mRNA_C-tenellus_contig10045.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10045.1.1
Unique NamemRNA_C-tenellus_contig10045.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10045.1.1 vs. uniprot
Match: A0A146HJ32_MYCCL (CCHC-type domain-containing protein (Fragment) n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HJ32_MYCCL)

HSP 1 Score: 58.5 bits (140), Expect = 6.430e-7
Identity = 32/89 (35.96%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:   34 EREE*ILDSAASCYITHMVKSMTNYKPCIGDQRVVTANQNSFCIAGHGDLTILFPSRDNKEVEILLQNVAHVPDLGFNLFSFQAIADKG 300
            E E  +LDS A+ ++T     + NY   I  + +  A+Q  F   G GDLT++ P+ + KEV++ + NV H P LG  L S   I+  G
Sbjct:  409 EYEPVVLDSGATQHMTPNRDLLKNYS-AIKPRAITAADQGVFHAVGSGDLTVVIPNGEGKEVKVTIHNVLHAPKLGATLLSIGKISQLG 496
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10045.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A146HJ32_MYCCL6.430e-735.96CCHC-type domain-containing protein (Fragment) n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10045contigC-tenellus_contig10045:671..1186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7425.NV18815-PA
Model size516
Max annot lvl7425.NV18815-PA|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000412
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,396RZ@33154|Opisthokonta,3CB3X@33208|Metazoa,3DSCH@33213|Bilateria,428FP@6656|Arthropoda,3SU2P@50557|Insecta,46MPY@7399|Hymenoptera
DescriptionIntegrase core domain
Cds size432
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789112.2237456-UTR-C-tenellus_contig10045:670..7541680789112.2237456-UTR-C-tenellus_contig10045:670..754Choristocarpus tenellus KU2346UTRC-tenellus_contig10045 671..754 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789112.2332494-CDS-C-tenellus_contig10045:754..11861680789112.2332494-CDS-C-tenellus_contig10045:754..1186Choristocarpus tenellus KU2346CDSC-tenellus_contig10045 755..1186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10045.1.1prot_C-tenellus_contig10045.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10045 755..1186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10045.1.1

>prot_C-tenellus_contig10045.1.1 ID=prot_C-tenellus_contig10045.1.1|Name=mRNA_C-tenellus_contig10045.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=144bp
MVKSMTNYKPCIGDQRVVTANQNSFCIAGHGDLTILFPSRDNKEVEILLQ
NVAHVPDLGFNLFSFQAIADKGAKGIFTASTFSLLDGVLTFTRDPGCHHT
LHVQRILLRLDRNADVTLKATIAPSIAPHAPHTNVDINLFHRS*
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mRNA from alignment at C-tenellus_contig10045:671..1186+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10045.1.1 ID=mRNA_C-tenellus_contig10045.1.1|Name=mRNA_C-tenellus_contig10045.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=516bp|location=Sequence derived from alignment at C-tenellus_contig10045:671..1186+ (Choristocarpus tenellus KU2346)
GACTGTTTGGTGTCAAGTGTTGAGGTTGGCCGTGAGAGAGAAGAATAGAT
TTTGGACAGTGCGGCTTCATGTTACATAACGCATATGGTAAAATCCATGA
CAAATTACAAGCCTTGCATTGGAGACCAAAGGGTAGTCACTGCTAACCAA
AATTCCTTTTGCATCGCTGGTCATGGTGATCTAACCATCTTGTTTCCGTC
ACGTGACAACAAGGAGGTAGAAATACTCCTTCAAAATGTCGCCCATGTCC
CTGATCTTGGATTCAACCTTTTCTCTTTCCAAGCAATAGCTGATAAGGGT
GCAAAAGGCATTTTCACAGCCAGCACATTCTCGCTATTAGATGGAGTACT
TACCTTCACAAGAGATCCTGGTTGCCACCATACCCTCCATGTTCAACGCA
TATTGCTGCGACTAGATCGAAATGCTGACGTTACTTTAAAGGCCACTATA
GCCCCCTCGATTGCACCCCACGCTCCCCACACCAACGTCGACATTAACCT
TTTCCACCGCTCTTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig10045:671..1186+

>mRNA_C-tenellus_contig10045.1.1 ID=mRNA_C-tenellus_contig10045.1.1|Name=mRNA_C-tenellus_contig10045.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=432bp|location=Sequence derived from alignment at C-tenellus_contig10045:671..1186+ (Choristocarpus tenellus KU2346)
ATGGTAAAATCCATGACAAATTACAAGCCTTGCATTGGAGACCAAAGGGT
AGTCACTGCTAACCAAAATTCCTTTTGCATCGCTGGTCATGGTGATCTAA
CCATCTTGTTTCCGTCACGTGACAACAAGGAGGTAGAAATACTCCTTCAA
AATGTCGCCCATGTCCCTGATCTTGGATTCAACCTTTTCTCTTTCCAAGC
AATAGCTGATAAGGGTGCAAAAGGCATTTTCACAGCCAGCACATTCTCGC
TATTAGATGGAGTACTTACCTTCACAAGAGATCCTGGTTGCCACCATACC
CTCCATGTTCAACGCATATTGCTGCGACTAGATCGAAATGCTGACGTTAC
TTTAAAGGCCACTATAGCCCCCTCGATTGCACCCCACGCTCCCCACACCA
ACGTCGACATTAACCTTTTCCACCGCTCTTAA
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