLPKMQEWIYWKPSARLLDNDTLRCIISVAAYRGWSIDALDLTQAYLNA
DLQEDIWLELPDGHTVKEEKAIYGLKQSAMEWYHELRNTILAEGWTSSQH
DECLYFKKSEDG
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mRNA from alignment at C-tenellus_contig10045:1451..1955+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10045.2.1 ID=mRNA_C-tenellus_contig10045.2.1|Name=mRNA_C-tenellus_contig10045.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=505bp|location=Sequence derived from alignment at C-tenellus_contig10045:1451..1955+ (Choristocarpus tenellus KU2346)
CAATGGCAAGAGGCCATGAAAAAAGAAATGGCAGGACTTTGGCAGAAGGG GACGTTTAGTGACAAAGCCCTACCCCCAGGAAGGAAGGCAATCAAAACAC GATTTATTTTCAAGATCAAGCACTCAGCAGACGGGTCAGCGGAAAGATAT AAGGCGAGACTCGTGGCACATGGGCTTACCCAAAATGCAGGAGTGGATTT ATTGGAAACCTTCAGCCCGGTTGTTGGATAACGACACACTACGATGCATC ATATCAGTCGCAGCGTACAGAGGTTGGAGCATAGACGCTCTGGACCTTAC ACAGGCCTACCTCAACGCCGATCTGCAGGAGGACATCTGGCTGGAGCTTC CTGATGGCCACACAGTCAAGGAAGAGAAGGCGATCTATGGGCTGAAGCAG TCAGCAATGGAATGGTACCATGAACTACGCAACACTATTCTTGCAGAAGG ATGGACAAGCAGCCAACACGACGAGTGTCTCTACTTCAAGAAGAGTGAAG ACGGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10045:1451..1955+

>mRNA_C-tenellus_contig10045.2.1 ID=mRNA_C-tenellus_contig10045.2.1|Name=mRNA_C-tenellus_contig10045.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=336bp|location=Sequence derived from alignment at C-tenellus_contig10045:1451..1955+ (Choristocarpus tenellus KU2346)
ATGGGCTTACCCAAAATGCAGGAGTGGATTTATTGGAAACCTTCAGCCCG
GTTGTTGGATAACGACACACTACGATGCATCATATCAGTCGCAGCGTACA
GAGGTTGGAGCATAGACGCTCTGGACCTTACACAGGCCTACCTCAACGCC
GATCTGCAGGAGGACATCTGGCTGGAGCTTCCTGATGGCCACACAGTCAA
GGAAGAGAAGGCGATCTATGGGCTGAAGCAGTCAGCAATGGAATGGTACC
ATGAACTACGCAACACTATTCTTGCAGAAGGATGGACAAGCAGCCAACAC
GACGAGTGTCTCTACTTCAAGAAGAGTGAAGACGGA
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