mRNA_C-tenellus_contig10031.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10031.2.1
Unique NamemRNA_C-tenellus_contig10031.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10031.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10031contigC-tenellus_contig10031:5035..5348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size316
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789111.441666-UTR-C-tenellus_contig10031:5034..50391680789111.441666-UTR-C-tenellus_contig10031:5034..5039Choristocarpus tenellus KU2346UTRC-tenellus_contig10031 5035..5039 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789111.4516249-CDS-C-tenellus_contig10031:5039..53481680789111.4516249-CDS-C-tenellus_contig10031:5039..5348Choristocarpus tenellus KU2346CDSC-tenellus_contig10031 5040..5348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10031.2.1prot_C-tenellus_contig10031.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10031 5040..5348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10031.2.1

>prot_C-tenellus_contig10031.2.1 ID=prot_C-tenellus_contig10031.2.1|Name=mRNA_C-tenellus_contig10031.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=103bp
MGHDRTSLCWHIWLPQEAKLVTSAHVMFEPDKDIMDFVGERETMTLTDDE
EISDTEDDSDRDFDIAVDPIPLSSPSGQRRSARIAEQPRVDYRGLHSGDT
EEL
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mRNA from alignment at C-tenellus_contig10031:5035..5348+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10031.2.1 ID=mRNA_C-tenellus_contig10031.2.1|Name=mRNA_C-tenellus_contig10031.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=314bp|location=Sequence derived from alignment at C-tenellus_contig10031:5035..5348+ (Choristocarpus tenellus KU2346)
AAATAATGGGACACGATCGCACATCATTATGCTGGCACATCTGGCTTCCT
CAAGAGGCCAAGTTGGTAACCTCAGCCCACGTGATGTTCGAGCCAGACAA
AGACATCATGGACTTCGTGGGGGAGAGAGAGACCATGACTTTGACGGATG
ATGAAGAAATTTCTGATACTGAAGACGACTCTGATCGGGATTTCGATATT
GCAGTCGATCCGATTCCCCTTAGTTCACCTAGTGGACAACGGAGGTCAGC
CAGGATAGCTGAACAACCCAGGGTCGATTACAGGGGCTTACACTCTGGAG
ATACAGAAGAACTT
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Coding sequence (CDS) from alignment at C-tenellus_contig10031:5035..5348+

>mRNA_C-tenellus_contig10031.2.1 ID=mRNA_C-tenellus_contig10031.2.1|Name=mRNA_C-tenellus_contig10031.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=309bp|location=Sequence derived from alignment at C-tenellus_contig10031:5035..5348+ (Choristocarpus tenellus KU2346)
ATGGGACACGATCGCACATCATTATGCTGGCACATCTGGCTTCCTCAAGA
GGCCAAGTTGGTAACCTCAGCCCACGTGATGTTCGAGCCAGACAAAGACA
TCATGGACTTCGTGGGGGAGAGAGAGACCATGACTTTGACGGATGATGAA
GAAATTTCTGATACTGAAGACGACTCTGATCGGGATTTCGATATTGCAGT
CGATCCGATTCCCCTTAGTTCACCTAGTGGACAACGGAGGTCAGCCAGGA
TAGCTGAACAACCCAGGGTCGATTACAGGGGCTTACACTCTGGAGATACA
GAAGAACTT
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